Wall clock time and date at job start Tue Mar 31 2020 13:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47237 * 2 1 4 4 C 1.50697 * 109.47109 * 239.99983 * 2 1 3 5 5 H 1.07999 * 120.00028 * 245.62169 * 4 2 1 6 6 C 1.37877 * 119.99883 * 65.61495 * 4 2 1 7 7 N 1.31512 * 119.99916 * 196.97349 * 6 4 2 8 8 Si 1.86798 * 120.00059 * 17.25803 * 6 4 2 9 9 H 1.48500 * 109.47180 * 179.71899 * 8 6 4 10 10 H 1.48497 * 109.47063 * 299.72121 * 8 6 4 11 11 H 1.48504 * 109.46829 * 59.72088 * 8 6 4 12 12 N 1.46501 * 109.47066 * 120.00088 * 2 1 3 13 13 C 1.46502 * 119.99990 * 59.99653 * 12 2 1 14 14 S 1.65606 * 119.99949 * 239.99956 * 12 2 1 15 15 O 1.42098 * 106.40018 * 203.54140 * 14 12 2 16 16 O 1.42101 * 106.40004 * 336.45806 * 14 12 2 17 17 N 1.65598 * 107.21806 * 89.99829 * 14 12 2 18 18 C 1.46509 * 119.99878 * 64.99978 * 17 14 12 19 19 C 1.50700 * 109.46688 * 164.99787 * 18 17 14 20 20 O 1.20816 * 120.00327 * 0.02562 * 19 18 17 21 21 O 1.34235 * 119.99172 * 180.02562 * 19 18 17 22 22 C 1.45202 * 116.99479 * 180.02562 * 21 19 18 23 23 C 1.52994 * 109.47238 * 179.97438 * 22 21 19 24 24 C 1.53001 * 117.50172 * 243.62443 * 23 22 21 25 25 C 1.52999 * 117.50087 * 174.99974 * 23 22 21 26 26 H 1.08995 * 109.46948 * 65.88885 * 1 2 3 27 27 H 1.09001 * 109.47142 * 185.89183 * 1 2 3 28 28 H 1.09007 * 109.46976 * 305.88510 * 1 2 3 29 29 H 0.97003 * 120.00480 * 355.09525 * 7 6 4 30 30 H 1.09001 * 109.46622 * 90.00156 * 13 12 2 31 31 H 1.08999 * 109.47047 * 209.99757 * 13 12 2 32 32 H 1.08998 * 109.47596 * 330.00148 * 13 12 2 33 33 H 0.96997 * 120.00015 * 245.00257 * 17 14 12 34 34 H 1.09001 * 109.47073 * 285.00005 * 18 17 14 35 35 H 1.09002 * 109.46675 * 44.99867 * 18 17 14 36 36 H 1.09003 * 109.47342 * 300.00326 * 22 21 19 37 37 H 1.09009 * 109.47281 * 59.99874 * 22 21 19 38 38 H 1.09006 * 115.55042 * 29.33318 * 23 22 21 39 39 H 1.08994 * 117.49626 * 359.97438 * 24 23 22 40 40 H 1.09001 * 117.49937 * 145.01967 * 24 23 22 41 41 H 1.08999 * 117.49894 * 214.98193 * 25 23 22 42 42 H 1.08994 * 117.49997 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1339 6 6 1.7973 -0.1757 -2.4794 7 7 1.9262 -0.9269 -3.5511 8 14 1.3036 1.6178 -2.6497 9 1 1.1175 1.9457 -4.0861 10 1 0.0321 1.8527 -1.9195 11 1 2.3689 2.4808 -2.0790 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9705 0.1142 2.2863 15 8 3.7119 -0.8789 2.9814 16 8 3.5795 1.1829 1.5748 17 7 1.9608 0.8091 3.3998 18 6 1.1509 -0.0353 4.2817 19 6 0.6169 0.7949 5.4204 20 8 0.8847 1.9711 5.4881 21 8 -0.1564 0.2275 6.3595 22 6 -0.6358 1.0876 7.4266 23 6 -1.4947 0.2702 8.3935 24 6 -2.9719 0.6485 8.5190 25 6 -2.0002 0.9720 9.6557 26 1 -0.3633 0.4198 -0.9380 27 1 -0.3633 -1.0222 0.1055 28 1 -0.3633 0.6024 0.8327 29 1 2.2550 -1.8359 -3.4697 30 1 2.4157 -2.7377 0.9717 31 1 1.6238 -2.2852 2.5002 32 1 0.6904 -2.3003 0.9847 33 1 1.9055 1.7750 3.4681 34 1 0.3188 -0.4567 3.7178 35 1 1.7670 -0.8424 4.6782 36 1 0.2143 1.5095 7.9629 37 1 -1.2342 1.8939 7.0024 38 1 -1.2367 -0.7858 8.4740 39 1 -3.3317 1.4799 7.9130 40 1 -3.6861 -0.1587 8.6819 41 1 -2.0750 0.3777 10.5663 42 1 -1.7211 2.0161 9.7969 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800908578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:11 Heat of formation + Delta-G solvation = -129.978217 kcal Electronic energy + Delta-G solvation = -25571.032381 eV Core-core repulsion = 21679.516755 eV Total energy + Delta-G solvation = -3891.515626 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83118 -38.11769 -36.90277 -36.57022 -36.43828 -35.43185 -34.83496 -32.59327 -29.88227 -29.10623 -26.89935 -25.85194 -24.64405 -22.89823 -21.55067 -21.23672 -20.77992 -19.25383 -18.04813 -17.62771 -17.57786 -17.21911 -16.89682 -16.41408 -16.17739 -15.33726 -14.88097 -14.59772 -14.37807 -14.09059 -13.69841 -13.33532 -13.23617 -13.08380 -12.98569 -12.17638 -12.17452 -12.05272 -11.89047 -11.83822 -11.79596 -11.67464 -11.58509 -11.41227 -11.31931 -11.15424 -10.88987 -10.72476 -10.47434 -10.40329 -10.02115 -9.81140 -9.67101 -9.18441 -8.44938 -8.11634 -6.49618 -4.13163 0.89393 1.85957 2.19383 3.22678 3.28636 3.34309 3.47987 3.59630 3.88245 4.05668 4.31170 4.35808 4.44709 4.61717 4.71587 4.73936 4.90142 4.94715 4.98733 5.07035 5.14529 5.18221 5.34120 5.38755 5.55033 5.60182 5.67076 5.92680 6.05350 6.15643 6.31053 6.32286 6.46859 6.53280 6.85768 6.97123 7.25818 7.38791 7.43678 7.92995 8.34345 8.86473 9.55361 10.89050 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019990 B = 0.003135 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.333002 B = 8929.505389 C = 9350.108652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.244 3.756 3 H 0.049 0.951 4 C -0.605 4.605 5 H 0.065 0.935 6 C 0.035 3.965 7 N -0.901 5.901 8 Si 1.034 2.966 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.275 1.275 12 N -0.983 5.983 13 C 0.107 3.893 14 S 2.781 3.219 15 O -0.988 6.988 16 O -0.964 6.964 17 N -1.128 6.128 18 C 0.131 3.869 19 C 0.465 3.535 20 O -0.499 6.499 21 O -0.351 6.351 22 C 0.098 3.902 23 C -0.160 4.160 24 C -0.176 4.176 25 C -0.169 4.169 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.025 0.975 29 H 0.268 0.732 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.423 0.577 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 1.338 23.244 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.139 3.861 3 H 0.066 0.934 4 C -0.644 4.644 5 H 0.083 0.917 6 C -0.171 4.171 7 N -0.535 5.535 8 Si 0.862 3.138 9 H -0.208 1.208 10 H -0.199 1.199 11 H -0.201 1.201 12 N -0.825 5.825 13 C -0.039 4.039 14 S 2.789 3.211 15 O -0.971 6.971 16 O -0.948 6.948 17 N -0.890 5.890 18 C 0.003 3.997 19 C 0.306 3.694 20 O -0.386 6.386 21 O -0.268 6.268 22 C 0.024 3.976 23 C -0.178 4.178 24 C -0.212 4.212 25 C -0.206 4.206 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.259 0.741 34 H 0.128 0.872 35 H 0.138 0.862 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.138 0.862 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.826 2.704 22.192 24.036 hybrid contribution -0.004 -0.723 1.211 1.410 sum -8.831 1.981 23.403 25.092 Atomic orbital electron populations 1.22561 0.98650 1.00680 1.00325 1.19027 0.90841 0.93177 0.83042 0.93354 1.22147 1.40962 1.10625 0.90647 0.91721 1.25689 0.94675 1.04854 0.91931 1.70861 1.41268 1.10061 1.31275 0.84221 0.77443 0.75687 0.76487 1.20837 1.19898 1.20109 1.57521 1.70107 1.19895 1.35001 1.21224 1.02107 0.81734 0.98827 1.02036 0.73468 0.73207 0.72344 1.93556 1.68642 1.60507 1.74393 1.93634 1.73688 1.56026 1.71471 1.56314 1.62196 1.18433 1.52022 1.20601 0.97491 0.92810 0.88810 1.23579 0.75617 0.87530 0.82659 1.90668 1.55689 1.17264 1.74998 1.86463 1.61668 1.43589 1.35036 1.22596 0.97746 0.91501 0.85733 1.22143 0.96101 1.01104 0.98461 1.23134 0.92248 1.03761 1.02103 1.23011 1.03325 1.01655 0.92649 0.91575 0.92885 0.95601 0.92132 0.92842 0.93056 0.90731 0.74119 0.87159 0.86174 0.90504 0.90789 0.86224 0.88427 0.88202 0.88008 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 8.96 37.16 0.33 -2.88 16 2 C 0.24 5.51 2.21 -69.08 -0.15 5.35 16 3 H 0.05 1.15 5.57 -51.93 -0.29 0.86 16 4 C -0.60 -16.29 8.68 -34.44 -0.30 -16.59 16 5 H 0.06 1.87 7.75 -52.49 -0.41 1.46 16 6 C 0.03 0.98 5.30 -17.82 -0.09 0.88 16 7 N -0.90 -26.91 13.70 55.43 0.76 -26.15 16 8 Si 1.03 24.62 26.29 -169.99 -4.47 20.15 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.27 -5.79 5.74 56.52 0.32 -5.47 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.98 -18.89 3.12 -115.85 -0.36 -19.25 16 13 C 0.11 1.74 9.48 59.85 0.57 2.31 16 14 S 2.78 51.20 6.09 -107.50 -0.66 50.54 16 15 O -0.99 -19.17 16.68 -57.17 -0.95 -20.12 16 16 O -0.96 -21.49 16.70 -57.17 -0.95 -22.45 16 17 N -1.13 -15.96 5.99 -11.65 -0.07 -16.02 16 18 C 0.13 1.45 6.84 -5.19 -0.04 1.42 16 19 C 0.46 5.42 8.03 36.01 0.29 5.71 16 20 O -0.50 -7.04 15.48 -18.74 -0.29 -7.33 16 21 O -0.35 -3.56 10.22 -39.27 -0.40 -3.96 16 22 C 0.10 0.83 5.75 37.15 0.21 1.04 16 23 C -0.16 -1.06 6.07 -90.62 -0.55 -1.61 16 24 C -0.18 -1.00 10.18 -26.73 -0.27 -1.27 16 25 C -0.17 -0.88 10.25 -26.73 -0.27 -1.15 16 26 H 0.07 1.39 4.85 -51.93 -0.25 1.13 16 27 H 0.05 0.98 6.45 -51.93 -0.33 0.64 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.27 7.98 8.73 -40.82 -0.36 7.62 16 30 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.05 0.64 7.79 -51.93 -0.40 0.23 16 32 H 0.07 1.15 6.33 -51.93 -0.33 0.82 16 33 H 0.42 5.85 7.71 -34.47 -0.27 5.59 16 34 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.12 1.16 7.75 -51.93 -0.40 0.76 16 36 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 37 H 0.07 0.62 7.87 -51.92 -0.41 0.21 16 38 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.54 8.03 -51.93 -0.42 0.13 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -34.30 359.83 -8.37 -42.67 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.12 Total: 3.29 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -0.27 Total: -6.80 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.33 Total: -61.43 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -2.60 Total: -53.85 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.47 Total: 20.15 kcal Atomic # 16 Polarization: 51.20 SS G_CDS: -0.66 Total: 50.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.30 -8.37 -42.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800908578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.309 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds