Wall clock time and date at job start Tue Mar 31 2020 13:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21310 * 120.00135 * 2 1 4 4 C 1.46653 * 119.99950 * 179.97438 * 2 1 3 5 5 C 1.40062 * 120.24154 * 3.48834 * 4 2 1 6 6 C 1.37627 * 119.89801 * 180.29934 * 5 4 2 7 7 N 1.48018 * 119.80109 * 179.70083 * 6 5 4 8 8 O 1.21801 * 120.00117 * 179.97438 * 7 6 5 9 9 O 1.21802 * 120.00269 * 359.97438 * 7 6 5 10 10 C 1.38701 * 120.39343 * 359.67521 * 6 5 4 11 11 C 1.37937 * 120.49271 * 0.02562 * 10 6 5 12 12 C 1.38956 * 120.08751 * 0.02562 * 11 10 6 13 13 N 1.38703 * 120.19531 * 180.02562 * 12 11 10 14 14 C 1.48537 * 110.99662 * 306.71064 * 13 12 11 15 15 C 1.54940 * 103.22499 * 159.72181 * 14 13 12 16 16 C 1.54591 * 102.92034 * 322.58561 * 15 14 13 17 17 O 1.42899 * 110.30892 * 263.04250 * 16 15 14 18 18 C 1.50699 * 110.39010 * 140.91960 * 16 15 14 19 19 H 1.07995 * 120.00198 * 5.74401 * 18 16 15 20 20 C 1.37877 * 119.99825 * 185.74699 * 18 16 15 21 21 N 1.31512 * 120.00453 * 175.96049 * 20 18 16 22 22 Si 1.86808 * 120.00075 * 355.96359 * 20 18 16 23 23 H 1.48500 * 109.47379 * 84.82251 * 22 20 18 24 24 H 1.48500 * 109.47046 * 204.82310 * 22 20 18 25 25 H 1.48497 * 109.46662 * 324.81910 * 22 20 18 26 26 C 1.47894 * 111.00256 * 64.10347 * 13 12 11 27 27 H 1.09001 * 109.47013 * 270.00346 * 1 2 3 28 28 H 1.08999 * 109.46710 * 29.99899 * 1 2 3 29 29 H 1.08998 * 109.47053 * 149.99853 * 1 2 3 30 30 H 1.07998 * 120.05144 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.74962 * 180.02562 * 10 6 5 32 32 H 1.07998 * 119.95194 * 180.02562 * 11 10 6 33 33 H 1.09004 * 110.66475 * 278.15416 * 14 13 12 34 34 H 1.09000 * 110.67073 * 41.28353 * 14 13 12 35 35 H 1.08995 * 110.71908 * 204.22724 * 15 14 13 36 36 H 1.09004 * 110.87452 * 81.01691 * 15 14 13 37 37 H 0.96705 * 114.00012 * 295.71695 * 17 16 15 38 38 H 0.96996 * 120.00733 * 180.02562 * 21 20 18 39 39 H 1.09006 * 109.91979 * 333.51589 * 26 13 12 40 40 H 1.09004 * 109.91418 * 94.80072 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2701 0.0006 5 6 1.5470 -2.4849 -0.0725 6 6 2.2419 -3.6728 -0.0653 7 7 1.5068 -4.9556 -0.1359 8 8 2.1181 -6.0090 -0.1302 9 8 0.2904 -4.9577 -0.1997 10 6 3.6270 -3.6751 0.0073 11 6 4.3264 -2.4881 0.0737 12 6 3.6452 -1.2769 0.0688 13 7 4.3463 -0.0819 0.1349 14 6 5.2719 -0.0715 1.2965 15 6 6.2975 1.0281 0.9226 16 6 6.4698 0.8362 -0.6016 17 8 7.6271 0.0434 -0.8740 18 6 6.5782 2.1723 -1.2901 19 1 6.6243 3.0790 -0.7052 20 6 6.6186 2.2372 -2.6667 21 7 6.6330 3.4057 -3.2699 22 14 6.6528 0.6651 -3.6753 23 1 5.2651 0.1764 -3.8774 24 1 7.2789 0.9367 -4.9942 25 1 7.4415 -0.3672 -2.9561 26 6 5.1976 0.1000 -1.0607 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 0.4685 -2.4896 -0.1292 31 1 4.1619 -4.6134 0.0119 32 1 5.4049 -2.5000 0.1295 33 1 4.7397 0.1934 2.2101 34 1 5.7655 -1.0374 1.4039 35 1 7.2425 0.8664 1.4411 36 1 5.9022 2.0194 1.1444 37 1 8.4592 0.4570 -0.6058 38 1 6.6611 3.4514 -4.2384 39 1 5.4613 -0.8710 -1.4801 40 1 4.6705 0.6977 -1.8043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826623743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:07 Heat of formation + Delta-G solvation = -47.526476 kcal Electronic energy + Delta-G solvation = -27671.476092 eV Core-core repulsion = 23648.091891 eV Total energy + Delta-G solvation = -4023.384201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.34559 -41.97691 -40.14226 -39.19743 -37.72888 -36.92079 -34.54923 -33.50723 -33.23283 -30.90303 -30.24555 -30.12878 -27.36943 -26.16306 -25.27523 -24.03105 -22.27114 -21.62126 -21.49469 -19.92250 -19.60549 -19.22424 -18.67294 -18.43929 -17.48509 -17.03307 -16.80598 -16.40450 -16.15222 -15.97656 -15.52743 -15.42691 -15.04512 -14.91165 -14.55572 -14.28265 -14.00017 -13.74242 -13.46022 -13.35629 -13.10223 -13.01348 -12.92992 -12.73761 -12.68159 -12.41062 -12.31844 -12.30635 -12.08971 -11.96684 -11.12817 -10.86038 -10.84719 -10.59363 -10.48795 -10.25377 -9.60385 -8.40528 -6.52413 -1.39333 -0.68953 0.06180 0.22239 1.23288 1.25582 1.33771 1.56432 2.14486 2.30313 2.51984 2.84217 2.94839 3.18462 3.41071 3.44506 3.63042 3.72589 3.88891 3.99950 4.08561 4.12741 4.19456 4.27513 4.30118 4.41688 4.57723 4.61586 4.66981 4.76912 4.83282 4.87850 4.94520 5.15063 5.20445 5.23475 5.25093 5.49994 5.61471 6.05694 6.06944 6.45043 6.58520 6.62813 7.12358 7.27668 8.74443 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015160 B = 0.004490 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.463042 B = 6234.908182 C = 6719.326193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.378 3.622 3 O -0.449 6.449 4 C -0.164 4.164 5 C 0.012 3.988 6 C -0.073 4.073 7 N 0.035 4.965 8 O -0.179 6.179 9 O -0.160 6.160 10 C -0.008 4.008 11 C -0.163 4.163 12 C 0.181 3.819 13 N -0.487 5.487 14 C 0.046 3.954 15 C -0.128 4.128 16 C 0.215 3.785 17 O -0.579 6.579 18 C -0.545 4.545 19 H 0.038 0.962 20 C 0.034 3.966 21 N -0.937 5.937 22 Si 0.922 3.078 23 H -0.286 1.286 24 H -0.301 1.301 25 H -0.201 1.201 26 C 0.066 3.934 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.194 0.806 31 H 0.178 0.822 32 H 0.163 0.837 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.382 0.618 38 H 0.266 0.734 39 H 0.048 0.952 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 -15.437 9.645 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.254 3.746 3 O -0.322 6.322 4 C -0.167 4.167 5 C -0.008 4.008 6 C -0.156 4.156 7 N 0.552 4.448 8 O -0.391 6.391 9 O -0.378 6.378 10 C -0.027 4.027 11 C -0.183 4.183 12 C 0.084 3.916 13 N -0.209 5.209 14 C -0.079 4.079 15 C -0.166 4.166 16 C 0.174 3.826 17 O -0.387 6.387 18 C -0.582 4.582 19 H 0.056 0.944 20 C -0.166 4.166 21 N -0.576 5.576 22 Si 0.747 3.253 23 H -0.212 1.212 24 H -0.229 1.229 25 H -0.123 1.123 26 C -0.060 4.060 27 H 0.139 0.861 28 H 0.108 0.892 29 H 0.128 0.872 30 H 0.211 0.789 31 H 0.195 0.805 32 H 0.181 0.819 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.231 0.769 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.619 -14.155 9.348 19.501 hybrid contribution 0.889 -0.362 -0.875 1.299 sum -8.730 -14.517 8.474 18.941 Atomic orbital electron populations 1.22315 0.89809 1.06237 1.06613 1.22811 0.93208 0.86429 0.72124 1.90754 1.72728 1.34385 1.34367 1.20770 0.92606 0.95728 1.07554 1.21463 1.03190 0.87532 0.88574 1.21059 0.93025 0.83359 1.18196 1.43650 1.01144 1.02916 0.97060 1.94550 1.69762 1.20208 1.54551 1.94523 0.95863 1.94259 1.53123 1.21261 0.90742 1.00986 0.89741 1.21997 1.02578 0.90894 1.02854 1.20041 0.93516 0.89988 0.88032 1.62256 1.25667 1.29019 1.03947 1.23440 0.92490 0.99340 0.92611 1.22967 0.99346 0.98367 0.95890 1.19629 0.83144 0.87535 0.92245 1.86399 1.17262 1.48678 1.86394 1.21607 1.51881 0.92762 0.91980 0.94394 1.25762 0.92738 0.98799 0.99259 1.70062 1.50852 1.26649 1.10040 0.86356 0.78824 0.82744 0.77381 1.21227 1.22903 1.12262 1.23013 0.92694 0.98648 0.91626 0.86081 0.89214 0.87171 0.78942 0.80464 0.81935 0.88880 0.90806 0.88681 0.92367 0.76903 0.92499 0.93362 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.85 9.82 71.24 0.70 -2.15 16 2 C 0.38 9.89 7.21 27.89 0.20 10.09 16 3 O -0.45 -16.88 15.78 -3.12 -0.05 -16.93 16 4 C -0.16 -3.99 5.89 -20.05 -0.12 -4.11 16 5 C 0.01 0.22 8.88 22.57 0.20 0.42 16 6 C -0.07 -1.48 6.84 36.34 0.25 -1.23 16 7 N 0.03 0.79 4.45 -46.54 -0.21 0.58 16 8 O -0.18 -4.35 18.43 18.88 0.35 -4.00 16 9 O -0.16 -3.68 18.42 18.88 0.35 -3.33 16 10 C -0.01 -0.15 9.54 22.31 0.21 0.07 16 11 C -0.16 -3.66 7.94 22.37 0.18 -3.48 16 12 C 0.18 5.11 4.83 38.82 0.19 5.29 16 13 N -0.49 -17.13 3.22 -681.94 -2.19 -19.33 16 14 C 0.05 1.36 6.38 86.65 0.55 1.92 16 15 C -0.13 -4.52 6.34 31.80 0.20 -4.32 16 16 C 0.21 9.20 0.84 -10.66 -0.01 9.19 16 17 O -0.58 -22.39 10.01 -148.98 -1.49 -23.88 16 18 C -0.54 -29.96 8.68 25.60 0.22 -29.73 16 19 H 0.04 2.34 7.84 -2.91 -0.02 2.31 16 20 C 0.03 1.96 5.26 84.65 0.45 2.41 16 21 N -0.94 -58.28 13.96 21.45 0.30 -57.98 16 22 Si 0.92 44.17 24.11 68.60 1.65 45.83 16 23 H -0.29 -13.63 6.95 99.48 0.69 -12.94 16 24 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 25 H -0.20 -8.78 5.51 99.48 0.55 -8.23 16 26 C 0.07 2.74 4.04 86.45 0.35 3.09 16 27 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.11 0.99 6.34 -2.39 -0.02 0.97 16 30 H 0.19 2.29 5.81 -2.91 -0.02 2.27 16 31 H 0.18 2.58 7.59 -2.91 -0.02 2.56 16 32 H 0.16 3.40 7.00 -2.91 -0.02 3.38 16 33 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 1.81 6.37 -2.39 -0.02 1.79 16 35 H 0.09 2.80 8.08 -2.39 -0.02 2.78 16 36 H 0.06 2.34 7.72 -2.39 -0.02 2.32 16 37 H 0.38 12.62 9.07 -74.05 -0.67 11.95 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.05 1.90 6.19 -2.38 -0.01 1.88 16 40 H 0.06 2.83 6.12 -2.39 -0.01 2.82 16 Total: -1.00 -74.20 331.31 2.55 -71.65 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.27 Total: 19.94 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 3.57 Total: -12.56 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -2.10 Total: -76.72 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -0.85 Total: -48.14 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.65 Total: 45.83 kcal Total: -74.20 2.55 -71.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826623743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.126 kcal (2) G-P(sol) polarization free energy of solvation -74.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds