Wall clock time and date at job start Tue Mar 31 2020 12:58:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53002 * 109.47068 * 2 1
4 4 S 1.81393 * 109.47299 * 120.00448 * 2 1 3
5 5 C 1.76203 * 103.00167 * 71.03094 * 4 2 1
6 6 C 1.39317 * 119.92890 * 7.75361 * 5 4 2
7 7 C 1.36591 * 120.06982 * 180.23432 * 6 5 4
8 8 C 1.39901 * 119.92478 * 359.46981 * 7 6 5
9 9 C 1.47342 * 120.06486 * 180.25836 * 8 7 6
10 10 O 1.21515 * 120.00176 * 354.81752 * 9 8 7
11 11 O 1.34773 * 119.99811 * 174.82386 * 9 8 7
12 12 C 1.45196 * 116.99825 * 185.12472 * 11 9 8
13 13 C 1.53004 * 109.47187 * 184.91492 * 12 11 9
14 14 C 1.50705 * 115.54986 * 306.30376 * 13 12 11
15 15 H 1.07994 * 120.00178 * 144.22906 * 14 13 12
16 16 C 1.37872 * 119.99683 * 324.22349 * 14 13 12
17 17 N 1.31516 * 120.00180 * 3.26112 * 16 14 13
18 18 Si 1.86801 * 119.99903 * 183.26149 * 16 14 13
19 19 H 1.48497 * 109.47329 * 59.99998 * 18 16 14
20 20 H 1.48501 * 109.47178 * 180.02562 * 18 16 14
21 21 H 1.48504 * 109.47302 * 300.00119 * 18 16 14
22 22 C 1.52999 * 117.50021 * 160.62448 * 13 12 11
23 23 C 1.53004 * 117.49385 * 91.96659 * 13 12 11
24 24 C 1.39900 * 119.86594 * 0.27809 * 8 7 6
25 25 C 1.36591 * 119.92727 * 359.97438 * 24 8 7
26 26 H 1.08993 * 109.47219 * 175.16640 * 1 2 3
27 27 H 1.09002 * 109.46615 * 295.16434 * 1 2 3
28 28 H 1.09005 * 109.46877 * 55.15786 * 1 2 3
29 29 H 1.09002 * 109.46838 * 240.00264 * 2 1 3
30 30 H 1.09001 * 109.46502 * 180.02562 * 3 2 1
31 31 H 1.08997 * 109.47226 * 300.00140 * 3 2 1
32 32 H 1.08996 * 109.47303 * 60.00778 * 3 2 1
33 33 H 1.08006 * 119.96834 * 359.97438 * 6 5 4
34 34 H 1.07999 * 120.04166 * 179.74525 * 7 6 5
35 35 H 1.08989 * 109.47386 * 304.91502 * 12 11 9
36 36 H 1.09002 * 109.47361 * 64.91964 * 12 11 9
37 37 H 0.97003 * 119.99675 * 184.99814 * 17 16 14
38 38 H 1.08995 * 117.49712 * 0.02562 * 22 13 12
39 39 H 1.09002 * 117.49800 * 145.02225 * 22 13 12
40 40 H 1.09008 * 117.49384 * 214.98151 * 23 13 12
41 41 H 1.08998 * 117.50401 * 359.97438 * 23 13 12
42 42 H 1.07996 * 120.03662 * 180.02562 * 24 8 7
43 43 H 1.07997 * 119.96235 * 179.97438 * 25 24 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 16 2.1348 -0.8552 1.4810
5 6 1.7408 -2.5412 1.1538
6 6 1.2595 -2.9119 -0.0999
7 6 0.9486 -4.2172 -0.3551
8 6 1.1245 -5.1841 0.6406
9 6 0.7956 -6.5940 0.3668
10 8 0.2833 -6.9041 -0.6906
11 8 1.0627 -7.5396 1.2892
12 6 0.8185 -8.9193 0.9084
13 6 1.0599 -9.8312 2.1131
14 6 2.4021 -9.6826 2.7822
15 1 2.4853 -9.7840 3.8541
16 6 3.5238 -9.4175 2.0256
17 7 3.4131 -9.2307 0.7285
18 14 5.2009 -9.3237 2.8430
19 1 5.5069 -10.6221 3.4955
20 1 6.2348 -9.0280 1.8189
21 1 5.1941 -8.2459 3.8645
22 6 0.4396 -11.2293 2.0764
23 6 -0.1408 -10.1583 3.0032
24 6 1.6130 -4.8095 1.8969
25 6 1.9171 -3.5017 2.1475
26 1 -0.3633 -1.0239 -0.0866
27 1 -0.3632 0.4370 0.9302
28 1 -0.3633 0.5872 -0.8435
29 1 1.8934 -0.5138 -0.8900
30 1 3.1301 1.4424 -0.0005
31 1 1.6767 1.9564 -0.8899
32 1 1.6769 1.9563 0.8900
33 1 1.1281 -2.1656 -0.8696
34 1 0.5717 -4.5034 -1.3259
35 1 -0.2128 -9.0265 0.5726
36 1 1.4947 -9.1984 0.1004
37 1 4.2086 -9.1163 0.1854
38 1 -0.1400 -11.4997 1.1938
39 1 1.0022 -12.0417 2.5364
40 1 0.0402 -10.2665 4.0727
41 1 -1.1026 -9.7235 2.7309
42 1 1.7502 -5.5536 2.6674
43 1 2.2938 -3.2118 3.1173
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000744276357.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:58:58
Heat of formation + Delta-G solvation = -39.996919 kcal
Electronic energy + Delta-G solvation = -24118.897664 eV
Core-core repulsion = 20642.133184 eV
Total energy + Delta-G solvation = -3476.764481 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.123 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-39.84375 -38.42777 -36.66264 -35.27930 -34.93944 -32.17715 -31.36638 -31.07970
-27.65791 -26.64651 -25.43707 -23.96553 -22.97480 -21.74575 -21.26849 -20.31225
-19.16667 -17.81562 -17.11948 -16.70379 -16.29740 -15.57710 -15.28170 -15.06693
-14.69413 -14.58393 -14.26049 -13.87545 -13.77646 -13.38069 -13.27503 -12.93671
-12.87449 -12.66286 -12.03524 -11.95904 -11.74945 -11.69912 -11.47903 -11.28839
-11.12219 -11.02528 -10.82354 -10.51386 -10.35036 -10.23774 -9.98142 -9.72779
-9.50938 -9.38150 -9.07523 -8.97685 -8.75063 -8.24039 -7.54166 -6.00324
-4.12339 0.75414 1.28371 1.43905 2.16957 3.01145 3.28369 3.34482
3.36089 3.57328 4.01762 4.34425 4.35759 4.42968 4.73124 4.83025
4.90916 4.96040 5.17359 5.28430 5.32190 5.34314 5.39728 5.44312
5.47113 5.56354 5.67800 5.70565 5.80816 6.00038 6.04389 6.17151
6.22645 6.31805 6.47482 6.50959 6.63389 6.66647 6.80812 6.83143
6.98566 7.23245 7.45738 7.56531 7.89877 8.31818 8.67183 8.86382
9.49966 10.96241
Molecular weight = 320.12amu
Principal moments of inertia in cm(-1)
A = 0.017537 B = 0.003191 C = 0.002905
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1596.216372 B = 8773.251401 C = 9634.935386
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.085 4.085
3 C -0.133 4.133
4 S -0.114 6.114
5 C -0.060 4.060
6 C -0.150 4.150
7 C -0.042 4.042
8 C -0.114 4.114
9 C 0.501 3.499
10 O -0.529 6.529
11 O -0.312 6.312
12 C 0.121 3.879
13 C 0.045 3.955
14 C -0.480 4.480
15 H 0.061 0.939
16 C 0.074 3.926
17 N -0.883 5.883
18 Si 0.897 3.103
19 H -0.277 1.277
20 H -0.287 1.287
21 H -0.275 1.275
22 C -0.195 4.195
23 C -0.210 4.210
24 C -0.039 4.039
25 C -0.115 4.115
26 H 0.065 0.935
27 H 0.069 0.931
28 H 0.066 0.934
29 H 0.095 0.905
30 H 0.066 0.934
31 H 0.073 0.927
32 H 0.065 0.935
33 H 0.130 0.870
34 H 0.138 0.862
35 H 0.023 0.977
36 H 0.116 0.884
37 H 0.262 0.738
38 H 0.067 0.933
39 H 0.084 0.916
40 H 0.078 0.922
41 H 0.068 0.932
42 H 0.150 0.850
43 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.822 18.396 -1.576 18.855
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.213 4.213
3 C -0.192 4.192
4 S 0.131 5.869
5 C -0.173 4.173
6 C -0.173 4.173
7 C -0.062 4.062
8 C -0.117 4.117
9 C 0.346 3.654
10 O -0.422 6.422
11 O -0.226 6.226
12 C 0.048 3.952
13 C 0.045 3.955
14 C -0.518 4.518
15 H 0.080 0.920
16 C -0.128 4.128
17 N -0.521 5.521
18 Si 0.725 3.275
19 H -0.203 1.203
20 H -0.212 1.212
21 H -0.200 1.200
22 C -0.233 4.233
23 C -0.247 4.247
24 C -0.059 4.059
25 C -0.138 4.138
26 H 0.084 0.916
27 H 0.088 0.912
28 H 0.085 0.915
29 H 0.113 0.887
30 H 0.085 0.915
31 H 0.092 0.908
32 H 0.084 0.916
33 H 0.147 0.853
34 H 0.156 0.844
35 H 0.041 0.959
36 H 0.134 0.866
37 H 0.073 0.927
38 H 0.086 0.914
39 H 0.102 0.898
40 H 0.097 0.903
41 H 0.087 0.913
42 H 0.168 0.832
43 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -3.297 18.996 -1.062 19.309
hybrid contribution 0.240 -0.839 -0.841 1.212
sum -3.057 18.158 -1.903 18.511
Atomic orbital electron populations
1.22180 0.92590 1.03282 1.03126 1.23411 0.99647 0.99739 0.98535
1.21617 1.01943 0.92603 1.03012 1.85476 1.75636 0.97847 1.27964
1.22006 1.01490 0.96941 0.96849 1.20809 1.03963 0.96802 0.95768
1.20893 0.94996 0.91392 0.98879 1.19427 1.05325 0.91246 0.95737
1.20887 0.75438 0.86844 0.82242 1.90742 1.41819 1.83429 1.26199
1.86531 1.76582 1.18090 1.41354 1.22899 0.97370 0.75079 0.99827
1.18933 0.92121 0.91040 0.93403 1.20422 0.89885 1.48137 0.93310
0.92042 1.24935 0.99246 0.93698 0.94938 1.69781 1.28996 1.48479
1.04850 0.86576 0.83236 0.78632 0.79104 1.20255 1.21212 1.20000
1.22990 1.05133 0.94684 1.00525 1.22961 0.98440 1.06252 0.97032
1.21345 0.92183 0.95967 0.96358 1.20527 1.02471 0.92087 0.98719
0.91588 0.91205 0.91503 0.88654 0.91452 0.90795 0.91571 0.85278
0.84425 0.95926 0.86617 0.92721 0.91413 0.89776 0.90307 0.91299
0.83217 0.84883
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.13 8.85 37.16 0.33 -0.80 16
2 C -0.08 -0.67 2.59 -26.73 -0.07 -0.74 16
3 C -0.13 -0.82 9.20 37.16 0.34 -0.48 16
4 S -0.11 -1.22 21.29 -107.50 -2.29 -3.51 16
5 C -0.06 -0.78 6.07 -38.78 -0.24 -1.02 16
6 C -0.15 -1.92 8.08 -39.78 -0.32 -2.25 16
7 C -0.04 -0.64 9.54 -39.55 -0.38 -1.02 16
8 C -0.11 -2.06 5.88 -104.95 -0.62 -2.68 16
9 C 0.50 11.05 7.87 34.43 0.27 11.32 16
10 O -0.53 -12.50 16.05 -19.28 -0.31 -12.81 16
11 O -0.31 -7.53 8.99 -40.69 -0.37 -7.90 16
12 C 0.12 3.02 4.46 37.16 0.17 3.19 16
13 C 0.05 1.13 2.20 -155.65 -0.34 0.79 16
14 C -0.48 -12.83 8.78 -34.44 -0.30 -13.13 16
15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16
16 C 0.07 1.98 5.34 -17.82 -0.10 1.89 16
17 N -0.88 -24.23 10.23 55.43 0.57 -23.67 16
18 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16
19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
22 C -0.20 -4.32 9.96 -26.69 -0.27 -4.59 16
23 C -0.21 -4.54 9.92 -26.69 -0.26 -4.80 16
24 C -0.04 -0.63 9.56 -39.55 -0.38 -1.01 16
25 C -0.11 -1.61 9.73 -39.77 -0.39 -2.00 16
26 H 0.07 0.56 6.29 -51.93 -0.33 0.24 16
27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
29 H 0.10 0.75 6.68 -51.92 -0.35 0.40 16
30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
33 H 0.13 1.32 4.97 -52.48 -0.26 1.06 16
34 H 0.14 2.02 7.65 -52.49 -0.40 1.62 16
35 H 0.02 0.54 7.91 -51.94 -0.41 0.13 16
36 H 0.12 3.17 5.96 -51.93 -0.31 2.86 16
37 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16
38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16
39 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16
40 H 0.08 1.65 8.14 -51.92 -0.42 1.22 16
41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16
42 H 0.15 2.55 7.61 -52.49 -0.40 2.15 16
43 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16
LS Contribution 370.00 15.07 5.58 5.58
Total: -1.00 -29.29 370.00 -10.62 -39.91
By element:
Atomic # 1 Polarization: 10.22 SS G_CDS: -6.23 Total: 3.99 kcal
Atomic # 6 Polarization: -14.79 SS G_CDS: -2.55 Total: -17.34 kcal
Atomic # 7 Polarization: -24.23 SS G_CDS: 0.57 Total: -23.67 kcal
Atomic # 8 Polarization: -20.04 SS G_CDS: -0.68 Total: -20.71 kcal
Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal
Atomic # 16 Polarization: -1.22 SS G_CDS: -2.29 Total: -3.51 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -29.29 -10.62 -39.91 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000744276357.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.084 kcal
(2) G-P(sol) polarization free energy of solvation -29.292 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.376 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds