Wall clock time and date at job start Tue Mar 31 2020 13:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47212 * 2 1 4 4 C 1.52998 * 109.47272 * 239.99733 * 2 1 3 5 5 C 1.50702 * 109.46822 * 64.99834 * 4 2 1 6 6 H 1.07997 * 120.00204 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99673 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00153 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00201 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46707 * 90.00275 * 9 7 5 11 11 H 1.48498 * 109.47378 * 210.00183 * 9 7 5 12 12 H 1.48495 * 109.47317 * 330.00534 * 9 7 5 13 13 C 1.53004 * 109.47156 * 119.99581 * 2 1 3 14 14 N 1.46499 * 109.46954 * 295.00365 * 13 2 1 15 15 C 1.39785 * 119.99397 * 180.02562 * 14 13 2 16 16 C 1.38948 * 119.99823 * 179.97438 * 15 14 13 17 17 C 1.38025 * 120.01193 * 179.97438 * 16 15 14 18 18 C 1.38835 * 120.01902 * 359.97438 * 17 16 15 19 19 N 1.40346 * 119.99100 * 179.97438 * 18 17 16 20 20 C 1.34674 * 126.84031 * 312.56453 * 19 18 17 21 21 N 1.30885 * 108.04265 * 179.89884 * 20 19 18 22 22 C 1.33239 * 109.83671 * 0.37825 * 21 20 19 23 23 N 1.30774 * 108.99167 * 359.76746 * 22 21 20 24 24 C 1.38940 * 120.00989 * 359.97438 * 18 17 16 25 25 Cl 1.73600 * 120.00636 * 180.02562 * 24 18 17 26 26 C 1.38145 * 119.98218 * 0.02562 * 24 18 17 27 27 H 1.08996 * 109.47112 * 60.00051 * 1 2 3 28 28 H 1.09000 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47136 * 300.00059 * 1 2 3 30 30 H 1.08997 * 109.47377 * 184.99798 * 4 2 1 31 31 H 1.09000 * 109.47256 * 305.00430 * 4 2 1 32 32 H 0.96995 * 120.00496 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47253 * 174.99643 * 13 2 1 34 34 H 1.08998 * 109.46990 * 55.00075 * 13 2 1 35 35 H 0.96996 * 120.00670 * 359.97438 * 14 13 2 36 36 H 1.08001 * 119.99404 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.98611 * 179.70033 * 17 16 15 38 38 H 1.08000 * 125.98247 * 0.03539 * 20 19 18 39 39 H 1.08002 * 125.49972 * 179.75831 * 22 21 20 40 40 H 1.08004 * 120.01020 * 180.02562 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0799 0.9740 -2.3757 7 6 1.9923 -0.4024 -3.7282 8 7 1.6449 0.2770 -4.7994 9 14 2.9628 -1.9890 -3.9027 10 1 2.0235 -3.1334 -4.0188 11 1 3.8109 -1.9193 -5.1197 12 1 3.8252 -2.1756 -2.7084 13 6 2.0400 -0.7212 1.2493 14 7 1.6524 0.0355 2.4424 15 6 2.0092 -0.4296 3.7114 16 6 1.6420 0.2883 4.8430 17 6 1.9938 -0.1710 6.0961 18 6 2.7141 -1.3506 6.2267 19 7 3.0719 -1.8168 7.5012 20 6 3.6269 -1.0996 8.4968 21 7 3.8042 -1.8962 9.5201 22 6 3.3851 -3.1237 9.2155 23 7 2.9282 -3.1255 7.9901 24 6 3.0808 -2.0697 5.0958 25 17 3.9809 -3.5451 5.2591 26 6 2.7289 -1.6103 3.8414 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.1263 -0.7995 -1.2056 31 1 1.6054 -1.7198 -1.2951 32 1 1.8915 -0.0463 -5.6800 33 1 3.1263 -0.7995 1.2057 34 1 1.6054 -1.7197 1.2953 35 1 1.1488 0.8595 2.3518 36 1 1.0813 1.2058 4.7419 37 1 1.7124 0.3899 6.9752 38 1 3.8794 -0.0502 8.4586 39 1 3.4175 -3.9790 9.8741 40 1 3.0133 -2.1691 2.9620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876854171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:23 Heat of formation + Delta-G solvation = 89.061459 kcal Electronic energy + Delta-G solvation = -23151.281225 eV Core-core repulsion = 19606.821836 eV Total energy + Delta-G solvation = -3544.459388 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.110 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.13561 -40.69406 -38.43464 -37.47330 -36.04679 -34.54493 -33.41552 -32.31091 -31.83222 -30.01945 -28.84100 -27.21826 -24.89191 -24.40470 -23.60294 -22.53165 -22.08995 -20.88194 -19.34054 -18.99813 -18.33357 -17.39098 -16.56328 -16.48456 -16.04028 -16.02002 -15.73969 -15.19571 -15.07854 -14.97102 -14.87448 -14.75302 -14.21528 -13.97109 -13.84729 -13.46289 -13.19516 -12.87436 -12.84825 -12.55200 -12.48988 -12.22607 -12.05226 -11.74507 -11.69021 -11.47667 -11.33849 -11.11415 -11.05097 -10.77784 -10.74295 -10.52655 -9.95232 -8.42815 -8.26543 -6.28798 -0.09522 0.14365 0.86601 0.99664 1.36385 1.38476 1.40033 1.48625 1.99661 2.36875 2.40012 2.53966 3.09438 3.48745 3.59087 3.86893 3.97566 4.01646 4.09248 4.14266 4.29878 4.33154 4.34049 4.60824 4.72623 4.75222 4.85201 4.88336 5.03338 5.05807 5.11371 5.24121 5.33404 5.36828 5.42445 5.49385 5.52365 5.65564 5.70200 6.01695 6.17963 6.32576 6.75033 6.79462 7.09087 7.35064 8.89722 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.025668 B = 0.002467 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.583125 B =11349.136736 C =12211.357427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 H 0.065 0.935 4 C -0.008 4.008 5 C -0.516 4.516 6 H 0.039 0.961 7 C 0.002 3.998 8 N -0.953 5.953 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.244 1.244 13 C 0.131 3.869 14 N -0.723 5.723 15 C 0.243 3.757 16 C -0.169 4.169 17 C -0.039 4.039 18 C 0.053 3.947 19 N -0.327 5.327 20 C 0.264 3.736 21 N -0.566 5.566 22 C 0.191 3.809 23 N -0.338 5.338 24 C 0.017 3.983 25 Cl -0.063 7.063 26 C -0.197 4.197 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.264 0.736 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.413 0.587 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.257 0.743 39 H 0.242 0.758 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -1.420 27.471 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.098 4.098 3 H 0.083 0.917 4 C -0.046 4.046 5 C -0.554 4.554 6 H 0.058 0.942 7 C -0.195 4.195 8 N -0.594 5.594 9 Si 0.767 3.233 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.168 1.168 13 C 0.006 3.994 14 N -0.350 5.350 15 C 0.134 3.866 16 C -0.192 4.192 17 C -0.060 4.060 18 C -0.042 4.042 19 N -0.112 5.112 20 C -0.030 4.030 21 N -0.293 5.293 22 C -0.112 4.112 23 N -0.164 5.164 24 C -0.012 4.012 25 Cl -0.034 7.034 26 C -0.221 4.221 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.251 0.749 36 H 0.185 0.815 37 H 0.187 0.813 38 H 0.273 0.727 39 H 0.257 0.743 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.054 -2.210 27.044 27.212 hybrid contribution 0.308 -0.443 -1.160 1.279 sum 2.362 -2.653 25.884 26.127 Atomic orbital electron populations 1.21678 0.94781 1.01355 1.00912 1.21055 0.96463 0.99427 0.92857 0.91660 1.19546 0.96310 0.95822 0.92928 1.21423 1.34243 1.08757 0.91013 0.94243 1.25961 0.97039 1.00730 0.95722 1.70059 1.49087 1.41532 0.98713 0.85771 0.79432 0.79786 0.78337 1.19562 1.21578 1.16754 1.21451 0.99323 0.95198 0.83408 1.44878 1.60265 1.28075 1.01786 1.17934 0.90903 0.91249 0.86475 1.20853 1.06095 1.03009 0.89264 1.20963 0.92969 0.92679 0.99376 1.17113 1.08590 0.98677 0.79771 1.47503 1.45451 1.07168 1.11068 1.26965 0.92389 1.01246 0.82422 1.70628 1.27003 1.02677 1.29022 1.26638 0.95466 0.96910 0.92144 1.78283 1.26346 0.98079 1.13651 1.20654 0.97491 0.89414 0.93670 1.98387 1.72956 1.33938 1.98101 1.20460 1.06657 0.99097 0.95875 0.94445 0.93346 0.91318 0.96135 0.96278 0.92753 0.92015 0.91838 0.74892 0.81474 0.81325 0.72693 0.74253 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 8.88 71.98 0.64 -3.33 16 2 C -0.08 -2.53 2.37 -10.79 -0.03 -2.55 16 3 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.01 -0.34 3.52 29.85 0.10 -0.24 16 5 C -0.52 -27.74 8.96 25.60 0.23 -27.52 16 6 H 0.04 2.33 7.30 -2.91 -0.02 2.31 16 7 C 0.00 0.10 5.47 84.65 0.46 0.57 16 8 N -0.95 -58.34 13.96 21.45 0.30 -58.04 16 9 Si 0.94 42.90 27.47 68.60 1.88 44.78 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 13 C 0.13 3.21 4.30 86.38 0.37 3.58 16 14 N -0.72 -13.65 5.46 -339.31 -1.85 -15.50 16 15 C 0.24 4.37 6.65 38.20 0.25 4.63 16 16 C -0.17 -2.14 9.89 22.39 0.22 -1.92 16 17 C -0.04 -0.49 9.65 22.36 0.22 -0.27 16 18 C 0.05 1.00 6.29 38.09 0.24 1.24 16 19 N -0.33 -6.53 3.40 -191.08 -0.65 -7.18 16 20 C 0.26 4.12 12.32 180.27 2.22 6.34 16 21 N -0.57 -11.03 11.19 -203.74 -2.28 -13.31 16 22 C 0.19 3.69 13.03 180.75 2.35 6.04 16 23 N -0.34 -7.91 11.22 -61.21 -0.69 -8.60 16 24 C 0.02 0.38 6.33 22.42 0.14 0.53 16 25 Cl -0.06 -1.56 27.24 -2.72 -0.07 -1.63 16 26 C -0.20 -4.20 9.09 22.40 0.20 -3.99 16 27 H 0.04 1.38 6.95 -2.39 -0.02 1.36 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.59 7.18 -2.38 -0.02 1.57 16 30 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 31 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.06 1.54 7.95 -2.39 -0.02 1.52 16 34 H 0.06 1.56 7.94 -2.39 -0.02 1.54 16 35 H 0.41 6.50 7.67 -92.71 -0.71 5.79 16 36 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.17 1.04 8.04 -2.91 -0.02 1.01 16 38 H 0.26 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.24 2.88 8.06 -2.91 -0.02 2.86 16 40 H 0.14 3.02 6.72 -2.91 -0.02 3.00 16 Total: -1.00 -71.06 350.74 4.58 -66.48 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.30 Total: 9.90 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 7.63 Total: -16.89 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -5.17 Total: -102.64 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.78 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.63 kcal Total: -71.06 4.58 -66.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876854171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.542 kcal (2) G-P(sol) polarization free energy of solvation -71.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds