Wall clock time and date at job start Tue Mar 31 2020 13:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47212 * 2 1 4 4 C 1.52998 * 109.47272 * 239.99733 * 2 1 3 5 5 C 1.50702 * 109.46822 * 64.99834 * 4 2 1 6 6 H 1.07997 * 120.00204 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99673 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00153 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00201 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46707 * 90.00275 * 9 7 5 11 11 H 1.48498 * 109.47378 * 210.00183 * 9 7 5 12 12 H 1.48495 * 109.47317 * 330.00534 * 9 7 5 13 13 C 1.53004 * 109.47156 * 119.99581 * 2 1 3 14 14 N 1.46499 * 109.46954 * 295.00365 * 13 2 1 15 15 C 1.39785 * 119.99397 * 180.02562 * 14 13 2 16 16 C 1.38948 * 119.99823 * 179.97438 * 15 14 13 17 17 C 1.38025 * 120.01193 * 179.97438 * 16 15 14 18 18 C 1.38835 * 120.01902 * 359.97438 * 17 16 15 19 19 N 1.40346 * 119.99100 * 179.97438 * 18 17 16 20 20 C 1.34674 * 126.84031 * 312.56453 * 19 18 17 21 21 N 1.30885 * 108.04265 * 179.89884 * 20 19 18 22 22 C 1.33239 * 109.83671 * 0.37825 * 21 20 19 23 23 N 1.30774 * 108.99167 * 359.76746 * 22 21 20 24 24 C 1.38940 * 120.00989 * 359.97438 * 18 17 16 25 25 Cl 1.73600 * 120.00636 * 180.02562 * 24 18 17 26 26 C 1.38145 * 119.98218 * 0.02562 * 24 18 17 27 27 H 1.08996 * 109.47112 * 60.00051 * 1 2 3 28 28 H 1.09000 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47136 * 300.00059 * 1 2 3 30 30 H 1.08997 * 109.47377 * 184.99798 * 4 2 1 31 31 H 1.09000 * 109.47256 * 305.00430 * 4 2 1 32 32 H 0.96995 * 120.00496 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47253 * 174.99643 * 13 2 1 34 34 H 1.08998 * 109.46990 * 55.00075 * 13 2 1 35 35 H 0.96996 * 120.00670 * 359.97438 * 14 13 2 36 36 H 1.08001 * 119.99404 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.98611 * 179.70033 * 17 16 15 38 38 H 1.08000 * 125.98247 * 0.03539 * 20 19 18 39 39 H 1.08002 * 125.49972 * 179.75831 * 22 21 20 40 40 H 1.08004 * 120.01020 * 180.02562 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0799 0.9740 -2.3757 7 6 1.9923 -0.4024 -3.7282 8 7 1.6449 0.2770 -4.7994 9 14 2.9628 -1.9890 -3.9027 10 1 2.0235 -3.1334 -4.0188 11 1 3.8109 -1.9193 -5.1197 12 1 3.8252 -2.1756 -2.7084 13 6 2.0400 -0.7212 1.2493 14 7 1.6524 0.0355 2.4424 15 6 2.0092 -0.4296 3.7114 16 6 1.6420 0.2883 4.8430 17 6 1.9938 -0.1710 6.0961 18 6 2.7141 -1.3506 6.2267 19 7 3.0719 -1.8168 7.5012 20 6 3.6269 -1.0996 8.4968 21 7 3.8042 -1.8962 9.5201 22 6 3.3851 -3.1237 9.2155 23 7 2.9282 -3.1255 7.9901 24 6 3.0808 -2.0697 5.0958 25 17 3.9809 -3.5451 5.2591 26 6 2.7289 -1.6103 3.8414 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.1263 -0.7995 -1.2056 31 1 1.6054 -1.7198 -1.2951 32 1 1.8915 -0.0463 -5.6800 33 1 3.1263 -0.7995 1.2057 34 1 1.6054 -1.7197 1.2953 35 1 1.1488 0.8595 2.3518 36 1 1.0813 1.2058 4.7419 37 1 1.7124 0.3899 6.9752 38 1 3.8794 -0.0502 8.4586 39 1 3.4175 -3.9790 9.8741 40 1 3.0133 -2.1691 2.9620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876854171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:24 Heat of formation + Delta-G solvation = 105.228771 kcal Electronic energy + Delta-G solvation = -23150.580157 eV Core-core repulsion = 19606.821836 eV Total energy + Delta-G solvation = -3543.758321 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.40693 -39.91519 -37.37273 -36.54582 -34.91737 -33.11077 -32.00249 -31.55363 -31.08672 -28.79505 -27.46899 -26.13667 -23.71145 -23.61679 -22.38970 -21.75975 -21.27062 -19.53472 -18.59261 -17.52046 -17.03365 -16.46434 -15.83479 -15.36743 -15.01986 -14.94345 -14.43852 -14.41491 -14.15987 -14.10981 -13.85412 -13.38593 -13.03030 -12.80911 -12.44968 -12.42368 -11.98202 -11.77615 -11.70996 -11.21991 -11.20614 -11.03192 -10.75606 -10.65915 -10.29440 -10.11859 -9.99831 -9.87858 -9.79252 -9.69206 -9.24342 -9.17838 -8.63256 -7.62319 -6.13471 -4.12255 0.66590 0.85891 1.59366 1.80833 2.11381 2.71755 3.23711 3.26878 3.27896 3.32563 3.33874 4.05301 4.29518 4.36467 4.52126 4.66145 4.81543 4.96040 5.04526 5.18699 5.23350 5.28383 5.37235 5.52403 5.62368 5.77022 5.79732 5.91753 6.01562 6.08003 6.13696 6.17021 6.22746 6.52173 6.67317 6.72567 6.86828 7.04330 7.07709 7.24143 7.51520 7.67570 7.81555 8.42249 8.90086 9.48376 10.99531 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.025668 B = 0.002467 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.583125 B =11349.136736 C =12211.357427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.074 0.926 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.265 1.265 13 C 0.115 3.885 14 N -0.725 5.725 15 C 0.251 3.749 16 C -0.184 4.184 17 C -0.049 4.049 18 C 0.060 3.940 19 N -0.317 5.317 20 C 0.257 3.743 21 N -0.544 5.544 22 C 0.191 3.809 23 N -0.300 5.300 24 C 0.036 3.964 25 Cl -0.046 7.046 26 C -0.185 4.185 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.032 0.968 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.405 0.595 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.219 0.781 39 H 0.217 0.783 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.890 -1.605 24.841 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.044 4.044 5 C -0.556 4.556 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.540 5.540 9 Si 0.705 3.295 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 C -0.008 4.008 14 N -0.350 5.350 15 C 0.141 3.859 16 C -0.207 4.207 17 C -0.070 4.070 18 C -0.035 4.035 19 N -0.102 5.102 20 C -0.038 4.038 21 N -0.271 5.271 22 C -0.111 4.111 23 N -0.126 5.126 24 C 0.006 3.994 25 Cl -0.016 7.016 26 C -0.209 4.209 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.242 0.758 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.235 0.765 39 H 0.234 0.766 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.878 -2.398 24.374 24.564 hybrid contribution 0.408 -0.491 -0.430 0.770 sum 2.286 -2.889 23.944 24.226 Atomic orbital electron populations 1.21754 0.95318 1.01331 1.00861 1.21254 0.96089 0.99966 0.93246 0.91146 1.19571 0.96129 0.95915 0.92815 1.21046 1.35890 1.09718 0.88989 0.90806 1.25023 0.95526 0.96980 0.95930 1.69900 1.46804 1.39219 0.98097 0.86813 0.80654 0.84190 0.77823 1.20283 1.21366 1.19014 1.21835 0.99531 0.95483 0.83956 1.45158 1.59615 1.27878 1.02383 1.17844 0.90574 0.91234 0.86203 1.20523 1.07335 1.02717 0.90174 1.20626 0.94476 0.93692 0.98240 1.16819 1.08437 0.98088 0.80131 1.47448 1.44786 1.07273 1.10718 1.26164 0.94167 1.00020 0.83495 1.70589 1.26109 1.02261 1.28105 1.26076 0.96586 0.96144 0.92322 1.78331 1.24764 0.96796 1.12683 1.20508 0.96522 0.89472 0.92907 1.98401 1.72430 1.32759 1.98050 1.20466 1.05888 0.98410 0.96173 0.91043 0.93399 0.94850 0.96398 0.96728 0.92658 0.91934 0.91982 0.75836 0.84411 0.84510 0.76512 0.76650 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.88 37.16 0.33 -1.81 16 2 C -0.09 -1.43 2.37 -90.62 -0.22 -1.65 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.01 -0.14 3.52 -27.88 -0.10 -0.24 16 5 C -0.52 -13.66 8.96 -34.44 -0.31 -13.97 16 6 H 0.07 2.09 7.30 -52.49 -0.38 1.70 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 9 Si 0.88 20.82 27.47 -169.99 -4.67 16.15 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 13 C 0.12 1.53 4.30 -4.04 -0.02 1.51 16 14 N -0.73 -7.86 5.46 -58.60 -0.32 -8.18 16 15 C 0.25 2.61 6.65 -83.73 -0.56 2.06 16 16 C -0.18 -1.54 9.89 -39.40 -0.39 -1.93 16 17 C -0.05 -0.40 9.65 -39.44 -0.38 -0.78 16 18 C 0.06 0.64 6.29 -83.48 -0.53 0.11 16 19 N -0.32 -3.48 3.40 -11.75 -0.04 -3.52 16 20 C 0.26 2.34 12.32 -90.39 -1.11 1.23 16 21 N -0.54 -5.82 11.19 -15.75 -0.18 -5.99 16 22 C 0.19 1.97 13.03 -91.76 -1.20 0.78 16 23 N -0.30 -3.67 11.22 29.30 0.33 -3.34 16 24 C 0.04 0.42 6.33 -39.36 -0.25 0.17 16 25 Cl -0.05 -0.57 27.24 -51.86 -1.41 -1.98 16 26 C -0.19 -2.11 9.09 -39.38 -0.36 -2.47 16 27 H 0.07 1.31 6.95 -51.93 -0.36 0.95 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.42 7.18 -51.93 -0.37 0.05 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 31 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16 34 H 0.06 0.83 7.94 -51.93 -0.41 0.41 16 35 H 0.41 3.87 7.67 -40.82 -0.31 3.56 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.14 0.78 8.04 -52.49 -0.42 0.35 16 38 H 0.22 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.22 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.14 1.65 6.72 -52.48 -0.35 1.30 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -31.62 350.74 -10.48 -42.10 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.08 Total: 0.70 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -5.18 Total: -15.23 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.57 Total: -47.03 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.41 Total: -1.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.62 -10.48 -42.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876854171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.333 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds