Wall clock time and date at job start Tue Mar 31 2020 13:29:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.39015 * 120.00051 * 2 1
4 4 C 1.39241 * 119.92541 * 2.23046 * 3 2 1
5 5 C 1.36576 * 120.20336 * 180.02562 * 4 3 2
6 6 C 1.39856 * 120.05180 * 0.02562 * 5 4 3
7 7 C 1.47378 * 120.07905 * 179.97438 * 6 5 4
8 8 O 1.21510 * 120.00389 * 179.97438 * 7 6 5
9 9 O 1.34767 * 119.99228 * 0.02562 * 7 6 5
10 10 C 1.45204 * 116.99324 * 182.99306 * 9 7 6
11 11 C 1.50697 * 112.85332 * 296.31704 * 10 9 7
12 12 H 1.07995 * 120.00488 * 118.95574 * 11 10 9
13 13 C 1.37886 * 119.99761 * 298.95650 * 11 10 9
14 14 N 1.31513 * 119.99633 * 1.83937 * 13 11 10
15 15 Si 1.86797 * 119.99773 * 181.83599 * 13 11 10
16 16 H 1.48503 * 109.46801 * 179.97438 * 15 13 11
17 17 H 1.48493 * 109.47501 * 300.00128 * 15 13 11
18 18 H 1.48502 * 109.46886 * 60.00446 * 15 13 11
19 19 C 1.53789 * 113.61278 * 67.51373 * 10 9 7
20 20 C 1.53955 * 87.01612 * 89.22992 * 19 10 9
21 21 C 1.53777 * 87.11639 * 25.36205 * 20 19 10
22 22 C 1.39866 * 119.84724 * 0.24535 * 6 5 4
23 23 C 1.37637 * 119.80024 * 359.45186 * 22 6 5
24 24 N 1.48019 * 120.02595 * 180.27467 * 23 22 6
25 25 O 1.21805 * 120.00309 * 141.24281 * 24 23 22
26 26 O 1.21796 * 119.99985 * 321.23649 * 24 23 22
27 27 H 1.09007 * 109.47164 * 59.99952 * 1 2 3
28 28 H 1.08992 * 109.47371 * 179.97438 * 1 2 3
29 29 H 1.09002 * 109.47390 * 300.00354 * 1 2 3
30 30 H 0.96993 * 119.99966 * 179.97438 * 2 1 3
31 31 H 1.08002 * 119.89679 * 0.02562 * 4 3 2
32 32 H 1.08003 * 119.97463 * 179.97438 * 5 4 3
33 33 H 0.96996 * 120.00236 * 358.10699 * 14 13 11
34 34 H 1.09000 * 113.60666 * 203.74414 * 19 10 9
35 35 H 1.08997 * 113.61454 * 334.64867 * 19 10 9
36 36 H 1.08999 * 113.53358 * 270.80275 * 20 19 10
37 37 H 1.09001 * 113.74468 * 139.94657 * 20 19 10
38 38 H 1.08996 * 113.61352 * 220.09498 * 21 20 19
39 39 H 1.08997 * 113.69003 * 89.19801 * 21 20 19
40 40 H 1.07998 * 120.09393 * 179.72485 * 22 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1601 1.2039 0.0000
4 6 1.4631 2.4084 0.0470
5 6 2.1402 3.5945 0.0467
6 6 3.5379 3.6030 -0.0014
7 6 4.2692 4.8826 -0.0023
8 8 5.4836 4.8884 -0.0436
9 8 3.5909 6.0462 0.0438
10 6 4.3724 7.2679 -0.0276
11 6 5.3034 7.4364 1.1454
12 1 6.3701 7.4899 0.9849
13 6 4.7934 7.5224 2.4236
14 7 3.4974 7.4210 2.6225
15 14 5.9434 7.7828 3.8724
16 1 5.1524 7.8405 5.1279
17 1 6.9091 6.6572 3.9465
18 1 6.6825 9.0584 3.6946
19 6 5.0521 7.4856 -1.3898
20 6 3.7698 8.2201 -1.8217
21 6 3.5325 8.5195 -0.3322
22 6 4.2400 2.3945 -0.0543
23 6 3.5516 1.2026 -0.0474
24 7 4.2898 -0.0794 -0.0972
25 8 3.9068 -1.0288 0.5628
26 8 5.2802 -0.1850 -0.7982
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3634 0.5139 0.8900
30 1 1.9499 -0.8400 0.0004
31 1 0.3837 2.4047 0.0837
32 1 1.5959 4.5266 0.0828
33 1 2.8978 7.3132 1.8677
34 1 5.9295 8.1306 -1.3417
35 1 5.2339 6.5622 -1.9397
36 1 3.0187 7.5630 -2.2602
37 1 3.9552 9.1108 -2.4221
38 1 2.4893 8.4295 -0.0296
39 1 3.9930 9.4475 0.0067
40 1 5.3192 2.3965 -0.0960
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000810855801.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:29:01
Heat of formation + Delta-G solvation = -52.795027 kcal
Electronic energy + Delta-G solvation = -27250.020146 eV
Core-core repulsion = 23226.407483 eV
Total energy + Delta-G solvation = -4023.612663 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.125 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-43.48600 -41.64066 -40.66650 -38.96330 -37.89221 -36.78945 -36.15172 -34.52345
-33.33582 -31.53632 -28.17840 -27.92238 -27.41225 -26.51834 -25.06620 -24.12979
-23.58905 -22.21442 -20.67223 -20.15384 -19.98195 -19.49118 -19.00380 -18.33233
-17.92748 -17.25696 -16.92434 -16.72652 -15.91802 -15.74214 -15.60904 -15.56864
-15.38484 -15.21135 -14.46497 -14.29578 -13.93581 -13.86162 -13.24536 -13.18466
-13.06017 -12.83434 -12.76186 -12.43045 -12.40903 -12.32143 -12.21956 -12.05596
-11.94053 -11.82901 -11.58904 -11.38124 -10.94296 -10.84177 -10.56785 -10.16003
-9.07858 -8.60192 -6.38138 -1.11593 -0.48347 0.01836 0.19626 1.47721
1.50964 1.52818 1.73800 1.87078 1.98736 2.41332 2.51008 3.09377
3.16840 3.51611 3.68026 3.72433 3.72686 3.83034 3.96097 4.11689
4.22065 4.27713 4.38250 4.52753 4.59027 4.74334 4.78017 4.88084
4.90378 4.96184 4.99878 5.02053 5.09569 5.17447 5.37391 5.55240
5.67146 5.70445 6.09526 6.10769 6.20775 6.37767 6.63193 7.08009
7.41931 8.78810
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.014583 B = 0.003931 C = 0.003745
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1919.561200 B = 7121.943136 C = 7474.628289
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.068 3.932
2 N -0.715 5.715
3 C 0.308 3.692
4 C -0.184 4.184
5 C 0.033 3.967
6 C -0.188 4.188
7 C 0.505 3.495
8 O -0.538 6.538
9 O -0.348 6.348
10 C 0.187 3.813
11 C -0.609 4.609
12 H 0.034 0.966
13 C -0.007 4.007
14 N -0.910 5.910
15 Si 1.098 2.902
16 H -0.276 1.276
17 H -0.291 1.291
18 H -0.265 1.265
19 C -0.147 4.147
20 C -0.120 4.120
21 C -0.105 4.105
22 C 0.036 3.964
23 C -0.147 4.147
24 N 0.046 4.954
25 O -0.162 6.162
26 O -0.193 6.193
27 H 0.081 0.919
28 H 0.107 0.893
29 H 0.081 0.919
30 H 0.412 0.588
31 H 0.196 0.804
32 H 0.165 0.835
33 H 0.274 0.726
34 H 0.077 0.923
35 H 0.044 0.956
36 H 0.086 0.914
37 H 0.088 0.912
38 H 0.060 0.940
39 H 0.081 0.919
40 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.492 -11.418 -6.970 18.302
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 N -0.340 5.340
3 C 0.192 3.808
4 C -0.206 4.206
5 C 0.013 3.987
6 C -0.192 4.192
7 C 0.351 3.649
8 O -0.430 6.430
9 O -0.264 6.264
10 C 0.153 3.847
11 C -0.646 4.646
12 H 0.052 0.948
13 C -0.210 4.210
14 N -0.546 5.546
15 Si 0.922 3.078
16 H -0.201 1.201
17 H -0.218 1.218
18 H -0.190 1.190
19 C -0.185 4.185
20 C -0.157 4.157
21 C -0.143 4.143
22 C 0.016 3.984
23 C -0.236 4.236
24 N 0.560 4.440
25 O -0.377 6.377
26 O -0.402 6.402
27 H 0.099 0.901
28 H 0.126 0.874
29 H 0.099 0.901
30 H 0.251 0.749
31 H 0.213 0.787
32 H 0.182 0.818
33 H 0.085 0.915
34 H 0.096 0.904
35 H 0.063 0.937
36 H 0.105 0.895
37 H 0.107 0.893
38 H 0.078 0.922
39 H 0.100 0.900
40 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -12.691 -10.675 -5.353 17.426
hybrid contribution 1.368 -0.806 -1.483 2.173
sum -11.323 -11.481 -6.836 17.514
Atomic orbital electron populations
1.22236 0.75472 1.05957 1.03728 1.45340 1.09276 1.04754 1.74618
1.17793 0.86494 0.89999 0.86520 1.20789 1.02620 0.87331 1.09840
1.21500 0.91272 1.00703 0.85220 1.18910 0.95011 0.89164 1.16122
1.20963 0.85957 0.85212 0.72797 1.90748 1.16363 1.88778 1.47064
1.86368 1.42951 1.14878 1.82252 1.21158 0.90024 0.79760 0.93736
1.22235 0.93442 1.55028 0.93939 0.94810 1.26869 0.99232 0.92436
1.02484 1.70802 1.03240 1.44896 1.35649 0.83168 0.73668 0.77384
0.73612 1.20053 1.21814 1.19015 1.23339 0.98376 0.99667 0.97118
1.22864 0.96516 1.00577 0.95707 1.22886 0.99206 0.96347 0.95861
1.20513 1.01055 0.88807 0.88027 1.20184 0.91079 0.82862 1.29488
1.43496 1.00192 1.02543 0.97797 1.94382 1.70999 1.31429 1.40893
1.94580 1.17018 1.90005 1.38626 0.90057 0.87425 0.90094 0.74871
0.78656 0.81787 0.91515 0.90444 0.93713 0.89524 0.89340 0.92164
0.90004 0.84512
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.41 9.93 127.77 1.27 1.68 16
2 N -0.71 -10.94 5.74 -360.82 -2.07 -13.01 16
3 C 0.31 6.70 6.61 38.48 0.25 6.95 16
4 C -0.18 -3.44 9.23 22.12 0.20 -3.24 16
5 C 0.03 0.86 9.56 22.27 0.21 1.08 16
6 C -0.19 -6.76 5.88 -20.09 -0.12 -6.87 16
7 C 0.50 23.55 7.27 70.23 0.51 24.06 16
8 O -0.54 -28.89 14.54 19.80 0.29 -28.61 16
9 O -0.35 -16.46 8.23 -56.78 -0.47 -16.92 16
10 C 0.19 9.21 0.11 -11.01 0.00 9.21 16
11 C -0.61 -34.64 7.25 25.60 0.19 -34.45 16
12 H 0.03 2.03 7.81 -2.91 -0.02 2.01 16
13 C -0.01 -0.38 5.40 84.66 0.46 0.07 16
14 N -0.91 -52.33 13.52 21.45 0.29 -52.04 16
15 Si 1.10 51.34 29.90 68.60 2.05 53.39 16
16 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16
17 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16
18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16
19 C -0.15 -6.36 6.94 31.18 0.22 -6.14 16
20 C -0.12 -4.14 8.03 31.18 0.25 -3.89 16
21 C -0.11 -4.43 6.73 31.12 0.21 -4.22 16
22 C 0.04 1.24 9.22 22.52 0.21 1.45 16
23 C -0.15 -4.30 6.49 36.47 0.24 -4.06 16
24 N 0.05 1.40 4.29 -46.23 -0.20 1.21 16
25 O -0.16 -4.61 16.73 18.88 0.32 -4.29 16
26 O -0.19 -6.61 18.97 18.89 0.36 -6.25 16
27 H 0.08 0.31 8.02 -2.38 -0.02 0.29 16
28 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16
29 H 0.08 0.37 7.84 -2.39 -0.02 0.35 16
30 H 0.41 6.83 6.26 -92.71 -0.58 6.25 16
31 H 0.20 1.87 6.69 -2.91 -0.02 1.85 16
32 H 0.16 4.06 7.60 -2.91 -0.02 4.03 16
33 H 0.27 15.47 5.79 -92.71 -0.54 14.93 16
34 H 0.08 3.36 8.09 -2.39 -0.02 3.34 16
35 H 0.04 1.97 7.44 -2.39 -0.02 1.95 16
36 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16
37 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16
38 H 0.06 2.48 7.84 -2.39 -0.02 2.46 16
39 H 0.08 3.51 8.09 -2.39 -0.02 3.50 16
40 H 0.14 5.20 7.62 -2.91 -0.02 5.17 16
Total: -1.00 -74.30 345.41 5.41 -68.89
By element:
Atomic # 1 Polarization: 15.28 SS G_CDS: 0.75 Total: 16.02 kcal
Atomic # 6 Polarization: -22.48 SS G_CDS: 4.10 Total: -18.38 kcal
Atomic # 7 Polarization: -61.87 SS G_CDS: -1.98 Total: -63.85 kcal
Atomic # 8 Polarization: -56.57 SS G_CDS: 0.49 Total: -56.08 kcal
Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal
Total: -74.30 5.41 -68.89 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000810855801.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.098 kcal
(2) G-P(sol) polarization free energy of solvation -74.299 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.201 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.893 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds