Wall clock time and date at job start Tue Mar 31 2020 12:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50695 * 120.00598 * 2 1 4 4 C 1.31001 * 119.99599 * 180.02562 * 2 1 3 5 5 C 1.50703 * 120.00400 * 353.82403 * 4 2 1 6 6 S 1.80997 * 109.47379 * 115.52566 * 5 4 2 7 7 C 1.76193 * 100.00030 * 180.02562 * 6 5 4 8 8 C 1.39052 * 120.18999 * 0.02562 * 7 6 5 9 9 C 1.37903 * 120.06586 * 180.02562 * 8 7 6 10 10 C 1.38669 * 120.44489 * 359.97070 * 9 8 7 11 11 C 1.37709 * 120.38177 * 359.97438 * 10 9 8 12 12 C 1.39812 * 119.92617 * 0.02562 * 11 10 9 13 13 C 1.47234 * 120.21835 * 179.97438 * 12 11 10 14 14 O 1.21531 * 119.99700 * 180.02562 * 13 12 11 15 15 O 1.34776 * 120.00481 * 359.97438 * 13 12 11 16 16 C 1.45197 * 117.00264 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47136 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47252 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99509 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00048 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99974 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99881 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47486 * 90.00360 * 22 20 18 24 24 H 1.48505 * 109.46928 * 210.00072 * 22 20 18 25 25 H 1.48495 * 109.47084 * 329.99677 * 22 20 18 26 26 H 1.09004 * 109.46804 * 265.10929 * 1 2 3 27 27 H 1.09003 * 109.46544 * 25.10057 * 1 2 3 28 28 H 1.08996 * 109.47314 * 145.10449 * 1 2 3 29 29 H 1.09001 * 109.47152 * 240.00322 * 3 2 1 30 30 H 1.09007 * 109.46834 * 359.97438 * 3 2 1 31 31 H 1.08992 * 109.47613 * 119.99865 * 3 2 1 32 32 H 1.08008 * 120.00140 * 173.82880 * 4 2 1 33 33 H 1.09004 * 109.46670 * 355.52946 * 5 4 2 34 34 H 1.08997 * 109.47024 * 235.53414 * 5 4 2 35 35 H 1.07999 * 119.96669 * 0.02562 * 8 7 6 36 36 H 1.07994 * 119.77484 * 180.02562 * 9 8 7 37 37 H 1.08005 * 119.80730 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.03378 * 179.74657 * 11 10 9 39 39 H 1.08997 * 109.47270 * 300.00342 * 16 15 13 40 40 H 1.08997 * 109.47065 * 60.00768 * 16 15 13 41 41 H 1.08999 * 109.47418 * 300.00145 * 17 16 15 42 42 H 1.09002 * 109.47381 * 60.00180 * 17 16 15 43 43 H 0.96994 * 119.99688 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1619 -1.1345 -0.0005 5 6 1.4150 -2.4359 0.1393 6 16 1.6074 -3.4079 -1.3754 7 6 0.6618 -4.8317 -0.9475 8 6 0.0427 -4.9124 0.2949 9 6 -0.6964 -6.0282 0.6273 10 6 -0.8292 -7.0763 -0.2709 11 6 -0.2247 -7.0152 -1.5068 12 6 0.5282 -5.8914 -1.8602 13 6 1.1776 -5.8195 -3.1796 14 8 1.8316 -4.8409 -3.4824 15 8 1.0479 -6.8393 -4.0511 16 6 1.7148 -6.6997 -5.3333 17 6 1.4550 -7.9462 -6.1817 18 6 2.1477 -7.8016 -7.5122 19 1 2.7161 -6.9096 -7.7309 20 6 2.0550 -8.8074 -8.4506 21 7 2.6592 -8.6810 -9.6120 22 14 1.0702 -10.3492 -8.0731 23 1 -0.3372 -10.1558 -8.5052 24 1 1.6575 -11.5024 -8.8014 25 1 1.1076 -10.6151 -6.6126 26 1 -0.3633 -0.0876 1.0240 27 1 -0.3632 0.9307 -0.4360 28 1 -0.3634 -0.8428 -0.5879 29 1 2.8872 1.3627 -0.8900 30 1 1.5523 2.1336 -0.0005 31 1 2.8872 1.3627 0.8899 32 1 3.2373 -1.1373 -0.1011 33 1 0.3576 -2.2316 0.3080 34 1 1.8160 -2.9961 0.9840 35 1 0.1406 -4.1005 1.0002 36 1 -1.1756 -6.0858 1.5934 37 1 -1.4100 -7.9455 0.0003 38 1 -0.3285 -7.8364 -2.2005 39 1 1.3281 -5.8216 -5.8503 40 1 2.7870 -6.5850 -5.1745 41 1 1.8414 -8.8246 -5.6649 42 1 0.3827 -8.0606 -6.3405 43 1 2.5943 -9.3888 -10.2720 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741370004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:40 Heat of formation + Delta-G solvation = -71.890517 kcal Electronic energy + Delta-G solvation = -23202.080803 eV Core-core repulsion = 19723.933312 eV Total energy + Delta-G solvation = -3478.147491 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.123 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.60729 -39.69559 -37.88247 -37.65173 -35.42027 -33.12543 -32.49427 -32.20231 -31.08730 -28.66961 -27.49099 -25.87220 -24.98400 -23.77903 -22.69915 -21.98099 -19.55525 -19.13820 -18.66601 -18.22064 -17.60448 -17.58973 -16.57764 -16.33022 -16.16649 -16.02941 -15.48869 -15.41954 -15.32495 -14.96272 -14.67446 -14.40158 -14.22667 -14.08499 -13.45741 -13.29302 -13.24323 -13.20871 -12.87619 -12.78171 -12.58509 -12.50700 -12.44337 -12.29653 -11.97907 -11.83300 -11.80444 -11.56916 -11.48650 -10.83675 -10.82750 -10.74918 -10.14702 -9.57842 -8.50652 -8.35805 -6.44429 -0.43752 0.19716 0.32073 1.20011 1.37027 1.39080 1.46862 1.51882 1.59479 1.74067 2.33426 2.65982 2.98709 3.54988 3.69558 3.76411 3.95942 4.04040 4.11083 4.12791 4.15935 4.27988 4.34743 4.38272 4.45752 4.48399 4.58758 4.68140 4.79014 4.83588 4.86269 4.93776 4.98047 5.09510 5.09778 5.11514 5.24973 5.25524 5.38715 5.45650 5.49889 5.66491 5.80100 5.87033 6.13876 6.61080 6.63509 7.20427 8.80419 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002692 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.165481 B =10397.838809 C =11882.018633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 C -0.121 4.121 4 C -0.177 4.177 5 C -0.110 4.110 6 S -0.073 6.073 7 C -0.051 4.051 8 C -0.150 4.150 9 C -0.049 4.049 10 C -0.136 4.136 11 C -0.049 4.049 12 C -0.149 4.149 13 C 0.488 3.512 14 O -0.517 6.517 15 O -0.354 6.354 16 C 0.096 3.904 17 C -0.001 4.001 18 C -0.544 4.544 19 H 0.033 0.967 20 C 0.011 3.989 21 N -0.944 5.944 22 Si 0.956 3.044 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.243 1.243 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.158 0.842 36 H 0.175 0.825 37 H 0.167 0.833 38 H 0.143 0.857 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.922 11.860 30.472 34.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.108 4.108 3 C -0.177 4.177 4 C -0.196 4.196 5 C -0.257 4.257 6 S 0.178 5.822 7 C -0.166 4.166 8 C -0.174 4.174 9 C -0.069 4.069 10 C -0.156 4.156 11 C -0.069 4.069 12 C -0.157 4.157 13 C 0.334 3.666 14 O -0.408 6.408 15 O -0.271 6.271 16 C 0.023 3.977 17 C -0.038 4.038 18 C -0.581 4.581 19 H 0.051 0.949 20 C -0.187 4.187 21 N -0.583 5.583 22 Si 0.778 3.222 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.167 1.167 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.175 0.825 36 H 0.192 0.808 37 H 0.185 0.815 38 H 0.161 0.839 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.966 12.456 29.129 32.924 hybrid contribution -0.209 -0.745 -0.036 0.775 sum -9.175 11.710 29.093 32.676 Atomic orbital electron populations 1.21026 0.91409 1.02973 1.03037 1.21984 0.96754 0.95274 0.96771 1.20911 1.00229 0.94049 1.02561 1.22008 0.99610 0.91853 1.06163 1.23199 1.04885 0.98004 0.99566 1.87714 1.61169 1.12120 1.21229 1.22337 1.00057 0.97025 0.97165 1.21501 1.00162 1.01602 0.94154 1.21815 0.93658 0.90965 1.00442 1.21574 1.00630 1.00943 0.92463 1.21660 0.92171 0.95147 0.97926 1.18787 1.07012 0.98756 0.91125 1.21711 0.78438 0.80473 0.85954 1.90752 1.39767 1.32817 1.77499 1.86500 1.69306 1.43899 1.27351 1.22958 0.95669 1.00283 0.78837 1.19452 0.97872 0.93591 0.92908 1.21093 1.32938 1.04763 0.99349 0.94851 1.25981 0.96260 1.02317 0.94148 1.70045 1.45048 1.35639 1.07613 0.85578 0.78922 0.77616 0.80109 1.18672 1.20466 1.16657 0.89616 0.90701 0.92249 0.91756 0.90550 0.90410 0.87028 0.87359 0.87537 0.82459 0.80783 0.81540 0.83937 0.92634 0.92655 0.94512 0.94599 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.89 71.24 0.63 -0.94 16 2 C -0.10 -1.55 6.05 -16.49 -0.10 -1.65 16 3 C -0.12 -1.42 10.04 71.23 0.72 -0.70 16 4 C -0.18 -3.12 9.15 25.65 0.23 -2.89 16 5 C -0.11 -1.92 4.23 71.24 0.30 -1.62 16 6 S -0.07 -2.07 18.96 -56.49 -1.07 -3.14 16 7 C -0.05 -1.33 6.16 23.01 0.14 -1.19 16 8 C -0.15 -2.50 9.17 22.39 0.21 -2.30 16 9 C -0.05 -0.59 10.03 22.29 0.22 -0.37 16 10 C -0.14 -1.99 10.02 22.25 0.22 -1.77 16 11 C -0.05 -1.14 9.61 22.53 0.22 -0.92 16 12 C -0.15 -4.47 5.89 -19.98 -0.12 -4.59 16 13 C 0.49 18.84 7.87 70.19 0.55 19.39 16 14 O -0.52 -22.44 13.56 19.73 0.27 -22.17 16 15 O -0.35 -14.34 9.47 -56.87 -0.54 -14.88 16 16 C 0.10 4.39 5.42 71.98 0.39 4.78 16 17 C 0.00 -0.04 4.42 29.85 0.13 0.09 16 18 C -0.54 -32.33 9.66 25.60 0.25 -32.08 16 19 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 20 C 0.01 0.65 5.47 84.65 0.46 1.11 16 21 N -0.94 -59.57 13.96 21.45 0.30 -59.28 16 22 Si 0.96 43.95 27.47 68.60 1.88 45.83 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 26 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 0.80 7.95 -2.39 -0.02 0.78 16 28 H 0.06 0.88 6.66 -2.39 -0.02 0.86 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.70 7.88 -2.38 -0.02 0.68 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 2.06 8.05 -2.91 -0.02 2.04 16 33 H 0.11 1.54 5.12 -2.39 -0.01 1.52 16 34 H 0.11 1.53 7.54 -2.40 -0.02 1.51 16 35 H 0.16 1.75 5.50 -2.91 -0.02 1.74 16 36 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 37 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.14 3.24 7.61 -2.91 -0.02 3.22 16 39 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.04 1.75 7.20 -2.39 -0.02 1.73 16 42 H 0.04 1.68 7.57 -2.39 -0.02 1.66 16 43 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -75.45 370.43 6.25 -69.20 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.95 Total: 10.08 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 4.46 Total: -25.65 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.30 Total: -59.28 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.27 Total: -37.05 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 16 Polarization: -2.07 SS G_CDS: -1.07 Total: -3.14 kcal Total: -75.45 6.25 -69.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741370004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.691 kcal (2) G-P(sol) polarization free energy of solvation -75.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds