Wall clock time and date at job start Tue Mar 31 2020 12:20:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.34159 * 127.02334 * 2 1
4 4 O 1.34221 * 109.13845 * 179.87043 * 3 2 1
5 5 C 1.33623 * 110.93038 * 0.41772 * 4 3 2
6 6 C 1.36506 * 108.38040 * 359.75131 * 5 4 3
7 7 C 1.47225 * 127.20009 * 179.97438 * 6 5 4
8 8 O 1.21538 * 119.99951 * 180.02562 * 7 6 5
9 9 O 1.34769 * 120.00275 * 0.02562 * 7 6 5
10 10 C 1.45201 * 117.00200 * 180.02562 * 9 7 6
11 11 C 1.50709 * 109.47286 * 179.97438 * 10 9 7
12 12 O 1.21287 * 119.99623 * 359.97438 * 11 10 9
13 13 N 1.34775 * 120.00066 * 180.02562 * 11 10 9
14 14 C 1.46499 * 119.99735 * 180.02562 * 13 11 10
15 15 C 1.50693 * 109.47326 * 90.00031 * 14 13 11
16 16 H 1.07998 * 120.00037 * 359.97438 * 15 14 13
17 17 C 1.37879 * 120.00177 * 179.97438 * 15 14 13
18 18 N 1.31510 * 119.99834 * 179.97438 * 17 15 14
19 19 Si 1.86799 * 119.99778 * 359.97438 * 17 15 14
20 20 H 1.48504 * 109.46999 * 90.00491 * 19 17 15
21 21 H 1.48496 * 109.47071 * 209.99929 * 19 17 15
22 22 H 1.48498 * 109.47215 * 330.00285 * 19 17 15
23 23 C 1.46500 * 119.99803 * 359.97438 * 13 11 10
24 24 C 1.52998 * 109.47098 * 90.00350 * 23 13 11
25 25 C 1.47194 * 109.47285 * 179.97438 * 24 23 13
26 26 N 9.30392 * 75.63444 * 189.52717 * 2 1 3
27 27 H 1.09002 * 109.47152 * 269.68075 * 1 2 3
28 28 H 1.09001 * 109.46980 * 149.68175 * 1 2 3
29 29 H 1.09004 * 109.47113 * 29.68156 * 1 2 3
30 30 H 1.07994 * 125.43178 * 0.02562 * 3 2 1
31 31 H 1.07992 * 125.81273 * 179.77208 * 5 4 3
32 32 H 1.08993 * 109.47288 * 299.99829 * 10 9 7
33 33 H 1.09001 * 109.47300 * 59.99840 * 10 9 7
34 34 H 1.09004 * 109.46509 * 209.99842 * 14 13 11
35 35 H 1.09001 * 109.47121 * 329.99460 * 14 13 11
36 36 H 0.97004 * 120.00038 * 179.97438 * 18 17 15
37 37 H 1.08997 * 109.46447 * 209.99793 * 23 13 11
38 38 H 1.08993 * 109.47515 * 330.00116 * 23 13 11
39 39 H 1.09008 * 109.47028 * 299.99560 * 24 23 13
40 40 H 1.08999 * 109.47450 * 59.99278 * 24 23 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3149 1.0711 0.0000
4 8 3.5922 0.6589 0.0029
5 6 3.6632 -0.6754 -0.0043
6 6 2.3925 -1.1741 -0.0066
7 6 1.9923 -2.5909 -0.0146
8 8 0.8142 -2.8896 -0.0162
9 8 2.9323 -3.5566 -0.0200
10 6 2.4650 -4.9314 -0.0284
11 6 3.6486 -5.8643 -0.0342
12 8 4.7750 -5.4147 -0.0321
13 7 3.4553 -7.1981 -0.0428
14 6 4.6058 -8.1049 -0.0479
15 6 4.9995 -8.4250 1.3710
16 1 4.4482 -7.9955 2.1944
17 6 6.0637 -9.2661 1.6182
18 7 6.4076 -9.5449 2.8566
19 14 7.0170 -10.0095 0.1941
20 1 8.1369 -9.1073 -0.1764
21 1 7.5593 -11.3315 0.5981
22 1 6.1127 -10.1805 -0.9712
23 6 2.0946 -7.7410 -0.0460
24 6 1.6205 -7.9207 -1.4895
25 6 0.2536 -8.4667 -1.4927
26 7 -0.8013 -8.8887 -1.4918
27 1 -0.3633 -0.0057 1.0277
28 1 -0.3633 -0.8871 -0.5188
29 1 -0.3633 0.8929 -0.5089
30 1 1.9893 2.1008 0.0004
31 1 4.5713 -1.2599 -0.0074
32 1 1.8613 -5.1153 0.8603
33 1 1.8618 -5.1047 -0.9195
34 1 4.3405 -9.0255 -0.5678
35 1 5.4424 -7.6276 -0.5583
36 1 7.1560 -10.1370 3.0305
37 1 2.0872 -8.7056 0.4616
38 1 1.4274 -7.0525 0.4725
39 1 1.6280 -6.9560 -1.9971
40 1 2.2877 -8.6092 -2.0081
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000859778925.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:36
Heat of formation + Delta-G solvation = -94.097397 kcal
Electronic energy + Delta-G solvation = -25951.077931 eV
Core-core repulsion = 21925.674263 eV
Total energy + Delta-G solvation = -4025.403668 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.125 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-43.59490 -41.57443 -40.54013 -38.07498 -37.50675 -36.74071 -34.89518 -34.81780
-32.45037 -32.04290 -30.81301 -28.78118 -28.16048 -25.39721 -25.28176 -24.01575
-21.86072 -21.21118 -20.25559 -19.27414 -19.16651 -18.53940 -18.17940 -17.80444
-17.70616 -17.15621 -17.05158 -16.50647 -16.14626 -15.80849 -15.68021 -15.29918
-14.84279 -14.66466 -14.42207 -14.37793 -14.04629 -13.90174 -13.80660 -13.71158
-13.60282 -13.47517 -13.29026 -13.03649 -12.71050 -12.51615 -12.39050 -12.10342
-11.95922 -11.76993 -11.75143 -11.67932 -10.78134 -10.75283 -10.69692 -9.66558
-9.57235 -8.26828 -6.32388 0.09126 0.98896 1.15439 1.41705 1.45437
1.52661 1.54832 1.76374 1.83952 1.94662 2.01149 2.33060 2.38229
3.03184 3.11026 3.49567 3.52847 3.63620 3.84566 3.97587 4.03587
4.07773 4.12717 4.29883 4.49735 4.53324 4.77995 4.81427 4.84376
4.90018 4.96340 5.00741 5.04341 5.06685 5.19102 5.49384 5.50575
5.55560 5.93472 6.27212 6.46874 6.60461 6.63355 6.71418 7.18703
7.34189 8.90038
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.012115 B = 0.003302 C = 0.002717
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2310.640172 B = 8476.897603 C =10301.519094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 C -0.156 4.156
3 C -0.028 4.028
4 O -0.171 6.171
5 C 0.074 3.926
6 C -0.265 4.265
7 C 0.539 3.461
8 O -0.524 6.524
9 O -0.343 6.343
10 C 0.055 3.945
11 C 0.510 3.490
12 O -0.563 6.563
13 N -0.586 5.586
14 C 0.223 3.777
15 C -0.537 4.537
16 H 0.030 0.970
17 C 0.009 3.991
18 N -0.949 5.949
19 Si 0.944 3.056
20 H -0.277 1.277
21 H -0.286 1.286
22 H -0.223 1.223
23 C 0.105 3.895
24 C -0.039 4.039
25 C 0.243 3.757
26 N -0.490 5.490
27 H 0.071 0.929
28 H 0.058 0.942
29 H 0.095 0.905
30 H 0.252 0.748
31 H 0.238 0.762
32 H 0.112 0.888
33 H 0.133 0.867
34 H 0.068 0.932
35 H 0.031 0.969
36 H 0.266 0.734
37 H 0.094 0.906
38 H 0.099 0.901
39 H 0.136 0.864
40 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.771 18.356 -11.150 23.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.157 4.157
3 C -0.093 4.093
4 O -0.065 6.065
5 C 0.003 3.997
6 C -0.267 4.267
7 C 0.386 3.614
8 O -0.415 6.415
9 O -0.259 6.259
10 C -0.022 4.022
11 C 0.297 3.703
12 O -0.441 6.441
13 N -0.318 5.318
14 C 0.102 3.898
15 C -0.576 4.576
16 H 0.048 0.952
17 C -0.189 4.189
18 N -0.590 5.590
19 Si 0.767 3.233
20 H -0.203 1.203
21 H -0.211 1.211
22 H -0.146 1.146
23 C -0.019 4.019
24 C -0.079 4.079
25 C -0.074 4.074
26 N -0.168 5.168
27 H 0.090 0.910
28 H 0.077 0.923
29 H 0.113 0.887
30 H 0.268 0.732
31 H 0.254 0.746
32 H 0.130 0.870
33 H 0.151 0.849
34 H 0.086 0.914
35 H 0.049 0.951
36 H 0.075 0.925
37 H 0.112 0.888
38 H 0.117 0.883
39 H 0.154 0.846
40 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -10.753 17.934 -11.050 23.651
hybrid contribution 0.883 -0.892 0.366 1.308
sum -9.870 17.042 -10.684 22.405
Atomic orbital electron populations
1.20252 0.87480 1.03573 1.02829 1.21650 0.98052 0.89852 1.06129
1.24478 0.78454 1.00883 1.05506 1.83874 1.30532 1.22001 1.70055
1.25144 0.99375 0.80888 0.94309 1.20620 0.95580 0.90180 1.20368
1.20323 0.83319 0.85755 0.72042 1.90805 1.19165 1.83915 1.47614
1.86586 1.39106 1.15999 1.84215 1.22948 0.94829 0.77488 1.06904
1.20377 0.89917 0.83226 0.76761 1.90705 1.26587 1.76627 1.50179
1.47722 1.07959 1.04490 1.71597 1.19513 0.85299 0.89725 0.95307
1.21617 1.15176 1.27979 0.92816 0.95210 1.25866 0.97826 0.96697
0.98490 1.70064 1.29305 1.37873 1.21731 0.85767 0.79743 0.77456
0.80316 1.20305 1.21149 1.14576 1.21652 0.81766 1.02669 0.95827
1.19873 0.83974 1.04847 0.99252 1.29183 0.94473 0.91908 0.91823
1.81279 1.14230 1.11415 1.09875 0.91029 0.92252 0.88670 0.73235
0.74593 0.86996 0.84899 0.91379 0.95125 0.92500 0.88776 0.88301
0.84617 0.84556
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.34 10.00 71.24 0.71 -0.63 16
2 C -0.16 -2.86 6.37 -18.48 -0.12 -2.98 16
3 C -0.03 -0.36 11.96 66.89 0.80 0.44 16
4 O -0.17 -2.77 10.52 4.67 0.05 -2.72 16
5 C 0.07 1.38 11.94 67.41 0.80 2.18 16
6 C -0.26 -6.11 6.31 -19.01 -0.12 -6.23 16
7 C 0.54 14.76 7.95 70.18 0.56 15.32 16
8 O -0.52 -15.58 15.20 19.71 0.30 -15.28 16
9 O -0.34 -10.01 9.61 -50.41 -0.48 -10.50 16
10 C 0.05 1.42 4.51 71.24 0.32 1.75 16
11 C 0.51 17.64 7.75 87.66 0.68 18.32 16
12 O -0.56 -25.23 16.08 15.75 0.25 -24.98 16
13 N -0.59 -19.10 2.46 -826.16 -2.03 -21.13 16
14 C 0.22 9.15 4.23 85.63 0.36 9.51 16
15 C -0.54 -28.91 9.94 25.60 0.25 -28.66 16
16 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16
17 C 0.01 0.49 5.47 84.66 0.46 0.96 16
18 N -0.95 -58.02 13.96 21.45 0.30 -57.73 16
19 Si 0.94 40.97 27.47 68.60 1.88 42.85 16
20 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16
21 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16
22 H -0.22 -8.13 6.54 99.48 0.65 -7.48 16
23 C 0.11 2.35 5.17 86.38 0.45 2.79 16
24 C -0.04 -0.58 6.03 28.79 0.17 -0.40 16
25 C 0.24 4.96 15.43 89.44 1.38 6.34 16
26 N -0.49 -13.34 18.54 20.01 0.37 -12.97 16
27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
28 H 0.06 1.20 6.91 -2.39 -0.02 1.19 16
29 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16
30 H 0.25 0.79 8.06 -2.91 -0.02 0.76 16
31 H 0.24 3.60 8.06 -2.91 -0.02 3.58 16
32 H 0.11 2.66 7.40 -2.39 -0.02 2.65 16
33 H 0.13 2.46 7.18 -2.39 -0.02 2.44 16
34 H 0.07 2.40 7.13 -2.39 -0.02 2.38 16
35 H 0.03 1.35 6.85 -2.39 -0.02 1.33 16
36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16
37 H 0.09 2.31 8.07 -2.39 -0.02 2.29 16
38 H 0.10 1.84 6.44 -2.39 -0.02 1.83 16
39 H 0.14 1.36 7.22 -2.38 -0.02 1.34 16
40 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16
Total: -1.00 -83.05 361.75 8.39 -74.66
By element:
Atomic # 1 Polarization: 8.05 SS G_CDS: 1.03 Total: 9.08 kcal
Atomic # 6 Polarization: 11.99 SS G_CDS: 6.72 Total: 18.71 kcal
Atomic # 7 Polarization: -90.47 SS G_CDS: -1.36 Total: -91.83 kcal
Atomic # 8 Polarization: -53.59 SS G_CDS: 0.12 Total: -53.47 kcal
Atomic # 14 Polarization: 40.97 SS G_CDS: 1.88 Total: 42.85 kcal
Total: -83.05 8.39 -74.66 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000859778925.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.442 kcal
(2) G-P(sol) polarization free energy of solvation -83.046 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.488 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.390 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.655 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.097 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds