Wall clock time and date at job start Tue Mar 31 2020 13:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46839 * 2 1 4 4 C 1.46494 * 119.99604 * 269.99529 * 3 2 1 5 5 C 1.50698 * 109.47440 * 270.00149 * 4 3 2 6 6 H 1.07996 * 120.00256 * 0.02562 * 5 4 3 7 7 C 1.37886 * 120.00270 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99576 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99914 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47533 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46714 * 120.00348 * 9 7 5 12 12 H 1.48505 * 109.47171 * 240.00100 * 9 7 5 13 13 C 1.34777 * 120.00032 * 89.99884 * 3 2 1 14 14 O 1.21276 * 119.99482 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00174 * 359.97438 * 13 3 2 16 16 O 1.42892 * 109.47164 * 179.97438 * 15 13 3 17 17 C 1.34930 * 117.00294 * 180.02562 * 16 15 13 18 18 O 1.21656 * 120.00117 * 359.97438 * 17 16 15 19 19 C 1.46303 * 120.00229 * 180.02562 * 17 16 15 20 20 C 1.37889 * 125.86851 * 179.97438 * 19 17 16 21 21 C 1.39865 * 107.68233 * 180.02562 * 20 19 17 22 22 O 1.35129 * 145.12919 * 180.02562 * 21 20 19 23 23 C 1.34375 * 109.62240 * 179.97438 * 22 21 20 24 24 C 1.34478 * 109.45397 * 0.24465 * 23 22 21 25 25 C 1.39178 * 107.42092 * 359.97438 * 21 20 19 26 26 N 1.37088 * 108.12929 * 359.97438 * 25 21 20 27 27 H 0.96993 * 125.74795 * 180.02562 * 26 25 21 28 28 H 1.08995 * 109.47166 * 60.00116 * 1 2 3 29 29 H 1.09002 * 109.46634 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46841 * 300.00335 * 1 2 3 31 31 H 1.08997 * 109.47551 * 239.99561 * 2 1 3 32 32 H 1.09000 * 109.47198 * 119.99387 * 2 1 3 33 33 H 1.09009 * 109.47566 * 30.00582 * 4 3 2 34 34 H 1.09005 * 109.47114 * 150.00067 * 4 3 2 35 35 H 0.96993 * 119.99649 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46822 * 60.00066 * 15 13 3 37 37 H 1.09000 * 109.46920 * 300.00202 * 15 13 3 38 38 H 1.08006 * 126.15746 * 359.97438 * 20 19 17 39 39 H 1.08002 * 125.26846 * 179.97438 * 23 22 21 40 40 H 1.08002 * 126.40964 * 179.71397 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0962 7 6 4.1491 2.3896 -2.8781 8 7 3.3490 3.1256 -3.6182 9 14 5.9136 2.0966 -3.4168 10 1 6.6013 1.2416 -2.4163 11 1 5.9215 1.4170 -4.7371 12 1 6.6205 3.3981 -3.5258 13 6 2.2429 2.0167 1.1672 14 8 2.6475 3.1599 1.1671 15 6 1.9912 1.3065 2.4723 16 8 2.3014 2.1818 3.5584 17 6 2.1296 1.6956 4.8053 18 8 1.7267 0.5588 4.9648 19 6 2.4268 2.5358 5.9655 20 6 2.2951 2.1646 7.2869 21 6 2.6800 3.2542 8.0747 22 8 2.8402 3.7076 9.3376 23 6 3.2881 4.9742 9.3089 24 6 3.4234 5.3726 8.0316 25 6 3.0448 4.2838 7.2122 26 7 2.8886 3.8378 5.9254 27 1 3.0708 4.3499 5.1221 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.5817 1.6877 -2.0285 34 1 2.0955 3.1411 -1.1385 35 1 3.6751 3.5160 -4.4441 36 1 2.6211 0.4188 2.5303 37 1 0.9431 1.0127 2.5298 38 1 1.9551 1.2053 7.6485 39 1 3.5018 5.5799 10.1771 40 1 3.7602 6.3419 7.6946 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786032866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:08 Heat of formation + Delta-G solvation = -73.921126 kcal Electronic energy + Delta-G solvation = -25906.482756 eV Core-core repulsion = 21881.953996 eV Total energy + Delta-G solvation = -4024.528759 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.98719 -41.98921 -40.75390 -40.01932 -37.81222 -37.00816 -34.95340 -33.41611 -31.86854 -31.72311 -30.95469 -29.63307 -28.31425 -25.50418 -24.68928 -24.04876 -22.68162 -21.85109 -21.63886 -20.34669 -19.58571 -18.69356 -18.66442 -18.14246 -17.99312 -17.57345 -17.24033 -16.98941 -16.60370 -16.27751 -16.01174 -15.15507 -14.91962 -14.82288 -14.73863 -14.56494 -14.39864 -13.95125 -13.90244 -13.70073 -13.61598 -13.30057 -13.08147 -12.86526 -12.70934 -12.52677 -12.25341 -12.12211 -12.08780 -11.81297 -11.70885 -11.16508 -10.76742 -10.66676 -9.74012 -9.56608 -9.03021 -8.25100 -6.39365 -0.34130 0.99832 1.00262 1.35903 1.37935 1.45076 1.49509 1.58410 1.61760 1.85657 1.99378 2.33577 2.46527 3.05202 3.37451 3.50762 3.63299 3.87513 3.89890 3.94585 4.14845 4.19649 4.37707 4.39623 4.58895 4.62527 4.70966 4.85301 4.94219 4.95179 5.01633 5.03882 5.18613 5.36127 5.37421 5.48038 5.52670 5.77642 6.02276 6.05826 6.22827 6.39297 6.59647 6.70144 7.18297 7.34389 8.82579 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.002662 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.027108 B =10514.251868 C =11599.287715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.500 3.500 14 O -0.578 6.578 15 C 0.062 3.938 16 O -0.343 6.343 17 C 0.544 3.456 18 O -0.504 6.504 19 C -0.007 4.007 20 C -0.059 4.059 21 C -0.074 4.074 22 O -0.179 6.179 23 C 0.045 3.955 24 C -0.225 4.225 25 C 0.021 3.979 26 N -0.520 5.520 27 H 0.434 0.566 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.000 1.000 35 H 0.268 0.732 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.178 0.822 39 H 0.265 0.735 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 -1.752 24.238 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.287 3.713 14 O -0.458 6.458 15 C -0.015 4.015 16 O -0.259 6.259 17 C 0.390 3.610 18 O -0.393 6.393 19 C -0.117 4.117 20 C -0.087 4.087 21 C -0.124 4.124 22 O -0.077 6.077 23 C -0.022 4.022 24 C -0.246 4.246 25 C -0.095 4.095 26 N -0.123 5.123 27 H 0.275 0.725 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.048 0.952 34 H 0.018 0.982 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.196 0.804 39 H 0.280 0.720 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.189 -1.564 24.129 24.389 hybrid contribution 0.880 0.498 -1.528 1.833 sum -2.309 -1.066 22.601 22.743 Atomic orbital electron populations 1.22179 0.94295 1.03832 1.01851 1.21889 0.95580 0.80918 1.04510 1.48201 1.63460 1.15288 1.05648 1.18802 0.95605 0.91684 0.79761 1.21722 0.97792 1.32092 1.06568 0.92753 1.25844 1.02353 0.94454 0.96418 1.70051 1.37679 1.34146 1.14827 0.85367 0.79024 0.77993 0.78417 1.19151 1.19412 1.20796 1.20498 0.78362 0.86624 0.85774 1.90668 1.47245 1.20136 1.87746 1.22535 1.05071 0.92234 0.81651 1.86165 1.79321 1.45689 1.14677 1.19670 0.74614 0.85012 0.81725 1.90912 1.43615 1.18466 1.86318 1.18845 1.15390 0.85843 0.91575 1.20023 1.03736 0.98374 0.86541 1.19255 1.13074 0.97440 0.82656 1.84056 1.69967 1.28533 1.25164 1.25173 0.95719 0.81534 0.99789 1.21068 1.12599 0.99832 0.91143 1.19714 1.06766 0.98342 0.84672 1.41289 1.52965 1.11154 1.06921 0.72543 0.93737 0.88358 0.92348 0.89988 0.88245 0.95211 0.98185 0.92351 0.86253 0.85807 0.80428 0.71970 0.80333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.17 16 2 C 0.09 2.72 5.93 86.38 0.51 3.24 16 3 N -0.59 -24.67 2.46 -826.14 -2.03 -26.70 16 4 C 0.26 13.92 5.16 85.63 0.44 14.36 16 5 C -0.54 -30.93 9.39 25.60 0.24 -30.69 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.48 5.46 84.66 0.46 0.94 16 8 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 9 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 C 0.50 20.89 7.75 87.66 0.68 21.57 16 14 O -0.58 -30.13 16.08 16.02 0.26 -29.87 16 15 C 0.06 1.88 4.41 71.24 0.31 2.19 16 16 O -0.34 -10.93 9.65 -52.00 -0.50 -11.43 16 17 C 0.54 15.37 7.91 69.92 0.55 15.93 16 18 O -0.50 -14.87 16.64 19.32 0.32 -14.55 16 19 C -0.01 -0.17 7.06 40.16 0.28 0.12 16 20 C -0.06 -1.35 10.58 22.58 0.24 -1.11 16 21 C -0.07 -1.65 8.19 22.89 0.19 -1.46 16 22 O -0.18 -3.28 10.68 -11.51 -0.12 -3.40 16 23 C 0.04 0.47 12.02 66.96 0.80 1.28 16 24 C -0.23 -3.22 10.89 22.19 0.24 -2.98 16 25 C 0.02 0.45 8.11 39.33 0.32 0.77 16 26 N -0.52 -12.23 6.19 -176.24 -1.09 -13.33 16 27 H 0.43 9.63 8.96 -92.71 -0.83 8.80 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 31 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 32 H 0.10 2.25 6.44 -2.39 -0.02 2.24 16 33 H 0.03 1.59 8.07 -2.38 -0.02 1.58 16 34 H 0.00 0.00 7.42 -2.38 -0.02 -0.02 16 35 H 0.27 14.99 8.31 -92.71 -0.77 14.21 16 36 H 0.12 3.09 7.39 -2.39 -0.02 3.07 16 37 H 0.12 3.06 7.17 -2.39 -0.02 3.05 16 38 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.26 -0.25 8.06 -2.91 -0.02 -0.28 16 40 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -79.54 356.26 5.42 -74.12 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.26 Total: 12.84 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 6.02 Total: 20.97 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -2.84 Total: -95.30 kcal Atomic # 8 Polarization: -59.21 SS G_CDS: -0.05 Total: -59.25 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -79.54 5.42 -74.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786032866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.198 kcal (2) G-P(sol) polarization free energy of solvation -79.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds