Wall clock time and date at job start Tue Mar 31 2020 13:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34062 * 125.14895 * 2 1 4 4 C 1.38112 * 107.87964 * 179.97438 * 3 2 1 5 5 C 1.47085 * 126.83002 * 179.97438 * 4 3 2 6 6 O 1.21541 * 120.00150 * 180.02562 * 5 4 3 7 7 O 1.34782 * 119.99649 * 0.03052 * 5 4 3 8 8 C 1.45206 * 116.99568 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46758 * 180.02562 * 8 7 5 10 10 O 1.42897 * 109.47634 * 64.99616 * 9 8 7 11 11 C 1.42897 * 114.00230 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47401 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99793 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00228 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00044 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 120.00023 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46950 * 90.00259 * 16 14 12 18 18 H 1.48501 * 109.47643 * 210.00299 * 16 14 12 19 19 H 1.48503 * 109.47379 * 330.00708 * 16 14 12 20 20 C 1.46639 * 106.34129 * 0.02562 * 4 3 2 21 21 C 1.48317 * 126.51486 * 179.97438 * 20 4 3 22 22 C 1.46746 * 127.11651 * 144.99957 * 21 20 4 23 23 C 1.34360 * 106.02275 * 180.02562 * 22 21 20 24 24 O 1.34158 * 109.00383 * 359.97438 * 23 22 21 25 25 C 1.34086 * 110.75467 * 0.02562 * 24 23 22 26 26 N 1.31346 * 106.96231 * 0.23625 * 20 4 3 27 27 H 1.08998 * 109.47306 * 89.99561 * 1 2 3 28 28 H 1.08998 * 109.46804 * 210.00252 * 1 2 3 29 29 H 1.09002 * 109.46671 * 330.00050 * 1 2 3 30 30 H 1.08004 * 126.06143 * 0.03383 * 3 2 1 31 31 H 1.09002 * 109.46823 * 299.99469 * 8 7 5 32 32 H 1.08992 * 109.47511 * 59.99945 * 8 7 5 33 33 H 1.09009 * 109.46850 * 184.99877 * 9 8 7 34 34 H 1.09004 * 109.47128 * 304.99271 * 9 8 7 35 35 H 1.08992 * 109.47598 * 300.00505 * 11 10 9 36 36 H 1.09003 * 109.46940 * 60.00320 * 11 10 9 37 37 H 0.96999 * 120.00353 * 179.97438 * 15 14 12 38 38 H 1.08002 * 126.98801 * 359.76920 * 22 21 20 39 39 H 1.08000 * 125.49731 * 179.97438 * 23 22 21 40 40 H 1.08004 * 125.77043 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2368 1.0962 0.0000 4 6 3.5557 0.6862 0.0006 5 6 4.7471 1.5487 0.0003 6 8 5.8566 1.0524 0.0004 7 8 4.6085 2.8893 -0.0001 8 6 5.8277 3.6780 0.0002 9 6 5.4722 5.1662 0.0004 10 8 4.8076 5.4971 1.2214 11 6 4.4308 6.8717 1.3240 12 6 3.7411 7.1064 2.6432 13 1 3.6046 6.2879 3.3343 14 6 3.2845 8.3662 2.9678 15 7 2.6831 8.5712 4.1193 16 14 3.5212 9.7822 1.7728 17 1 2.3503 9.8631 0.8630 18 1 3.6484 11.0532 2.5301 19 1 4.7531 9.5560 0.9750 20 6 3.5319 -0.7800 0.0003 21 6 4.7095 -1.6817 0.0002 22 6 4.8298 -2.9813 0.6712 23 6 6.0661 -3.4286 0.3943 24 8 6.6949 -2.5269 -0.3747 25 6 5.9000 -1.4755 -0.6208 26 7 2.2696 -1.1428 -0.0055 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.8889 2.1187 0.0005 31 1 6.4114 3.4442 0.8905 32 1 6.4122 3.4438 -0.8894 33 1 6.3837 5.7574 -0.0889 34 1 4.8147 5.3828 -0.8415 35 1 5.3207 7.4980 1.2623 36 1 3.7517 7.1241 0.5095 37 1 2.3621 9.4575 4.3479 38 1 4.0788 -3.4755 1.2697 39 1 6.4859 -4.3633 0.7357 40 1 6.1619 -0.6108 -1.2126 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815241266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:04 Heat of formation + Delta-G solvation = -57.700977 kcal Electronic energy + Delta-G solvation = -25727.894128 eV Core-core repulsion = 21704.068728 eV Total energy + Delta-G solvation = -4023.825401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.31504 -42.21051 -40.96142 -38.74055 -37.29014 -35.14719 -34.87340 -33.13998 -32.24248 -31.31977 -30.64391 -29.52598 -27.83105 -25.17294 -24.00282 -23.50109 -23.13218 -22.43458 -21.48442 -20.47500 -19.14321 -18.95563 -18.61763 -17.84590 -17.70554 -17.05497 -16.86961 -16.78024 -16.52831 -16.28750 -16.23980 -15.72809 -15.00044 -14.83315 -14.57341 -14.27181 -14.11113 -13.90765 -13.76091 -13.65216 -13.45510 -13.26096 -13.11203 -12.95932 -12.61944 -12.26048 -12.15073 -11.83437 -11.65471 -11.61245 -11.32006 -11.23201 -10.91421 -10.37199 -10.32548 -9.88689 -9.34573 -8.35564 -6.43887 0.19798 0.38914 1.08107 1.22755 1.35998 1.39346 1.50116 1.66868 1.77463 2.12070 2.23985 2.31471 2.97184 3.00203 3.18489 3.39083 3.89998 3.96035 4.00664 4.04238 4.12770 4.19398 4.34731 4.41350 4.44976 4.50590 4.54732 4.56616 4.64567 4.69232 4.78118 4.88997 5.03039 5.11705 5.21984 5.44793 5.45494 5.46485 5.73991 5.93608 6.14669 6.36333 6.60287 6.73230 6.82406 7.20562 8.81686 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.002710 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.740185 B =10330.166120 C =11425.119235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.357 5.357 3 C 0.154 3.846 4 C -0.314 4.314 5 C 0.545 3.455 6 O -0.537 6.537 7 O -0.353 6.353 8 C 0.077 3.923 9 C 0.051 3.949 10 O -0.407 6.407 11 C 0.178 3.822 12 C -0.547 4.547 13 H 0.027 0.973 14 C 0.011 3.989 15 N -0.944 5.944 16 Si 0.957 3.043 17 H -0.257 1.257 18 H -0.277 1.277 19 H -0.241 1.241 20 C 0.199 3.801 21 C -0.166 4.166 22 C -0.209 4.209 23 C -0.030 4.030 24 O -0.187 6.187 25 C 0.037 3.963 26 N -0.305 5.305 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.222 0.778 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.273 0.727 38 H 0.161 0.839 39 H 0.248 0.752 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.371 -20.107 -14.874 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.134 5.134 3 C 0.001 3.999 4 C -0.327 4.327 5 C 0.393 3.607 6 O -0.429 6.429 7 O -0.269 6.269 8 C 0.004 3.996 9 C -0.026 4.026 10 O -0.327 6.327 11 C 0.103 3.897 12 C -0.584 4.584 13 H 0.045 0.955 14 C -0.186 4.186 15 N -0.584 5.584 16 Si 0.778 3.222 17 H -0.182 1.182 18 H -0.202 1.202 19 H -0.165 1.165 20 C 0.031 3.969 21 C -0.170 4.170 22 C -0.228 4.228 23 C -0.095 4.095 24 O -0.082 6.082 25 C -0.033 4.033 26 N -0.125 5.125 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.138 0.862 30 H 0.239 0.761 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.179 0.821 39 H 0.264 0.736 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.178 -21.248 -14.714 25.846 hybrid contribution 0.234 1.586 0.242 1.621 sum 0.056 -19.662 -14.472 24.414 Atomic orbital electron populations 1.22516 0.70252 1.06886 1.05872 1.48609 1.08923 1.02520 1.53343 1.23646 0.89518 0.95051 0.91635 1.20417 0.91927 0.91581 1.28788 1.20012 0.88096 0.80882 0.71743 1.90717 1.27633 1.75472 1.49117 1.86610 1.38292 1.18091 1.83946 1.23232 0.84316 0.88319 1.03782 1.22765 0.98435 0.93142 0.88216 1.87929 1.77917 1.28410 1.38437 1.20354 0.94172 0.79709 0.95467 1.21178 1.38547 0.95882 1.02821 0.95469 1.25876 0.93609 1.01631 0.97523 1.70040 1.39985 1.24074 1.24257 0.85582 0.80626 0.77191 0.78777 1.18197 1.20197 1.16472 1.20987 0.90830 0.89451 0.95621 1.19215 0.93002 0.96879 1.07879 1.22985 0.99410 0.94895 1.05553 1.24658 0.92274 0.96071 0.96522 1.83938 1.42039 1.26288 1.55945 1.24500 0.88131 0.90271 1.00432 1.77326 1.01000 1.07901 1.26294 0.88046 0.88132 0.86204 0.76116 0.91646 0.86891 0.89218 0.91281 0.96557 0.96518 0.91831 0.82128 0.73633 0.76866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 11.39 127.77 1.46 2.29 16 2 N -0.36 -7.43 3.95 -367.87 -1.45 -8.88 16 3 C 0.15 3.47 11.28 84.32 0.95 4.42 16 4 C -0.31 -9.07 6.31 -18.79 -0.12 -9.19 16 5 C 0.55 17.19 7.95 70.14 0.56 17.75 16 6 O -0.54 -17.81 12.80 19.70 0.25 -17.55 16 7 O -0.35 -11.28 10.04 -54.27 -0.54 -11.83 16 8 C 0.08 2.22 5.86 71.98 0.42 2.64 16 9 C 0.05 1.59 6.33 71.98 0.46 2.04 16 10 O -0.41 -18.43 10.30 -145.57 -1.50 -19.93 16 11 C 0.18 8.63 4.76 71.24 0.34 8.97 16 12 C -0.55 -32.84 9.99 25.60 0.26 -32.58 16 13 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 14 C 0.01 0.66 5.47 84.65 0.46 1.12 16 15 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 16 Si 0.96 42.03 27.47 68.60 1.88 43.91 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.24 -9.60 6.54 99.48 0.65 -8.94 16 20 C 0.20 5.83 7.34 44.10 0.32 6.15 16 21 C -0.17 -4.64 6.08 -18.93 -0.11 -4.75 16 22 C -0.21 -4.71 11.15 23.61 0.26 -4.45 16 23 C -0.03 -0.54 12.04 66.93 0.81 0.27 16 24 O -0.19 -4.30 10.55 0.99 0.01 -4.29 16 25 C 0.04 0.97 10.29 67.26 0.69 1.66 16 26 N -0.30 -8.23 12.50 -44.49 -0.56 -8.78 16 27 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.12 0.70 8.13 -2.39 -0.02 0.68 16 30 H 0.22 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 36 H 0.02 0.76 7.57 -2.39 -0.02 0.75 16 37 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 39 H 0.25 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.22 5.40 6.32 -2.91 -0.02 5.39 16 Total: -1.00 -82.53 357.14 6.15 -76.38 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.01 Total: 13.20 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 6.75 Total: -3.66 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -1.71 Total: -76.23 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -1.78 Total: -53.60 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.88 Total: 43.91 kcal Total: -82.53 6.15 -76.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815241266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.677 kcal (2) G-P(sol) polarization free energy of solvation -82.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds