Wall clock time and date at job start Tue Mar 31 2020 12:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46981 * 2 1 4 4 H 1.08992 * 109.47108 * 55.00385 * 3 2 1 5 5 O 1.45208 * 109.47036 * 295.00158 * 3 2 1 6 6 C 1.34752 * 116.99611 * 150.00015 * 5 3 2 7 7 O 1.21508 * 120.00383 * 0.02562 * 6 5 3 8 8 C 1.47466 * 119.99587 * 180.02562 * 6 5 3 9 9 C 1.39837 * 120.06974 * 359.72548 * 8 6 5 10 10 C 1.37605 * 119.93016 * 179.71807 * 9 8 6 11 11 C 1.39274 * 120.06798 * 0.56021 * 10 9 8 12 12 N 1.39075 * 119.93027 * 179.69898 * 11 10 9 13 13 C 1.34774 * 119.99428 * 213.66588 * 12 11 10 14 14 O 1.21719 * 120.00672 * 5.27364 * 13 12 11 15 15 C 1.46199 * 119.99701 * 185.27872 * 13 12 11 16 16 H 1.08001 * 119.99947 * 359.97438 * 15 13 12 17 17 C 1.40121 * 120.00309 * 179.97438 * 15 13 12 18 18 N 1.30639 * 119.99698 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00309 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47096 * 90.00315 * 19 17 15 21 21 H 1.48503 * 109.47159 * 210.00397 * 19 17 15 22 22 H 1.48504 * 109.47269 * 330.00343 * 19 17 15 23 23 C 1.39265 * 120.13358 * 359.71624 * 11 10 9 24 24 C 1.37606 * 120.07108 * 0.02562 * 23 11 10 25 25 C 1.50705 * 109.46961 * 175.00386 * 3 2 1 26 26 N 1.34770 * 120.00124 * 299.99975 * 25 3 2 27 27 O 1.21285 * 119.99652 * 119.99925 * 25 3 2 28 28 H 1.09007 * 109.46533 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46550 * 299.99645 * 1 2 3 30 30 H 1.08989 * 109.47408 * 59.99943 * 1 2 3 31 31 H 1.09002 * 109.47074 * 240.00317 * 2 1 3 32 32 H 1.09002 * 109.47639 * 120.00171 * 2 1 3 33 33 H 1.07997 * 120.02865 * 359.97410 * 9 8 6 34 34 H 1.08002 * 119.95983 * 180.27060 * 10 9 8 35 35 H 0.96997 * 120.00022 * 33.65904 * 12 11 10 36 36 H 0.97001 * 120.00066 * 179.97438 * 18 17 15 37 37 H 1.08002 * 119.96895 * 179.97438 * 23 11 10 38 38 H 1.08002 * 120.03726 * 179.97438 * 24 23 11 39 39 H 0.97001 * 119.99589 * 359.97438 * 26 25 3 40 40 H 0.97000 * 120.00257 * 180.02562 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6558 2.0917 -1.2408 6 6 1.4458 3.4220 -1.1956 7 8 1.5806 4.0232 -0.1483 8 6 1.0526 4.1482 -2.4173 9 6 0.9027 3.4587 -3.6246 10 6 0.5299 4.1383 -4.7616 11 6 0.3134 5.5132 -4.7134 12 7 -0.0572 6.1982 -5.8656 13 6 0.3614 7.4643 -6.0608 14 8 1.1407 7.9753 -5.2778 15 6 -0.1205 8.2241 -7.2132 16 1 -0.8117 7.7706 -7.9082 17 6 0.3142 9.5406 -7.4159 18 7 1.1506 10.0890 -6.5755 19 14 -0.3010 10.5111 -8.8887 20 1 -1.5401 11.2408 -8.5180 21 1 0.7390 11.4837 -9.3101 22 1 -0.5911 9.5802 -10.0088 23 6 0.4675 6.2036 -3.5137 24 6 0.8349 5.5288 -2.3721 25 6 3.5419 1.4443 0.1237 26 7 4.1299 0.8911 1.2029 27 8 4.2216 1.9436 -0.7479 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5139 0.8900 33 1 1.0753 2.3934 -3.6636 34 1 0.4098 3.6055 -5.6934 35 1 -0.6168 5.7646 -6.5288 36 1 1.4519 11.0002 -6.7160 37 1 0.2992 7.2699 -3.4794 38 1 0.9546 6.0648 -1.4422 39 1 3.5862 0.4922 1.9002 40 1 5.0966 0.8926 1.2828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726992373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:30 Heat of formation + Delta-G solvation = -144.052502 kcal Electronic energy + Delta-G solvation = -25902.801376 eV Core-core repulsion = 21875.231492 eV Total energy + Delta-G solvation = -4027.569884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85717 -39.53239 -38.86948 -37.03058 -36.36752 -34.61549 -33.64078 -33.27783 -32.55801 -30.53588 -29.64520 -27.91421 -26.47966 -23.72243 -22.69202 -22.47195 -21.23334 -20.50795 -19.88124 -18.22653 -17.99308 -17.57805 -17.26245 -16.61313 -16.16787 -15.58864 -15.37221 -15.08353 -14.72619 -14.42506 -14.24037 -14.16666 -13.93843 -13.53095 -13.17219 -12.80363 -12.70796 -12.59573 -12.40712 -12.04232 -11.91217 -11.70880 -11.44795 -11.34679 -11.29156 -11.14025 -10.78846 -10.66074 -10.39742 -10.34558 -10.02882 -9.94238 -9.47576 -8.98140 -8.59104 -7.87484 -7.28418 -6.42570 -4.90805 1.16336 1.89845 2.27899 2.49336 2.85654 3.04088 3.10814 3.14244 3.23669 3.92474 4.15594 4.27381 4.40171 4.44230 4.49424 4.61524 4.67958 5.03274 5.09101 5.25401 5.29506 5.38189 5.49157 5.54097 5.65271 5.80291 5.89052 5.94851 6.10332 6.30423 6.43786 6.46277 6.62652 6.87044 6.91096 6.92807 7.18552 7.23566 7.60617 7.86853 7.89943 7.97652 8.04496 8.76771 9.06654 10.27058 10.47583 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.031070 B = 0.002376 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.987862 B =11781.111247 C =12154.079109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C 0.071 3.929 4 H 0.112 0.888 5 O -0.325 6.325 6 C 0.522 3.478 7 O -0.520 6.520 8 C -0.185 4.185 9 C -0.033 4.033 10 C -0.195 4.195 11 C 0.237 3.763 12 N -0.694 5.694 13 C 0.538 3.462 14 O -0.554 6.554 15 C -0.535 4.535 16 H 0.074 0.926 17 C 0.085 3.915 18 N -0.756 5.756 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.147 4.147 24 C -0.028 4.028 25 C 0.503 3.497 26 N -0.852 5.852 27 O -0.520 6.520 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.397 0.603 36 H 0.274 0.726 37 H 0.148 0.852 38 H 0.130 0.870 39 H 0.401 0.599 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 -20.323 12.360 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C 0.011 3.989 4 H 0.130 0.870 5 O -0.241 6.241 6 C 0.369 3.631 7 O -0.410 6.410 8 C -0.187 4.187 9 C -0.052 4.052 10 C -0.217 4.217 11 C 0.135 3.865 12 N -0.335 5.335 13 C 0.345 3.655 14 O -0.435 6.435 15 C -0.571 4.571 16 H 0.092 0.908 17 C -0.137 4.137 18 N -0.384 5.384 19 Si 0.739 3.261 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.168 4.168 24 C -0.047 4.047 25 C 0.286 3.714 26 N -0.418 5.418 27 O -0.393 6.393 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.231 0.769 36 H 0.085 0.915 37 H 0.165 0.835 38 H 0.148 0.852 39 H 0.229 0.771 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.150 -19.123 12.505 22.877 hybrid contribution -0.197 0.073 -0.497 0.540 sum -1.347 -19.050 12.008 22.559 Atomic orbital electron populations 1.21782 0.93923 1.02473 1.03043 1.21629 0.97903 0.91751 1.03895 1.22564 0.91609 0.95884 0.88813 0.87014 1.86687 1.78991 1.23265 1.35148 1.21335 0.72625 0.79927 0.89168 1.90779 1.49828 1.68038 1.32346 1.18714 1.15082 0.93729 0.91218 1.21021 0.93782 0.99461 0.90934 1.20852 1.08261 0.93598 0.98994 1.18291 0.89758 0.90826 0.87619 1.44308 1.52966 1.16813 1.19450 1.18472 0.81340 0.78215 0.87474 1.90663 1.36798 1.67866 1.48197 1.20865 1.28751 0.97859 1.09610 0.90805 1.25768 0.93439 0.97601 0.96873 1.69977 1.22704 1.13268 1.32410 0.86243 0.79051 0.79522 0.81283 1.19501 1.20233 1.18719 1.21283 1.03606 1.01866 0.90044 1.21040 0.93389 0.91550 0.98715 1.20927 0.90949 0.77572 0.81950 1.43769 1.11638 1.62832 1.23577 1.90827 1.65194 1.43575 1.39753 0.91770 0.92384 0.91416 0.89869 0.89588 0.85190 0.85556 0.76912 0.91539 0.83470 0.85171 0.77062 0.76412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.81 37.16 0.36 -0.63 16 2 C -0.11 -0.75 5.59 -26.73 -0.15 -0.90 16 3 C 0.07 0.76 2.37 -27.88 -0.07 0.69 16 4 H 0.11 1.14 7.16 -51.93 -0.37 0.77 16 5 O -0.32 -4.67 8.21 -47.31 -0.39 -5.06 16 6 C 0.52 8.96 7.82 34.49 0.27 9.23 16 7 O -0.52 -9.76 15.60 -19.27 -0.30 -10.06 16 8 C -0.18 -3.28 5.88 -104.94 -0.62 -3.90 16 9 C -0.03 -0.53 9.60 -39.21 -0.38 -0.90 16 10 C -0.20 -3.27 9.94 -39.43 -0.39 -3.67 16 11 C 0.24 4.80 6.27 -83.81 -0.53 4.28 16 12 N -0.69 -14.90 5.30 -11.19 -0.06 -14.96 16 13 C 0.54 14.45 7.46 -13.07 -0.10 14.35 16 14 O -0.55 -16.92 12.69 5.17 0.07 -16.86 16 15 C -0.54 -14.16 9.54 -35.68 -0.34 -14.50 16 16 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 17 C 0.08 2.24 5.50 -17.35 -0.10 2.15 16 18 N -0.76 -21.59 11.82 55.55 0.66 -20.93 16 19 Si 0.91 19.09 29.56 -169.99 -5.02 14.07 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 C -0.15 -3.12 8.62 -39.43 -0.34 -3.46 16 24 C -0.03 -0.53 9.58 -39.21 -0.38 -0.91 16 25 C 0.50 6.04 7.48 -10.99 -0.08 5.96 16 26 N -0.85 -5.66 8.73 31.22 0.27 -5.39 16 27 O -0.52 -9.09 17.31 -14.11 -0.24 -9.34 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.54 7.82 -51.94 -0.41 0.14 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.30 7.43 -51.93 -0.39 -0.09 16 33 H 0.13 1.74 7.60 -52.49 -0.40 1.35 16 34 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.40 7.10 8.79 -40.82 -0.36 6.75 16 36 H 0.27 7.08 8.29 -40.82 -0.34 6.75 16 37 H 0.15 3.51 6.41 -52.49 -0.34 3.17 16 38 H 0.13 2.37 7.64 -52.49 -0.40 1.97 16 39 H 0.40 1.18 8.19 -40.82 -0.33 0.84 16 40 H 0.40 2.35 8.93 -40.82 -0.36 1.98 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -37.31 354.60 -7.10 -44.41 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -4.59 Total: 10.99 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -2.82 Total: 7.79 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.87 Total: -41.28 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.87 Total: -41.31 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.31 -7.10 -44.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726992373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.642 kcal (2) G-P(sol) polarization free energy of solvation -37.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds