Wall clock time and date at job start Tue Mar 31 2020 13:29:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.39015 * 120.00051 * 2 1
4 4 C 1.39241 * 119.92541 * 2.23046 * 3 2 1
5 5 C 1.36576 * 120.20336 * 180.02562 * 4 3 2
6 6 C 1.39856 * 120.05180 * 0.02562 * 5 4 3
7 7 C 1.47378 * 120.07905 * 179.97438 * 6 5 4
8 8 O 1.21510 * 120.00389 * 179.97438 * 7 6 5
9 9 O 1.34767 * 119.99228 * 0.02562 * 7 6 5
10 10 C 1.45204 * 116.99324 * 182.99306 * 9 7 6
11 11 C 1.50697 * 112.85332 * 296.31704 * 10 9 7
12 12 H 1.07995 * 120.00488 * 118.95574 * 11 10 9
13 13 C 1.37886 * 119.99761 * 298.95650 * 11 10 9
14 14 N 1.31513 * 119.99633 * 1.83937 * 13 11 10
15 15 Si 1.86797 * 119.99773 * 181.83599 * 13 11 10
16 16 H 1.48503 * 109.46801 * 179.97438 * 15 13 11
17 17 H 1.48493 * 109.47501 * 300.00128 * 15 13 11
18 18 H 1.48502 * 109.46886 * 60.00446 * 15 13 11
19 19 C 1.53789 * 113.61278 * 67.51373 * 10 9 7
20 20 C 1.53955 * 87.01612 * 89.22992 * 19 10 9
21 21 C 1.53777 * 87.11639 * 25.36205 * 20 19 10
22 22 C 1.39866 * 119.84724 * 0.24535 * 6 5 4
23 23 C 1.37637 * 119.80024 * 359.45186 * 22 6 5
24 24 N 1.48019 * 120.02595 * 180.27467 * 23 22 6
25 25 O 1.21805 * 120.00309 * 141.24281 * 24 23 22
26 26 O 1.21796 * 119.99985 * 321.23649 * 24 23 22
27 27 H 1.09007 * 109.47164 * 59.99952 * 1 2 3
28 28 H 1.08992 * 109.47371 * 179.97438 * 1 2 3
29 29 H 1.09002 * 109.47390 * 300.00354 * 1 2 3
30 30 H 0.96993 * 119.99966 * 179.97438 * 2 1 3
31 31 H 1.08002 * 119.89679 * 0.02562 * 4 3 2
32 32 H 1.08003 * 119.97463 * 179.97438 * 5 4 3
33 33 H 0.96996 * 120.00236 * 358.10699 * 14 13 11
34 34 H 1.09000 * 113.60666 * 203.74414 * 19 10 9
35 35 H 1.08997 * 113.61454 * 334.64867 * 19 10 9
36 36 H 1.08999 * 113.53358 * 270.80275 * 20 19 10
37 37 H 1.09001 * 113.74468 * 139.94657 * 20 19 10
38 38 H 1.08996 * 113.61352 * 220.09498 * 21 20 19
39 39 H 1.08997 * 113.69003 * 89.19801 * 21 20 19
40 40 H 1.07998 * 120.09393 * 179.72485 * 22 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1601 1.2039 0.0000
4 6 1.4631 2.4084 0.0470
5 6 2.1402 3.5945 0.0467
6 6 3.5379 3.6030 -0.0014
7 6 4.2692 4.8826 -0.0023
8 8 5.4836 4.8884 -0.0436
9 8 3.5909 6.0462 0.0438
10 6 4.3724 7.2679 -0.0276
11 6 5.3034 7.4364 1.1454
12 1 6.3701 7.4899 0.9849
13 6 4.7934 7.5224 2.4236
14 7 3.4974 7.4210 2.6225
15 14 5.9434 7.7828 3.8724
16 1 5.1524 7.8405 5.1279
17 1 6.9091 6.6572 3.9465
18 1 6.6825 9.0584 3.6946
19 6 5.0521 7.4856 -1.3898
20 6 3.7698 8.2201 -1.8217
21 6 3.5325 8.5195 -0.3322
22 6 4.2400 2.3945 -0.0543
23 6 3.5516 1.2026 -0.0474
24 7 4.2898 -0.0794 -0.0972
25 8 3.9068 -1.0288 0.5628
26 8 5.2802 -0.1850 -0.7982
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3634 0.5139 0.8900
30 1 1.9499 -0.8400 0.0004
31 1 0.3837 2.4047 0.0837
32 1 1.5959 4.5266 0.0828
33 1 2.8978 7.3132 1.8677
34 1 5.9295 8.1306 -1.3417
35 1 5.2339 6.5622 -1.9397
36 1 3.0187 7.5630 -2.2602
37 1 3.9552 9.1108 -2.4221
38 1 2.4893 8.4295 -0.0296
39 1 3.9930 9.4475 0.0067
40 1 5.3192 2.3965 -0.0960
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000810855801.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:29:03
Heat of formation + Delta-G solvation = -34.546677 kcal
Electronic energy + Delta-G solvation = -27249.228838 eV
Core-core repulsion = 23226.407483 eV
Total energy + Delta-G solvation = -4022.821355 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.125 amu
Computer time = 1.41 seconds
Orbital eigenvalues (eV)
-42.27966 -40.15662 -39.28361 -37.37501 -36.63512 -35.73423 -34.38308 -32.47753
-32.18989 -30.45679 -27.09595 -26.51425 -25.92630 -24.82057 -23.63377 -22.68570
-22.32297 -20.84581 -19.25584 -18.77923 -18.49518 -18.11293 -17.39634 -17.20504
-16.57017 -15.87626 -15.45341 -15.03414 -14.82745 -14.59065 -14.47836 -13.98010
-13.79652 -13.66961 -13.05936 -12.96663 -12.63493 -12.42903 -12.35220 -11.78089
-11.63134 -11.50096 -11.18322 -11.07015 -10.90769 -10.73642 -10.54523 -10.45943
-10.25428 -10.17849 -10.07963 -9.72968 -9.63372 -9.13136 -8.53089 -8.24645
-8.08269 -6.45520 -4.23414 0.06913 0.74803 1.17417 1.37501 2.77353
2.86309 3.37775 3.41860 3.54427 3.60630 3.86684 4.16545 4.45623
4.62553 4.63367 4.89242 4.92233 4.96065 5.01822 5.22393 5.24582
5.39562 5.48019 5.49188 5.61654 5.72453 5.95707 6.06973 6.11430
6.23776 6.24965 6.28196 6.59529 6.60626 6.62943 6.78104 6.97664
7.01208 7.25865 7.55251 7.60820 8.04564 8.35048 8.74285 8.86771
9.52013 10.92667
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.014583 B = 0.003931 C = 0.003745
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1919.561200 B = 7121.943136 C = 7474.628289
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -0.729 5.729
3 C 0.294 3.706
4 C -0.208 4.208
5 C 0.029 3.971
6 C -0.159 4.159
7 C 0.513 3.487
8 O -0.493 6.493
9 O -0.350 6.350
10 C 0.212 3.788
11 C -0.593 4.593
12 H 0.060 0.940
13 C 0.032 3.968
14 N -0.891 5.891
15 Si 1.063 2.937
16 H -0.282 1.282
17 H -0.287 1.287
18 H -0.285 1.285
19 C -0.145 4.145
20 C -0.149 4.149
21 C -0.108 4.108
22 C 0.040 3.960
23 C -0.132 4.132
24 N 0.043 4.957
25 O -0.188 6.188
26 O -0.147 6.147
27 H 0.063 0.937
28 H 0.083 0.917
29 H 0.066 0.934
30 H 0.413 0.587
31 H 0.149 0.851
32 H 0.156 0.844
33 H 0.278 0.722
34 H 0.083 0.917
35 H 0.053 0.947
36 H 0.069 0.931
37 H 0.056 0.944
38 H 0.058 0.942
39 H 0.089 0.911
40 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.130 -10.412 -6.679 15.375
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.358 5.358
3 C 0.182 3.818
4 C -0.230 4.230
5 C 0.009 3.991
6 C -0.163 4.163
7 C 0.355 3.645
8 O -0.381 6.381
9 O -0.267 6.267
10 C 0.179 3.821
11 C -0.630 4.630
12 H 0.078 0.922
13 C -0.175 4.175
14 N -0.527 5.527
15 Si 0.891 3.109
16 H -0.207 1.207
17 H -0.213 1.213
18 H -0.211 1.211
19 C -0.183 4.183
20 C -0.186 4.186
21 C -0.146 4.146
22 C 0.021 3.979
23 C -0.220 4.220
24 N 0.560 4.440
25 O -0.395 6.395
26 O -0.368 6.368
27 H 0.081 0.919
28 H 0.102 0.898
29 H 0.085 0.915
30 H 0.252 0.748
31 H 0.167 0.833
32 H 0.174 0.826
33 H 0.090 0.910
34 H 0.101 0.899
35 H 0.072 0.928
36 H 0.088 0.912
37 H 0.075 0.925
38 H 0.077 0.923
39 H 0.107 0.893
40 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -9.356 -9.667 -4.980 14.345
hybrid contribution 0.472 -0.887 -1.596 1.886
sum -8.884 -10.553 -6.576 15.282
Atomic orbital electron populations
1.21797 0.78508 1.03630 1.02236 1.44977 1.07354 1.05853 1.77617
1.17603 0.87537 0.88421 0.88214 1.20424 1.00815 0.89291 1.12514
1.21420 0.93084 0.99021 0.85544 1.19226 0.93553 0.91539 1.12012
1.20135 0.85996 0.84100 0.74244 1.90786 1.14421 1.88202 1.44717
1.86411 1.43493 1.14692 1.82069 1.20930 0.88907 0.78581 0.93709
1.22046 0.94031 1.54800 0.92132 0.92206 1.25841 0.98543 0.92861
1.00301 1.70727 1.02938 1.43133 1.35864 0.83625 0.74872 0.76791
0.75607 1.20686 1.21296 1.21116 1.23367 0.96982 0.99599 0.98308
1.22991 0.98595 0.99726 0.97307 1.22959 0.99879 0.98172 0.93586
1.20744 1.01875 0.88024 0.87279 1.20182 0.90038 0.83945 1.27867
1.43408 1.00286 1.02298 0.98019 1.94423 1.71665 1.31275 1.42114
1.94563 1.15764 1.89556 1.36932 0.91853 0.89835 0.91541 0.74756
0.83297 0.82618 0.90987 0.89875 0.92844 0.91229 0.92540 0.92306
0.89251 0.82341
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.48 9.93 59.85 0.59 1.08 16
2 N -0.73 -7.12 5.74 -65.40 -0.38 -7.49 16
3 C 0.29 3.65 6.61 -83.86 -0.55 3.09 16
4 C -0.21 -2.35 9.23 -39.81 -0.37 -2.72 16
5 C 0.03 0.40 9.56 -39.58 -0.38 0.03 16
6 C -0.16 -2.80 5.88 -104.96 -0.62 -3.42 16
7 C 0.51 11.44 7.27 34.45 0.25 11.69 16
8 O -0.49 -12.38 14.54 -19.27 -0.28 -12.66 16
9 O -0.35 -8.08 8.23 -40.67 -0.33 -8.42 16
10 C 0.21 5.10 0.11 -90.95 -0.01 5.09 16
11 C -0.59 -16.24 7.25 -34.44 -0.25 -16.49 16
12 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16
13 C 0.03 0.90 5.40 -17.82 -0.10 0.80 16
14 N -0.89 -25.31 13.52 55.43 0.75 -24.56 16
15 Si 1.06 24.98 29.90 -169.99 -5.08 19.90 16
16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16
18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
19 C -0.14 -3.08 6.94 -25.82 -0.18 -3.26 16
20 C -0.15 -2.71 8.03 -25.83 -0.21 -2.92 16
21 C -0.11 -2.30 6.73 -25.92 -0.17 -2.47 16
22 C 0.04 0.67 9.22 -39.19 -0.36 0.31 16
23 C -0.13 -1.97 6.49 -79.80 -0.52 -2.48 16
24 N 0.04 0.67 4.29 34.04 0.15 0.81 16
25 O -0.19 -2.82 16.73 -29.46 -0.49 -3.31 16
26 O -0.15 -2.42 18.97 -29.46 -0.56 -2.98 16
27 H 0.06 0.32 8.02 -51.92 -0.42 -0.10 16
28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
29 H 0.07 0.36 7.84 -51.93 -0.41 -0.05 16
30 H 0.41 4.18 6.26 -40.82 -0.26 3.93 16
31 H 0.15 1.19 6.69 -52.49 -0.35 0.84 16
32 H 0.16 2.08 7.60 -52.48 -0.40 1.68 16
33 H 0.28 7.76 5.79 -40.82 -0.24 7.52 16
34 H 0.08 1.75 8.09 -51.93 -0.42 1.33 16
35 H 0.05 1.14 7.44 -51.93 -0.39 0.75 16
36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
38 H 0.06 1.23 7.84 -51.93 -0.41 0.82 16
39 H 0.09 1.92 8.09 -51.93 -0.42 1.50 16
40 H 0.16 2.72 7.62 -52.49 -0.40 2.32 16
LS Contribution 345.41 15.07 5.21 5.21
Total: -1.00 -32.17 345.41 -8.47 -40.64
By element:
Atomic # 1 Polarization: 9.14 SS G_CDS: -4.57 Total: 4.56 kcal
Atomic # 6 Polarization: -8.82 SS G_CDS: -2.87 Total: -11.69 kcal
Atomic # 7 Polarization: -31.77 SS G_CDS: 0.52 Total: -31.25 kcal
Atomic # 8 Polarization: -25.71 SS G_CDS: -1.67 Total: -27.37 kcal
Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -32.17 -8.47 -40.64 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000810855801.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.093 kcal
(2) G-P(sol) polarization free energy of solvation -32.174 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.081 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.547 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.41 seconds