Wall clock time and date at job start Tue Mar 31 2020 13:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46896 * 109.47579 * 2 1 4 4 C 1.46899 * 110.99667 * 288.04863 * 3 2 1 5 5 C 1.50707 * 109.47352 * 160.35976 * 4 3 2 6 6 H 1.08001 * 119.99724 * 4.89854 * 5 4 3 7 7 C 1.37875 * 120.00329 * 184.89795 * 5 4 3 8 8 N 1.31509 * 120.00043 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00019 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46972 * 89.99733 * 9 7 5 11 11 H 1.48494 * 109.47295 * 210.00253 * 9 7 5 12 12 H 1.48505 * 109.46977 * 330.00385 * 9 7 5 13 13 C 1.46904 * 111.00473 * 164.09372 * 3 2 1 14 14 C 1.50702 * 109.46769 * 293.95440 * 13 3 2 15 15 C 1.33681 * 125.88555 * 90.00112 * 14 13 3 16 16 N 1.31343 * 115.84725 * 179.97438 * 15 14 13 17 17 C 1.30232 * 117.03125 * 0.02562 * 16 15 14 18 18 C 1.47854 * 125.47182 * 180.02562 * 17 16 15 19 19 C 1.39563 * 120.11787 * 0.02562 * 18 17 16 20 20 C 1.37909 * 119.88314 * 180.02562 * 19 18 17 21 21 C 1.38596 * 120.11491 * 0.02562 * 20 19 18 22 22 F 1.35101 * 119.87904 * 179.97438 * 21 20 19 23 23 C 1.38583 * 120.23573 * 0.23580 * 21 20 19 24 24 C 1.37919 * 120.11305 * 359.49075 * 23 21 20 25 25 S 1.76171 * 109.05339 * 0.26174 * 17 16 15 26 26 H 1.08995 * 109.47284 * 299.47940 * 1 2 3 27 27 H 1.09001 * 109.47010 * 59.47907 * 1 2 3 28 28 H 1.08995 * 109.47357 * 179.47663 * 1 2 3 29 29 H 1.09003 * 109.47201 * 239.99490 * 2 1 3 30 30 H 1.09004 * 109.46821 * 120.00136 * 2 1 3 31 31 H 1.09002 * 109.47270 * 280.35921 * 4 3 2 32 32 H 1.08997 * 109.47370 * 40.36008 * 4 3 2 33 33 H 0.97001 * 120.00086 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.46731 * 173.95106 * 13 3 2 35 35 H 1.08997 * 109.46665 * 53.94987 * 13 3 2 36 36 H 1.07998 * 122.07763 * 359.97438 * 15 14 13 37 37 H 1.08001 * 120.05585 * 359.97438 * 19 18 17 38 38 H 1.07993 * 119.94457 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.94277 * 179.74275 * 23 21 20 40 40 H 1.08003 * 120.05519 * 180.27843 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7946 2.0228 -1.3040 5 6 1.8461 3.5207 -1.1461 6 1 2.1059 3.9544 -0.1917 7 6 1.5617 4.3373 -2.2199 8 7 1.6071 5.6444 -2.0822 9 14 1.1130 3.5872 -3.8708 10 1 -0.3577 3.3959 -3.9443 11 1 1.5494 4.4949 -4.9620 12 1 1.7908 2.2741 -4.0184 13 6 3.4387 1.4416 0.3759 14 6 3.5963 1.0056 1.8098 15 6 3.8055 -0.2462 2.2297 16 7 3.9143 -0.4036 3.5291 17 6 3.8077 0.6651 4.2658 18 6 3.9004 0.7030 5.7409 19 6 4.1200 -0.4732 6.4593 20 6 4.2050 -0.4322 7.8352 21 6 4.0723 0.7741 8.5045 22 9 4.1559 0.8087 9.8525 23 6 3.8487 1.9442 7.7964 24 6 3.7676 1.9151 6.4199 25 16 3.5287 2.0571 3.2227 26 1 -0.3633 0.5057 0.8946 27 1 -0.3633 0.5219 -0.8853 28 1 -0.3634 -1.0276 -0.0094 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.5683 1.7043 -2.0027 32 1 0.8167 1.7313 -1.6871 33 1 1.4073 6.2190 -2.8378 34 1 3.8036 2.4627 0.2643 35 1 4.0126 0.7779 -0.2708 36 1 3.8803 -1.0765 1.5432 37 1 4.2223 -1.4139 5.9387 38 1 4.3745 -1.3418 8.3921 39 1 3.7419 2.8810 8.3230 40 1 3.5979 2.8283 5.8686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140096005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:52 Heat of formation + Delta-G solvation = 29.723804 kcal Electronic energy + Delta-G solvation = -23110.023171 eV Core-core repulsion = 19545.114454 eV Total energy + Delta-G solvation = -3564.908717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.18714 -39.84356 -38.85238 -37.15382 -32.78450 -32.34516 -31.53002 -30.89105 -29.69905 -27.26927 -25.65025 -23.93130 -23.18865 -22.47720 -22.29416 -19.98210 -19.43330 -17.99706 -17.79259 -16.93125 -16.24007 -16.22307 -15.88096 -15.30723 -15.07982 -14.55614 -14.33253 -14.19119 -13.90926 -13.88385 -13.62167 -13.47344 -13.03983 -12.59592 -12.56519 -12.41002 -12.22315 -11.70841 -11.52215 -11.41371 -11.33197 -10.91908 -10.82257 -10.54204 -10.23854 -9.95467 -9.69164 -9.58967 -9.47040 -9.37375 -9.07606 -8.62257 -8.13062 -7.52848 -6.11209 -4.08832 0.13042 0.92204 1.28377 1.38409 1.87892 2.83541 3.23126 3.31304 3.32049 3.45014 3.87220 3.94823 4.35908 4.44345 4.54202 4.66671 4.88748 4.93735 5.10339 5.15195 5.21464 5.39361 5.49751 5.55578 5.63038 5.67682 5.78517 5.85462 5.91131 5.93982 6.03976 6.10698 6.20669 6.32131 6.37793 6.50676 6.62968 6.72202 6.80298 7.52969 7.72378 7.78109 7.87075 8.57502 8.96974 9.50193 11.01874 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.002702 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.232481 B =10359.795823 C =11027.591453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 N -0.521 5.521 4 C 0.162 3.838 5 C -0.510 4.510 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.873 3.127 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.129 3.871 14 C -0.167 4.167 15 C 0.019 3.981 16 N -0.457 5.457 17 C 0.071 3.929 18 C -0.021 4.021 19 C -0.050 4.050 20 C -0.154 4.154 21 C 0.104 3.896 22 F -0.139 7.139 23 C -0.149 4.149 24 C -0.073 4.073 25 S 0.138 5.862 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.024 0.976 30 H 0.065 0.935 31 H -0.010 1.010 32 H 0.031 0.969 33 H 0.264 0.736 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.170 0.830 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 -11.777 16.394 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 N -0.246 5.246 4 C 0.036 3.964 5 C -0.548 4.548 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.001 4.001 14 C -0.289 4.289 15 C -0.133 4.133 16 N -0.171 5.171 17 C -0.203 4.203 18 C -0.025 4.025 19 C -0.071 4.071 20 C -0.173 4.173 21 C 0.084 3.916 22 F -0.117 7.117 23 C -0.168 4.168 24 C -0.093 4.093 25 S 0.395 5.605 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.008 0.992 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.187 0.813 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.970 -10.735 17.013 20.722 hybrid contribution 0.162 -1.377 -2.031 2.459 sum 5.132 -12.112 14.982 19.937 Atomic orbital electron populations 1.21733 0.95250 1.00195 1.02898 1.22153 0.96317 0.90535 0.99614 1.62018 1.14405 1.14776 1.33393 1.20245 0.95679 0.96004 0.84462 1.20998 1.46959 0.88087 0.98752 0.90228 1.24884 0.95102 0.94705 0.98513 1.69883 1.49464 1.02842 1.31491 0.86902 0.79268 0.79460 0.84363 1.20116 1.21143 1.19335 1.20473 0.90969 1.02596 0.86077 1.26146 1.06115 0.95798 1.00870 1.21454 1.04897 0.96403 0.90587 1.66460 1.15536 1.29974 1.05126 1.25588 1.06357 0.91674 0.96649 1.17878 1.02745 0.94141 0.87741 1.21133 0.95158 0.98406 0.92417 1.21114 1.04151 0.97175 0.94866 1.17862 1.01932 0.94844 0.76964 1.91509 1.93583 1.97321 1.29327 1.21011 1.03655 0.97880 0.94212 1.21083 0.97426 0.97246 0.93550 1.85090 1.65650 1.12001 0.97756 0.92162 0.92315 0.93348 0.95770 0.91623 0.99200 0.95100 0.92602 0.88023 0.93387 0.81270 0.83729 0.84219 0.84024 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.98 37.16 0.37 -1.90 16 2 C 0.04 0.70 5.55 -3.83 -0.02 0.68 16 3 N -0.52 -10.27 4.37 -237.51 -1.04 -11.31 16 4 C 0.16 3.72 3.65 -4.97 -0.02 3.71 16 5 C -0.51 -13.89 9.17 -34.44 -0.32 -14.20 16 6 H 0.08 2.37 7.89 -52.49 -0.41 1.95 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 9 Si 0.87 20.87 27.37 -169.99 -4.65 16.21 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.17 6.69 56.52 0.38 -5.79 16 13 C 0.13 2.26 5.32 -4.97 -0.03 2.24 16 14 C -0.17 -2.60 5.55 -35.90 -0.20 -2.79 16 15 C 0.02 0.27 9.52 -19.36 -0.18 0.09 16 16 N -0.46 -6.56 10.14 -11.36 -0.12 -6.67 16 17 C 0.07 0.96 7.35 -14.30 -0.11 0.86 16 18 C -0.02 -0.24 5.87 -104.97 -0.62 -0.86 16 19 C -0.05 -0.50 9.68 -39.21 -0.38 -0.88 16 20 C -0.15 -1.35 10.01 -39.57 -0.40 -1.75 16 21 C 0.10 0.98 7.30 -39.32 -0.29 0.69 16 22 F -0.14 -1.37 17.26 2.25 0.04 -1.33 16 23 C -0.15 -1.32 10.01 -39.57 -0.40 -1.72 16 24 C -0.07 -0.72 9.60 -39.20 -0.38 -1.10 16 25 S 0.14 2.00 22.39 -107.50 -2.41 -0.41 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.00 6.52 -51.93 -0.34 0.67 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 30 H 0.07 1.00 5.44 -51.93 -0.28 0.71 16 31 H -0.01 -0.22 7.40 -51.93 -0.38 -0.61 16 32 H 0.03 0.72 5.40 -51.93 -0.28 0.44 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.10 1.98 7.32 -51.93 -0.38 1.60 16 35 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 36 H 0.17 2.08 7.84 -52.49 -0.41 1.67 16 37 H 0.14 1.38 7.82 -52.49 -0.41 0.97 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.14 1.23 7.30 -52.48 -0.38 0.85 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -30.03 350.23 -10.15 -40.18 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.97 Total: -0.84 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -3.05 Total: -15.08 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.38 Total: -44.02 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.65 Total: 16.21 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.41 Total: -0.41 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.03 -10.15 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140096005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.902 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds