Wall clock time and date at job start Tue Mar 31 2020 12:58:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53002 * 109.47068 * 2 1
4 4 S 1.81393 * 109.47299 * 120.00448 * 2 1 3
5 5 C 1.76203 * 103.00167 * 71.03094 * 4 2 1
6 6 C 1.39317 * 119.92890 * 7.75361 * 5 4 2
7 7 C 1.36591 * 120.06982 * 180.23432 * 6 5 4
8 8 C 1.39901 * 119.92478 * 359.46981 * 7 6 5
9 9 C 1.47342 * 120.06486 * 180.25836 * 8 7 6
10 10 O 1.21515 * 120.00176 * 354.81752 * 9 8 7
11 11 O 1.34773 * 119.99811 * 174.82386 * 9 8 7
12 12 C 1.45196 * 116.99825 * 185.12472 * 11 9 8
13 13 C 1.53004 * 109.47187 * 184.91492 * 12 11 9
14 14 C 1.50705 * 115.54986 * 306.30376 * 13 12 11
15 15 H 1.07994 * 120.00178 * 144.22906 * 14 13 12
16 16 C 1.37872 * 119.99683 * 324.22349 * 14 13 12
17 17 N 1.31516 * 120.00180 * 3.26112 * 16 14 13
18 18 Si 1.86801 * 119.99903 * 183.26149 * 16 14 13
19 19 H 1.48497 * 109.47329 * 59.99998 * 18 16 14
20 20 H 1.48501 * 109.47178 * 180.02562 * 18 16 14
21 21 H 1.48504 * 109.47302 * 300.00119 * 18 16 14
22 22 C 1.52999 * 117.50021 * 160.62448 * 13 12 11
23 23 C 1.53004 * 117.49385 * 91.96659 * 13 12 11
24 24 C 1.39900 * 119.86594 * 0.27809 * 8 7 6
25 25 C 1.36591 * 119.92727 * 359.97438 * 24 8 7
26 26 H 1.08993 * 109.47219 * 175.16640 * 1 2 3
27 27 H 1.09002 * 109.46615 * 295.16434 * 1 2 3
28 28 H 1.09005 * 109.46877 * 55.15786 * 1 2 3
29 29 H 1.09002 * 109.46838 * 240.00264 * 2 1 3
30 30 H 1.09001 * 109.46502 * 180.02562 * 3 2 1
31 31 H 1.08997 * 109.47226 * 300.00140 * 3 2 1
32 32 H 1.08996 * 109.47303 * 60.00778 * 3 2 1
33 33 H 1.08006 * 119.96834 * 359.97438 * 6 5 4
34 34 H 1.07999 * 120.04166 * 179.74525 * 7 6 5
35 35 H 1.08989 * 109.47386 * 304.91502 * 12 11 9
36 36 H 1.09002 * 109.47361 * 64.91964 * 12 11 9
37 37 H 0.97003 * 119.99675 * 184.99814 * 17 16 14
38 38 H 1.08995 * 117.49712 * 0.02562 * 22 13 12
39 39 H 1.09002 * 117.49800 * 145.02225 * 22 13 12
40 40 H 1.09008 * 117.49384 * 214.98151 * 23 13 12
41 41 H 1.08998 * 117.50401 * 359.97438 * 23 13 12
42 42 H 1.07996 * 120.03662 * 180.02562 * 24 8 7
43 43 H 1.07997 * 119.96235 * 179.97438 * 25 24 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 16 2.1348 -0.8552 1.4810
5 6 1.7408 -2.5412 1.1538
6 6 1.2595 -2.9119 -0.0999
7 6 0.9486 -4.2172 -0.3551
8 6 1.1245 -5.1841 0.6406
9 6 0.7956 -6.5940 0.3668
10 8 0.2833 -6.9041 -0.6906
11 8 1.0627 -7.5396 1.2892
12 6 0.8185 -8.9193 0.9084
13 6 1.0599 -9.8312 2.1131
14 6 2.4021 -9.6826 2.7822
15 1 2.4853 -9.7840 3.8541
16 6 3.5238 -9.4175 2.0256
17 7 3.4131 -9.2307 0.7285
18 14 5.2009 -9.3237 2.8430
19 1 5.5069 -10.6221 3.4955
20 1 6.2348 -9.0280 1.8189
21 1 5.1941 -8.2459 3.8645
22 6 0.4396 -11.2293 2.0764
23 6 -0.1408 -10.1583 3.0032
24 6 1.6130 -4.8095 1.8969
25 6 1.9171 -3.5017 2.1475
26 1 -0.3633 -1.0239 -0.0866
27 1 -0.3632 0.4370 0.9302
28 1 -0.3633 0.5872 -0.8435
29 1 1.8934 -0.5138 -0.8900
30 1 3.1301 1.4424 -0.0005
31 1 1.6767 1.9564 -0.8899
32 1 1.6769 1.9563 0.8900
33 1 1.1281 -2.1656 -0.8696
34 1 0.5717 -4.5034 -1.3259
35 1 -0.2128 -9.0265 0.5726
36 1 1.4947 -9.1984 0.1004
37 1 4.2086 -9.1163 0.1854
38 1 -0.1400 -11.4997 1.1938
39 1 1.0022 -12.0417 2.5364
40 1 0.0402 -10.2665 4.0727
41 1 -1.1026 -9.7235 2.7309
42 1 1.7502 -5.5536 2.6674
43 1 2.2938 -3.2118 3.1173
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000744276357.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:58:58
Heat of formation + Delta-G solvation = -51.934743 kcal
Electronic energy + Delta-G solvation = -24119.415327 eV
Core-core repulsion = 20642.133184 eV
Total energy + Delta-G solvation = -3477.282144 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.123 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.41308 -39.83343 -38.47187 -36.75614 -35.87797 -34.18481 -32.59343 -32.25717
-28.55697 -28.10337 -27.42881 -25.37313 -23.99632 -23.03575 -22.53406 -21.81190
-21.09695 -19.08951 -18.57270 -18.36176 -17.57359 -17.17650 -16.80420 -16.48955
-16.04725 -15.91348 -15.54912 -15.14732 -14.92797 -14.73355 -14.37149 -14.21254
-14.01834 -13.72326 -13.59976 -13.29411 -13.16512 -12.92181 -12.74548 -12.41338
-12.35504 -12.30533 -12.29292 -12.14253 -12.12773 -11.76769 -11.31474 -11.31121
-11.03983 -10.89442 -10.86062 -10.67444 -10.23324 -10.16541 -8.48773 -8.00679
-6.19065 -0.52340 0.28529 0.41389 1.31906 1.44013 1.44866 1.49530
1.52551 1.96545 2.42977 2.66156 3.04732 3.54740 3.63700 3.75111
3.82472 3.85114 3.87023 4.17779 4.21378 4.24095 4.34106 4.40040
4.48901 4.58048 4.71577 4.75170 4.76913 4.85051 4.86289 4.89853
4.94603 4.95447 5.04231 5.11776 5.19390 5.23390 5.26141 5.31092
5.42501 5.50847 5.63463 5.78338 5.83729 6.32596 6.77470 6.95756
7.45035 8.93536
Molecular weight = 320.12amu
Principal moments of inertia in cm(-1)
A = 0.017537 B = 0.003191 C = 0.002905
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1596.216372 B = 8773.251401 C = 9634.935386
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.082 4.082
3 C -0.132 4.132
4 S -0.111 6.111
5 C -0.053 4.053
6 C -0.140 4.140
7 C -0.040 4.040
8 C -0.147 4.147
9 C 0.496 3.504
10 O -0.556 6.556
11 O -0.326 6.326
12 C 0.130 3.870
13 C 0.006 3.994
14 C -0.496 4.496
15 H 0.057 0.943
16 C 0.031 3.969
17 N -0.906 5.906
18 Si 0.953 3.047
19 H -0.270 1.270
20 H -0.287 1.287
21 H -0.270 1.270
22 C -0.186 4.186
23 C -0.189 4.189
24 C -0.044 4.044
25 C -0.117 4.117
26 H 0.053 0.947
27 H 0.068 0.932
28 H 0.087 0.913
29 H 0.102 0.898
30 H 0.066 0.934
31 H 0.095 0.905
32 H 0.067 0.933
33 H 0.161 0.839
34 H 0.140 0.860
35 H 0.025 0.975
36 H 0.087 0.913
37 H 0.258 0.742
38 H 0.081 0.919
39 H 0.086 0.914
40 H 0.087 0.913
41 H 0.084 0.916
42 H 0.135 0.865
43 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.744 20.970 -1.311 21.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.211 4.211
3 C -0.190 4.190
4 S 0.135 5.865
5 C -0.167 4.167
6 C -0.164 4.164
7 C -0.060 4.060
8 C -0.151 4.151
9 C 0.343 3.657
10 O -0.450 6.450
11 O -0.240 6.240
12 C 0.057 3.943
13 C 0.006 3.994
14 C -0.533 4.533
15 H 0.076 0.924
16 C -0.168 4.168
17 N -0.544 5.544
18 Si 0.779 3.221
19 H -0.196 1.196
20 H -0.213 1.213
21 H -0.195 1.195
22 C -0.224 4.224
23 C -0.226 4.226
24 C -0.065 4.065
25 C -0.141 4.141
26 H 0.072 0.928
27 H 0.087 0.913
28 H 0.106 0.894
29 H 0.120 0.880
30 H 0.085 0.915
31 H 0.113 0.887
32 H 0.086 0.914
33 H 0.178 0.822
34 H 0.158 0.842
35 H 0.044 0.956
36 H 0.104 0.896
37 H 0.068 0.932
38 H 0.100 0.900
39 H 0.104 0.896
40 H 0.105 0.895
41 H 0.102 0.898
42 H 0.153 0.847
43 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -3.223 21.586 -0.773 21.839
hybrid contribution 0.180 -1.445 -0.937 1.731
sum -3.044 20.141 -1.710 20.441
Atomic orbital electron populations
1.22181 0.91976 1.02927 1.04071 1.23619 1.00099 1.00417 0.96937
1.21648 1.01942 0.91316 1.04115 1.85575 1.75113 0.95769 1.30064
1.22320 0.99359 0.98574 0.96404 1.21083 1.02619 0.96199 0.96472
1.20988 0.94786 0.91925 0.98291 1.19341 1.08832 0.89360 0.97590
1.21632 0.74517 0.88012 0.81548 1.90698 1.43267 1.84053 1.27028
1.86535 1.77096 1.18071 1.42285 1.22629 0.96538 0.75926 0.99242
1.19069 0.92853 0.92861 0.94653 1.20664 0.91157 1.48273 0.93238
0.92440 1.25607 1.02294 0.93558 0.95382 1.69957 1.29270 1.49367
1.05856 0.85686 0.79395 0.78835 0.78199 1.19551 1.21311 1.19485
1.23005 1.04544 0.93644 1.01172 1.22976 0.97698 1.04815 0.97115
1.21235 0.92812 0.96929 0.95479 1.20696 1.02228 0.91211 0.99934
0.92777 0.91286 0.89388 0.87984 0.91530 0.88683 0.91440 0.82174
0.84230 0.95646 0.89556 0.93227 0.90047 0.89571 0.89494 0.89770
0.84714 0.83040
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.76 8.85 71.98 0.64 -1.12 16
2 C -0.08 -1.02 2.59 30.60 0.08 -0.95 16
3 C -0.13 -1.15 9.20 71.98 0.66 -0.49 16
4 S -0.11 -2.09 21.29 -56.49 -1.20 -3.29 16
5 C -0.05 -1.29 6.07 22.79 0.14 -1.15 16
6 C -0.14 -3.34 8.08 22.14 0.18 -3.16 16
7 C -0.04 -1.22 9.54 22.29 0.21 -1.00 16
8 C -0.15 -5.51 5.88 -20.08 -0.12 -5.62 16
9 C 0.50 22.94 7.87 70.22 0.55 23.49 16
10 O -0.56 -27.51 16.05 19.79 0.32 -27.19 16
11 O -0.33 -16.47 8.99 -56.84 -0.51 -16.98 16
12 C 0.13 6.73 4.46 71.98 0.32 7.05 16
13 C 0.01 0.30 2.20 -52.92 -0.12 0.19 16
14 C -0.50 -26.92 8.78 25.60 0.22 -26.69 16
15 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16
16 C 0.03 1.70 5.34 84.65 0.45 2.15 16
17 N -0.91 -51.33 10.23 21.45 0.22 -51.11 16
18 Si 0.95 43.10 29.54 68.60 2.03 45.13 16
19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
20 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16
21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16
22 C -0.19 -8.14 9.96 30.62 0.30 -7.83 16
23 C -0.19 -8.03 9.92 30.62 0.30 -7.72 16
24 C -0.04 -1.50 9.56 22.29 0.21 -1.28 16
25 C -0.12 -3.21 9.73 22.14 0.22 -2.99 16
26 H 0.05 0.77 6.29 -2.39 -0.02 0.75 16
27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16
28 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16
29 H 0.10 1.19 6.68 -2.39 -0.02 1.18 16
30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16
31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16
32 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16
33 H 0.16 2.77 4.97 -2.91 -0.01 2.75 16
34 H 0.14 4.12 7.65 -2.91 -0.02 4.10 16
35 H 0.03 1.25 7.91 -2.39 -0.02 1.24 16
36 H 0.09 4.97 5.96 -2.39 -0.01 4.95 16
37 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16
38 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16
39 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16
40 H 0.09 3.53 8.14 -2.38 -0.02 3.51 16
41 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16
42 H 0.13 4.85 7.61 -2.91 -0.02 4.83 16
43 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16
Total: -1.00 -64.61 370.00 6.12 -58.49
By element:
Atomic # 1 Polarization: 21.09 SS G_CDS: 1.01 Total: 22.10 kcal
Atomic # 6 Polarization: -31.40 SS G_CDS: 4.26 Total: -27.14 kcal
Atomic # 7 Polarization: -51.33 SS G_CDS: 0.22 Total: -51.11 kcal
Atomic # 8 Polarization: -43.98 SS G_CDS: -0.19 Total: -44.17 kcal
Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal
Atomic # 16 Polarization: -2.09 SS G_CDS: -1.20 Total: -3.29 kcal
Total: -64.61 6.12 -58.49 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000744276357.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.554 kcal
(2) G-P(sol) polarization free energy of solvation -64.605 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.051 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.489 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.935 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds