Wall clock time and date at job start Tue Mar 31 2020 12:20:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.34159 * 127.02334 * 2 1
4 4 O 1.34221 * 109.13845 * 179.87043 * 3 2 1
5 5 C 1.33623 * 110.93038 * 0.41772 * 4 3 2
6 6 C 1.36506 * 108.38040 * 359.75131 * 5 4 3
7 7 C 1.47225 * 127.20009 * 179.97438 * 6 5 4
8 8 O 1.21538 * 119.99951 * 180.02562 * 7 6 5
9 9 O 1.34769 * 120.00275 * 0.02562 * 7 6 5
10 10 C 1.45201 * 117.00200 * 180.02562 * 9 7 6
11 11 C 1.50709 * 109.47286 * 179.97438 * 10 9 7
12 12 O 1.21287 * 119.99623 * 359.97438 * 11 10 9
13 13 N 1.34775 * 120.00066 * 180.02562 * 11 10 9
14 14 C 1.46499 * 119.99735 * 180.02562 * 13 11 10
15 15 C 1.50693 * 109.47326 * 90.00031 * 14 13 11
16 16 H 1.07998 * 120.00037 * 359.97438 * 15 14 13
17 17 C 1.37879 * 120.00177 * 179.97438 * 15 14 13
18 18 N 1.31510 * 119.99834 * 179.97438 * 17 15 14
19 19 Si 1.86799 * 119.99778 * 359.97438 * 17 15 14
20 20 H 1.48504 * 109.46999 * 90.00491 * 19 17 15
21 21 H 1.48496 * 109.47071 * 209.99929 * 19 17 15
22 22 H 1.48498 * 109.47215 * 330.00285 * 19 17 15
23 23 C 1.46500 * 119.99803 * 359.97438 * 13 11 10
24 24 C 1.52998 * 109.47098 * 90.00350 * 23 13 11
25 25 C 1.47194 * 109.47285 * 179.97438 * 24 23 13
26 26 N 9.30392 * 75.63444 * 189.52717 * 2 1 3
27 27 H 1.09002 * 109.47152 * 269.68075 * 1 2 3
28 28 H 1.09001 * 109.46980 * 149.68175 * 1 2 3
29 29 H 1.09004 * 109.47113 * 29.68156 * 1 2 3
30 30 H 1.07994 * 125.43178 * 0.02562 * 3 2 1
31 31 H 1.07992 * 125.81273 * 179.77208 * 5 4 3
32 32 H 1.08993 * 109.47288 * 299.99829 * 10 9 7
33 33 H 1.09001 * 109.47300 * 59.99840 * 10 9 7
34 34 H 1.09004 * 109.46509 * 209.99842 * 14 13 11
35 35 H 1.09001 * 109.47121 * 329.99460 * 14 13 11
36 36 H 0.97004 * 120.00038 * 179.97438 * 18 17 15
37 37 H 1.08997 * 109.46447 * 209.99793 * 23 13 11
38 38 H 1.08993 * 109.47515 * 330.00116 * 23 13 11
39 39 H 1.09008 * 109.47028 * 299.99560 * 24 23 13
40 40 H 1.08999 * 109.47450 * 59.99278 * 24 23 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3149 1.0711 0.0000
4 8 3.5922 0.6589 0.0029
5 6 3.6632 -0.6754 -0.0043
6 6 2.3925 -1.1741 -0.0066
7 6 1.9923 -2.5909 -0.0146
8 8 0.8142 -2.8896 -0.0162
9 8 2.9323 -3.5566 -0.0200
10 6 2.4650 -4.9314 -0.0284
11 6 3.6486 -5.8643 -0.0342
12 8 4.7750 -5.4147 -0.0321
13 7 3.4553 -7.1981 -0.0428
14 6 4.6058 -8.1049 -0.0479
15 6 4.9995 -8.4250 1.3710
16 1 4.4482 -7.9955 2.1944
17 6 6.0637 -9.2661 1.6182
18 7 6.4076 -9.5449 2.8566
19 14 7.0170 -10.0095 0.1941
20 1 8.1369 -9.1073 -0.1764
21 1 7.5593 -11.3315 0.5981
22 1 6.1127 -10.1805 -0.9712
23 6 2.0946 -7.7410 -0.0460
24 6 1.6205 -7.9207 -1.4895
25 6 0.2536 -8.4667 -1.4927
26 7 -0.8013 -8.8887 -1.4918
27 1 -0.3633 -0.0057 1.0277
28 1 -0.3633 -0.8871 -0.5188
29 1 -0.3633 0.8929 -0.5089
30 1 1.9893 2.1008 0.0004
31 1 4.5713 -1.2599 -0.0074
32 1 1.8613 -5.1153 0.8603
33 1 1.8618 -5.1047 -0.9195
34 1 4.3405 -9.0255 -0.5678
35 1 5.4424 -7.6276 -0.5583
36 1 7.1560 -10.1370 3.0305
37 1 2.0872 -8.7056 0.4616
38 1 1.4274 -7.0525 0.4725
39 1 1.6280 -6.9560 -1.9971
40 1 2.2877 -8.6092 -2.0081
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000859778925.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:36
Heat of formation + Delta-G solvation = -71.073262 kcal
Electronic energy + Delta-G solvation = -25950.079530 eV
Core-core repulsion = 21925.674263 eV
Total energy + Delta-G solvation = -4024.405267 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.125 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-42.87318 -40.42667 -39.22973 -36.99997 -36.40012 -35.39929 -34.15898 -32.89712
-31.26416 -31.11143 -29.47917 -27.52478 -27.26509 -24.38610 -24.09879 -22.39440
-21.04290 -20.38098 -18.93489 -18.33399 -17.85252 -17.12528 -16.92401 -16.77051
-16.53012 -16.21910 -15.95817 -15.39956 -14.81993 -14.69859 -14.53371 -14.03116
-13.77746 -13.70382 -13.44661 -13.30270 -12.84942 -12.80079 -12.71871 -12.56286
-12.49781 -12.30954 -11.90293 -11.82113 -11.66858 -11.16592 -11.07484 -10.72722
-10.71155 -10.61795 -10.27905 -9.89362 -9.66259 -9.29632 -8.99399 -8.67570
-8.06849 -6.16826 -4.17460 0.96300 1.66765 2.23030 2.63128 2.69889
2.73954 2.87736 3.00417 3.22983 3.28073 3.31160 3.49920 4.02721
4.26075 4.31413 4.36972 4.66754 4.73933 4.83816 4.92216 4.98294
5.05183 5.12861 5.16545 5.19133 5.34477 5.44095 5.57504 5.63473
5.64773 5.73156 5.93005 6.07161 6.26720 6.48776 6.64673 6.76318
7.03462 7.47824 7.50096 7.63612 7.87887 8.34144 8.62230 8.86434
9.41705 10.96276
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.012115 B = 0.003302 C = 0.002717
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2310.640172 B = 8476.897603 C =10301.519094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.089 4.089
2 C -0.129 4.129
3 C -0.048 4.048
4 O -0.170 6.170
5 C 0.066 3.934
6 C -0.232 4.232
7 C 0.538 3.462
8 O -0.506 6.506
9 O -0.328 6.328
10 C 0.050 3.950
11 C 0.513 3.487
12 O -0.509 6.509
13 N -0.587 5.587
14 C 0.217 3.783
15 C -0.536 4.536
16 H 0.076 0.924
17 C 0.074 3.926
18 N -0.894 5.894
19 Si 0.875 3.125
20 H -0.273 1.273
21 H -0.285 1.285
22 H -0.265 1.265
23 C 0.111 3.889
24 C -0.051 4.051
25 C 0.214 3.786
26 N -0.439 5.439
27 H 0.072 0.928
28 H 0.081 0.919
29 H 0.067 0.933
30 H 0.210 0.790
31 H 0.226 0.774
32 H 0.101 0.899
33 H 0.097 0.903
34 H 0.036 0.964
35 H 0.042 0.958
36 H 0.266 0.734
37 H 0.103 0.897
38 H 0.080 0.920
39 H 0.107 0.893
40 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.091 17.146 -8.710 21.272
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.131 4.131
3 C -0.114 4.114
4 O -0.064 6.064
5 C -0.005 4.005
6 C -0.234 4.234
7 C 0.383 3.617
8 O -0.395 6.395
9 O -0.244 6.244
10 C -0.027 4.027
11 C 0.297 3.703
12 O -0.383 6.383
13 N -0.320 5.320
14 C 0.097 3.903
15 C -0.574 4.574
16 H 0.094 0.906
17 C -0.129 4.129
18 N -0.532 5.532
19 Si 0.702 3.298
20 H -0.198 1.198
21 H -0.211 1.211
22 H -0.189 1.189
23 C -0.015 4.015
24 C -0.092 4.092
25 C -0.104 4.104
26 N -0.116 5.116
27 H 0.090 0.910
28 H 0.100 0.900
29 H 0.085 0.915
30 H 0.226 0.774
31 H 0.243 0.757
32 H 0.119 0.881
33 H 0.115 0.885
34 H 0.054 0.946
35 H 0.060 0.940
36 H 0.076 0.924
37 H 0.121 0.879
38 H 0.098 0.902
39 H 0.125 0.875
40 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -10.006 16.723 -8.589 21.297
hybrid contribution 0.692 -0.624 -0.505 1.059
sum -9.314 16.100 -9.093 20.704
Atomic orbital electron populations
1.20269 0.88132 1.03309 1.02806 1.21372 0.97280 0.89933 1.04475
1.23708 0.79600 0.99684 1.08381 1.83838 1.29653 1.22509 1.70447
1.24928 0.99528 0.80491 0.95505 1.20415 0.94030 0.90718 1.18261
1.20001 0.83699 0.85267 0.72718 1.90827 1.18660 1.83621 1.46420
1.86589 1.38291 1.15504 1.83968 1.22945 0.96726 0.78420 1.04655
1.19738 0.89518 0.82783 0.78216 1.90734 1.24252 1.75654 1.47692
1.47801 1.07135 1.04871 1.72176 1.19788 0.83813 0.87912 0.98796
1.21289 1.15908 1.29046 0.91158 0.90558 1.24852 0.96523 0.95907
0.95589 1.69887 1.28156 1.36263 1.18851 0.86870 0.81100 0.78968
0.82847 1.19831 1.21068 1.18930 1.21438 0.83897 1.02745 0.93375
1.19875 0.85241 1.02877 1.01256 1.28985 0.94676 0.93351 0.93367
1.81234 1.12511 1.09525 1.08308 0.90964 0.90003 0.91455 0.77391
0.75746 0.88138 0.88499 0.94566 0.94028 0.92420 0.87914 0.90209
0.87544 0.86398
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.76 10.00 36.01 0.36 -0.40 16
2 C -0.13 -1.29 6.37 -102.48 -0.65 -1.94 16
3 C -0.05 -0.38 11.96 29.30 0.35 -0.03 16
4 O -0.17 -1.56 10.52 7.71 0.08 -1.47 16
5 C 0.07 0.65 11.94 30.11 0.36 1.01 16
6 C -0.23 -2.75 6.31 -103.30 -0.65 -3.40 16
7 C 0.54 7.48 7.95 34.38 0.27 7.75 16
8 O -0.51 -7.66 15.20 -19.30 -0.29 -7.95 16
9 O -0.33 -4.86 9.61 -47.36 -0.45 -5.32 16
10 C 0.05 0.68 4.51 36.01 0.16 0.85 16
11 C 0.51 9.05 7.75 -10.98 -0.09 8.96 16
12 O -0.51 -11.28 16.08 -14.11 -0.23 -11.50 16
13 N -0.59 -9.98 2.46 -175.06 -0.43 -10.41 16
14 C 0.22 4.59 4.23 -5.20 -0.02 4.56 16
15 C -0.54 -14.14 9.94 -34.44 -0.34 -14.48 16
16 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16
17 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16
18 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16
19 Si 0.88 20.10 27.47 -169.99 -4.67 15.43 16
20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
22 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16
23 C 0.11 1.37 5.17 -4.04 -0.02 1.35 16
24 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16
25 C 0.21 2.47 15.43 -20.76 -0.32 2.15 16
26 N -0.44 -6.32 18.54 42.16 0.78 -5.54 16
27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.08 0.85 6.91 -51.93 -0.36 0.49 16
29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
30 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16
31 H 0.23 1.77 8.06 -52.49 -0.42 1.35 16
32 H 0.10 1.27 7.40 -51.93 -0.38 0.89 16
33 H 0.10 1.05 7.18 -51.93 -0.37 0.68 16
34 H 0.04 0.70 7.13 -51.93 -0.37 0.33 16
35 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16
36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16
37 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16
38 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16
39 H 0.11 0.79 7.22 -51.92 -0.37 0.41 16
40 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16
LS Contribution 361.75 15.07 5.45 5.45
Total: -1.00 -35.88 361.75 -4.53 -40.40
By element:
Atomic # 1 Polarization: 3.49 SS G_CDS: -4.67 Total: -1.18 kcal
Atomic # 6 Polarization: 8.55 SS G_CDS: -0.87 Total: 7.68 kcal
Atomic # 7 Polarization: -42.67 SS G_CDS: 1.13 Total: -41.54 kcal
Atomic # 8 Polarization: -25.35 SS G_CDS: -0.89 Total: -26.25 kcal
Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -35.88 -4.53 -40.40 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000859778925.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.670 kcal
(2) G-P(sol) polarization free energy of solvation -35.878 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.548 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.525 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.073 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds