Wall clock time and date at job start Tue Mar 31 2020 12:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50695 * 120.00598 * 2 1 4 4 C 1.31001 * 119.99599 * 180.02562 * 2 1 3 5 5 C 1.50703 * 120.00400 * 353.82403 * 4 2 1 6 6 S 1.80997 * 109.47379 * 115.52566 * 5 4 2 7 7 C 1.76193 * 100.00030 * 180.02562 * 6 5 4 8 8 C 1.39052 * 120.18999 * 0.02562 * 7 6 5 9 9 C 1.37903 * 120.06586 * 180.02562 * 8 7 6 10 10 C 1.38669 * 120.44489 * 359.97070 * 9 8 7 11 11 C 1.37709 * 120.38177 * 359.97438 * 10 9 8 12 12 C 1.39812 * 119.92617 * 0.02562 * 11 10 9 13 13 C 1.47234 * 120.21835 * 179.97438 * 12 11 10 14 14 O 1.21531 * 119.99700 * 180.02562 * 13 12 11 15 15 O 1.34776 * 120.00481 * 359.97438 * 13 12 11 16 16 C 1.45197 * 117.00264 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47136 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47252 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99509 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00048 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99974 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99881 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47486 * 90.00360 * 22 20 18 24 24 H 1.48505 * 109.46928 * 210.00072 * 22 20 18 25 25 H 1.48495 * 109.47084 * 329.99677 * 22 20 18 26 26 H 1.09004 * 109.46804 * 265.10929 * 1 2 3 27 27 H 1.09003 * 109.46544 * 25.10057 * 1 2 3 28 28 H 1.08996 * 109.47314 * 145.10449 * 1 2 3 29 29 H 1.09001 * 109.47152 * 240.00322 * 3 2 1 30 30 H 1.09007 * 109.46834 * 359.97438 * 3 2 1 31 31 H 1.08992 * 109.47613 * 119.99865 * 3 2 1 32 32 H 1.08008 * 120.00140 * 173.82880 * 4 2 1 33 33 H 1.09004 * 109.46670 * 355.52946 * 5 4 2 34 34 H 1.08997 * 109.47024 * 235.53414 * 5 4 2 35 35 H 1.07999 * 119.96669 * 0.02562 * 8 7 6 36 36 H 1.07994 * 119.77484 * 180.02562 * 9 8 7 37 37 H 1.08005 * 119.80730 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.03378 * 179.74657 * 11 10 9 39 39 H 1.08997 * 109.47270 * 300.00342 * 16 15 13 40 40 H 1.08997 * 109.47065 * 60.00768 * 16 15 13 41 41 H 1.08999 * 109.47418 * 300.00145 * 17 16 15 42 42 H 1.09002 * 109.47381 * 60.00180 * 17 16 15 43 43 H 0.96994 * 119.99688 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1619 -1.1345 -0.0005 5 6 1.4150 -2.4359 0.1393 6 16 1.6074 -3.4079 -1.3754 7 6 0.6618 -4.8317 -0.9475 8 6 0.0427 -4.9124 0.2949 9 6 -0.6964 -6.0282 0.6273 10 6 -0.8292 -7.0763 -0.2709 11 6 -0.2247 -7.0152 -1.5068 12 6 0.5282 -5.8914 -1.8602 13 6 1.1776 -5.8195 -3.1796 14 8 1.8316 -4.8409 -3.4824 15 8 1.0479 -6.8393 -4.0511 16 6 1.7148 -6.6997 -5.3333 17 6 1.4550 -7.9462 -6.1817 18 6 2.1477 -7.8016 -7.5122 19 1 2.7161 -6.9096 -7.7309 20 6 2.0550 -8.8074 -8.4506 21 7 2.6592 -8.6810 -9.6120 22 14 1.0702 -10.3492 -8.0731 23 1 -0.3372 -10.1558 -8.5052 24 1 1.6575 -11.5024 -8.8014 25 1 1.1076 -10.6151 -6.6126 26 1 -0.3633 -0.0876 1.0240 27 1 -0.3632 0.9307 -0.4360 28 1 -0.3634 -0.8428 -0.5879 29 1 2.8872 1.3627 -0.8900 30 1 1.5523 2.1336 -0.0005 31 1 2.8872 1.3627 0.8899 32 1 3.2373 -1.1373 -0.1011 33 1 0.3576 -2.2316 0.3080 34 1 1.8160 -2.9961 0.9840 35 1 0.1406 -4.1005 1.0002 36 1 -1.1756 -6.0858 1.5934 37 1 -1.4100 -7.9455 0.0003 38 1 -0.3285 -7.8364 -2.2005 39 1 1.3281 -5.8216 -5.8503 40 1 2.7870 -6.5850 -5.1745 41 1 1.8414 -8.8246 -5.6649 42 1 0.3827 -8.0606 -6.3405 43 1 2.5943 -9.3888 -10.2720 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741370004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:41 Heat of formation + Delta-G solvation = -55.473204 kcal Electronic energy + Delta-G solvation = -23201.368895 eV Core-core repulsion = 19723.933312 eV Total energy + Delta-G solvation = -3477.435583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.123 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.26510 -38.68905 -37.18840 -36.16191 -33.32000 -31.92248 -31.50467 -30.63823 -30.34897 -28.11860 -25.71786 -25.04042 -23.78056 -22.93723 -20.95140 -20.55513 -18.54524 -17.89225 -17.39027 -16.81861 -16.19734 -16.03808 -15.75988 -15.40545 -15.10485 -14.76723 -14.62120 -14.19589 -14.03434 -13.80698 -13.64520 -13.14351 -13.05539 -12.79257 -12.64424 -12.49822 -12.24792 -12.06013 -11.80197 -11.55003 -11.50598 -11.31308 -11.25370 -10.94701 -10.69829 -10.28911 -9.95835 -9.94008 -9.70524 -9.70068 -9.34156 -9.26430 -8.85781 -8.61661 -7.50648 -6.12131 -4.13210 0.54635 1.01328 1.16124 2.03542 2.40805 2.66915 3.07420 3.28229 3.35524 3.39702 3.58590 4.34319 4.39067 4.51645 4.57775 4.69577 4.74331 4.82108 4.96019 5.11001 5.12155 5.18121 5.21315 5.21354 5.33105 5.38111 5.39549 5.49473 5.63211 5.66019 5.67821 5.90013 5.98622 5.99212 6.02304 6.18392 6.29222 6.46239 6.51001 6.55266 6.75964 7.18284 7.22483 7.62968 8.09365 8.40664 8.89832 9.47326 11.00469 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002692 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.165481 B =10397.838809 C =11882.018633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C -0.118 4.118 4 C -0.153 4.153 5 C -0.139 4.139 6 S 0.013 5.987 7 C -0.047 4.047 8 C -0.153 4.153 9 C -0.068 4.068 10 C -0.145 4.145 11 C -0.040 4.040 12 C -0.115 4.115 13 C 0.495 3.505 14 O -0.487 6.487 15 O -0.355 6.355 16 C 0.084 3.916 17 C -0.009 4.009 18 C -0.527 4.527 19 H 0.076 0.924 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.881 3.119 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.263 1.263 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.028 0.972 42 H 0.024 0.976 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 12.755 26.425 30.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.116 4.116 3 C -0.175 4.175 4 C -0.172 4.172 5 C -0.285 4.285 6 S 0.264 5.736 7 C -0.161 4.161 8 C -0.177 4.177 9 C -0.088 4.088 10 C -0.166 4.166 11 C -0.059 4.059 12 C -0.123 4.123 13 C 0.339 3.661 14 O -0.378 6.378 15 O -0.271 6.271 16 C 0.011 3.989 17 C -0.046 4.046 18 C -0.565 4.565 19 H 0.094 0.906 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.708 3.292 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.188 1.188 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.189 13.345 25.062 29.060 hybrid contribution -1.072 -1.195 1.097 1.944 sum -7.261 12.150 26.159 29.743 Atomic orbital electron populations 1.20972 0.92273 1.02944 1.02034 1.21675 0.95948 0.95004 0.98937 1.20849 0.99938 0.94424 1.02305 1.21979 0.99661 0.91486 1.04099 1.23279 1.03904 0.98967 1.02351 1.87493 1.59913 1.09613 1.16630 1.22276 0.99562 0.98192 0.96102 1.21107 1.01088 1.00189 0.95356 1.21262 0.95717 0.92647 0.99160 1.21153 1.01841 0.99612 0.94002 1.21533 0.91955 0.96091 0.96351 1.18833 1.04593 0.96400 0.92494 1.20913 0.78684 0.81400 0.85059 1.90748 1.38376 1.31976 1.76655 1.86528 1.69437 1.42931 1.28219 1.23418 0.96140 1.01727 0.77595 1.19629 0.97887 0.92436 0.94693 1.20837 1.32783 1.05906 0.96927 0.90615 1.24939 0.95128 0.98315 0.94657 1.69896 1.43315 1.34019 1.06258 0.86750 0.80490 0.82803 0.79161 1.20061 1.21175 1.18760 0.91451 0.91566 0.91180 0.91266 0.91818 0.91440 0.86387 0.88839 0.88888 0.85010 0.85288 0.84998 0.83716 0.91568 0.91533 0.95369 0.95801 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 8.89 36.01 0.32 -0.58 16 2 C -0.11 -0.91 6.05 -101.07 -0.61 -1.52 16 3 C -0.12 -0.77 10.04 36.00 0.36 -0.41 16 4 C -0.15 -1.39 9.15 -36.03 -0.33 -1.72 16 5 C -0.14 -1.29 4.23 36.01 0.15 -1.14 16 6 S 0.01 0.18 18.96 -107.50 -2.04 -1.86 16 7 C -0.05 -0.62 6.16 -38.43 -0.24 -0.86 16 8 C -0.15 -1.53 9.17 -39.40 -0.36 -1.89 16 9 C -0.07 -0.58 10.03 -39.54 -0.40 -0.98 16 10 C -0.14 -1.37 10.02 -39.62 -0.40 -1.76 16 11 C -0.04 -0.49 9.61 -39.19 -0.38 -0.87 16 12 C -0.11 -1.72 5.89 -104.81 -0.62 -2.34 16 13 C 0.50 9.11 7.87 34.39 0.27 9.38 16 14 O -0.49 -9.86 13.56 -19.29 -0.26 -10.12 16 15 O -0.35 -6.96 9.47 -40.70 -0.39 -7.34 16 16 C 0.08 1.83 5.42 37.16 0.20 2.03 16 17 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 18 C -0.53 -15.08 9.66 -34.44 -0.33 -15.41 16 19 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 20 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 21 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 22 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.42 7.95 -51.93 -0.41 0.01 16 28 H 0.07 0.56 6.66 -51.93 -0.35 0.22 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.35 7.88 -51.93 -0.41 -0.06 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.12 1.06 8.05 -52.48 -0.42 0.63 16 33 H 0.09 0.77 5.12 -51.91 -0.27 0.50 16 34 H 0.09 0.76 7.54 -51.92 -0.39 0.37 16 35 H 0.13 1.01 5.50 -52.49 -0.29 0.72 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.15 1.72 7.61 -52.48 -0.40 1.32 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 42 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -32.52 370.43 -9.82 -42.34 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.25 Total: -2.27 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.57 Total: -16.41 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.77 Total: -26.72 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.65 Total: -17.46 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.04 Total: -1.86 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.52 -9.82 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741370004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.135 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds