Wall clock time and date at job start Tue Mar 31 2020 12:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46981 * 2 1 4 4 H 1.08992 * 109.47108 * 55.00385 * 3 2 1 5 5 O 1.45208 * 109.47036 * 295.00158 * 3 2 1 6 6 C 1.34752 * 116.99611 * 150.00015 * 5 3 2 7 7 O 1.21508 * 120.00383 * 0.02562 * 6 5 3 8 8 C 1.47466 * 119.99587 * 180.02562 * 6 5 3 9 9 C 1.39837 * 120.06974 * 359.72548 * 8 6 5 10 10 C 1.37605 * 119.93016 * 179.71807 * 9 8 6 11 11 C 1.39274 * 120.06798 * 0.56021 * 10 9 8 12 12 N 1.39075 * 119.93027 * 179.69898 * 11 10 9 13 13 C 1.34774 * 119.99428 * 213.66588 * 12 11 10 14 14 O 1.21719 * 120.00672 * 5.27364 * 13 12 11 15 15 C 1.46199 * 119.99701 * 185.27872 * 13 12 11 16 16 H 1.08001 * 119.99947 * 359.97438 * 15 13 12 17 17 C 1.40121 * 120.00309 * 179.97438 * 15 13 12 18 18 N 1.30639 * 119.99698 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00309 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47096 * 90.00315 * 19 17 15 21 21 H 1.48503 * 109.47159 * 210.00397 * 19 17 15 22 22 H 1.48504 * 109.47269 * 330.00343 * 19 17 15 23 23 C 1.39265 * 120.13358 * 359.71624 * 11 10 9 24 24 C 1.37606 * 120.07108 * 0.02562 * 23 11 10 25 25 C 1.50705 * 109.46961 * 175.00386 * 3 2 1 26 26 N 1.34770 * 120.00124 * 299.99975 * 25 3 2 27 27 O 1.21285 * 119.99652 * 119.99925 * 25 3 2 28 28 H 1.09007 * 109.46533 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46550 * 299.99645 * 1 2 3 30 30 H 1.08989 * 109.47408 * 59.99943 * 1 2 3 31 31 H 1.09002 * 109.47074 * 240.00317 * 2 1 3 32 32 H 1.09002 * 109.47639 * 120.00171 * 2 1 3 33 33 H 1.07997 * 120.02865 * 359.97410 * 9 8 6 34 34 H 1.08002 * 119.95983 * 180.27060 * 10 9 8 35 35 H 0.96997 * 120.00022 * 33.65904 * 12 11 10 36 36 H 0.97001 * 120.00066 * 179.97438 * 18 17 15 37 37 H 1.08002 * 119.96895 * 179.97438 * 23 11 10 38 38 H 1.08002 * 120.03726 * 179.97438 * 24 23 11 39 39 H 0.97001 * 119.99589 * 359.97438 * 26 25 3 40 40 H 0.97000 * 120.00257 * 180.02562 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6558 2.0917 -1.2408 6 6 1.4458 3.4220 -1.1956 7 8 1.5806 4.0232 -0.1483 8 6 1.0526 4.1482 -2.4173 9 6 0.9027 3.4587 -3.6246 10 6 0.5299 4.1383 -4.7616 11 6 0.3134 5.5132 -4.7134 12 7 -0.0572 6.1982 -5.8656 13 6 0.3614 7.4643 -6.0608 14 8 1.1407 7.9753 -5.2778 15 6 -0.1205 8.2241 -7.2132 16 1 -0.8117 7.7706 -7.9082 17 6 0.3142 9.5406 -7.4159 18 7 1.1506 10.0890 -6.5755 19 14 -0.3010 10.5111 -8.8887 20 1 -1.5401 11.2408 -8.5180 21 1 0.7390 11.4837 -9.3101 22 1 -0.5911 9.5802 -10.0088 23 6 0.4675 6.2036 -3.5137 24 6 0.8349 5.5288 -2.3721 25 6 3.5419 1.4443 0.1237 26 7 4.1299 0.8911 1.2029 27 8 4.2216 1.9436 -0.7479 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5139 0.8900 33 1 1.0753 2.3934 -3.6636 34 1 0.4098 3.6055 -5.6934 35 1 -0.6168 5.7646 -6.5288 36 1 1.4519 11.0002 -6.7160 37 1 0.2992 7.2699 -3.4794 38 1 0.9546 6.0648 -1.4422 39 1 3.5862 0.4922 1.9002 40 1 5.0966 0.8926 1.2828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726992373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:30 Heat of formation + Delta-G solvation = -172.177472 kcal Electronic energy + Delta-G solvation = -25904.020966 eV Core-core repulsion = 21875.231492 eV Total energy + Delta-G solvation = -4028.789474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.02179 -40.96104 -40.19390 -38.70668 -37.62697 -35.52722 -35.37355 -34.58592 -34.00468 -32.01686 -31.20375 -28.87817 -28.27555 -25.20351 -23.98562 -23.33025 -22.61863 -21.75447 -21.33213 -19.63572 -19.21395 -18.94425 -18.36960 -17.96121 -17.57770 -17.45931 -16.55194 -16.19687 -15.98978 -15.75715 -15.58031 -15.26248 -15.01541 -14.87817 -14.72525 -14.49524 -14.25997 -13.65955 -13.59663 -13.35031 -13.14455 -13.05538 -12.80227 -12.74800 -12.66350 -12.32094 -12.18921 -12.04169 -11.89500 -11.66749 -11.19560 -10.94300 -10.90391 -10.80574 -10.14398 -9.86721 -8.96849 -8.39981 -6.98196 -0.30906 0.42886 1.31936 1.37002 1.40577 1.42121 1.53428 1.57528 2.19417 2.33494 2.40756 2.75583 2.87691 3.52917 3.58151 3.60488 3.78978 3.87733 3.89617 3.98762 4.31794 4.34751 4.45726 4.46851 4.62924 4.76114 4.96165 5.00860 5.06060 5.17255 5.23565 5.26169 5.35208 5.36848 5.42925 5.65187 5.75976 5.76354 6.12030 6.22642 6.25996 6.62559 6.74980 7.18054 7.25250 8.28715 8.53259 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.031070 B = 0.002376 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.987862 B =11781.111247 C =12154.079109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C 0.062 3.938 4 H 0.118 0.882 5 O -0.323 6.323 6 C 0.525 3.475 7 O -0.542 6.542 8 C -0.187 4.187 9 C -0.020 4.020 10 C -0.175 4.175 11 C 0.210 3.790 12 N -0.685 5.685 13 C 0.525 3.475 14 O -0.604 6.604 15 C -0.559 4.559 16 H 0.098 0.902 17 C 0.028 3.972 18 N -0.813 5.813 19 Si 1.003 2.997 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.245 1.245 23 C -0.168 4.168 24 C -0.034 4.034 25 C 0.498 3.502 26 N -0.823 5.823 27 O -0.584 6.584 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.414 0.586 36 H 0.278 0.722 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.422 0.578 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.013 -23.576 11.992 26.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.143 4.143 3 C 0.004 3.996 4 H 0.136 0.864 5 O -0.239 6.239 6 C 0.373 3.627 7 O -0.434 6.434 8 C -0.189 4.189 9 C -0.038 4.038 10 C -0.196 4.196 11 C 0.110 3.890 12 N -0.329 5.329 13 C 0.333 3.667 14 O -0.489 6.489 15 C -0.595 4.595 16 H 0.116 0.884 17 C -0.189 4.189 18 N -0.441 5.441 19 Si 0.821 3.179 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.168 1.168 23 C -0.189 4.189 24 C -0.053 4.053 25 C 0.282 3.718 26 N -0.389 5.389 27 O -0.464 6.464 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.143 0.857 33 H 0.184 0.816 34 H 0.182 0.818 35 H 0.251 0.749 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.255 0.745 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.082 -22.495 12.202 25.675 hybrid contribution 0.118 0.865 -0.155 0.887 sum -1.964 -21.630 12.047 24.836 Atomic orbital electron populations 1.21803 0.93632 1.03579 1.02308 1.21751 0.98032 0.88792 1.05753 1.23082 0.91129 0.98000 0.87407 0.86418 1.86643 1.78426 1.21435 1.37351 1.21166 0.72212 0.80940 0.88419 1.90762 1.50774 1.68838 1.33041 1.18931 1.14064 0.93215 0.92704 1.21400 0.91836 1.00994 0.89611 1.21166 1.05916 0.91736 1.00754 1.18507 0.91460 0.92370 0.86660 1.43782 1.53220 1.15519 1.20342 1.18824 0.80919 0.79703 0.87278 1.90628 1.38961 1.69615 1.49704 1.21432 1.29345 0.98660 1.10048 0.88368 1.27052 0.92982 0.98690 1.00167 1.70150 1.24760 1.14031 1.35199 0.84935 0.78373 0.77689 0.76857 1.18565 1.19981 1.16790 1.21022 1.05743 1.00312 0.91817 1.20982 0.93773 0.92612 0.97969 1.21218 0.91328 0.77090 0.82211 1.43547 1.12382 1.60657 1.22353 1.90804 1.66430 1.46816 1.42335 0.89740 0.91978 0.93377 0.89989 0.85655 0.81574 0.81799 0.74870 0.91178 0.87374 0.85407 0.74532 0.75539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.81 71.98 0.71 -0.82 16 2 C -0.11 -1.04 5.59 30.60 0.17 -0.87 16 3 C 0.06 1.21 2.37 29.85 0.07 1.28 16 4 H 0.12 2.18 7.16 -2.39 -0.02 2.16 16 5 O -0.32 -8.83 8.21 -50.23 -0.41 -9.24 16 6 C 0.52 17.79 7.82 70.25 0.55 18.34 16 7 O -0.54 -20.48 15.60 19.81 0.31 -20.17 16 8 C -0.19 -6.59 5.88 -20.07 -0.12 -6.71 16 9 C -0.02 -0.59 9.60 22.51 0.22 -0.37 16 10 C -0.17 -5.52 9.94 22.37 0.22 -5.30 16 11 C 0.21 8.66 6.27 38.49 0.24 8.90 16 12 N -0.69 -29.95 5.30 -307.52 -1.63 -31.58 16 13 C 0.53 29.36 7.46 86.31 0.64 30.01 16 14 O -0.60 -39.22 12.69 -4.41 -0.06 -39.28 16 15 C -0.56 -30.06 9.54 24.80 0.24 -29.82 16 16 H 0.10 4.60 7.85 -2.91 -0.02 4.57 16 17 C 0.03 1.48 5.50 85.33 0.47 1.95 16 18 N -0.81 -48.38 11.82 21.85 0.26 -48.12 16 19 Si 1.00 39.15 29.56 68.60 2.03 41.18 16 20 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 21 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.24 -8.76 7.11 99.48 0.71 -8.05 16 23 C -0.17 -7.57 8.62 22.37 0.19 -7.38 16 24 C -0.03 -1.37 9.58 22.51 0.22 -1.16 16 25 C 0.50 11.18 7.48 87.66 0.66 11.84 16 26 N -0.82 -8.81 8.73 -173.53 -1.52 -10.33 16 27 O -0.58 -20.35 17.31 15.75 0.27 -20.08 16 28 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.67 7.82 -2.39 -0.02 0.65 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.13 0.26 7.43 -2.39 -0.02 0.24 16 33 H 0.17 3.82 7.60 -2.91 -0.02 3.80 16 34 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.41 14.60 8.79 -92.71 -0.81 13.78 16 36 H 0.28 15.02 8.29 -92.71 -0.77 14.25 16 37 H 0.11 5.71 6.41 -2.91 -0.02 5.69 16 38 H 0.13 5.03 7.64 -2.91 -0.02 5.01 16 39 H 0.42 0.92 8.19 -92.71 -0.76 0.16 16 40 H 0.41 3.85 8.93 -92.71 -0.83 3.02 16 Total: -1.00 -87.92 354.60 2.46 -85.47 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -1.27 Total: 32.27 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 4.47 Total: 19.89 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -2.89 Total: -90.03 kcal Atomic # 8 Polarization: -88.88 SS G_CDS: 0.11 Total: -88.77 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -87.92 2.46 -85.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726992373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.711 kcal (2) G-P(sol) polarization free energy of solvation -87.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds