Wall clock time and date at job start Tue Mar 31 2020 13:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46896 * 109.47579 * 2 1 4 4 C 1.46899 * 110.99667 * 288.04863 * 3 2 1 5 5 C 1.50707 * 109.47352 * 160.35976 * 4 3 2 6 6 H 1.08001 * 119.99724 * 4.89854 * 5 4 3 7 7 C 1.37875 * 120.00329 * 184.89795 * 5 4 3 8 8 N 1.31509 * 120.00043 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00019 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46972 * 89.99733 * 9 7 5 11 11 H 1.48494 * 109.47295 * 210.00253 * 9 7 5 12 12 H 1.48505 * 109.46977 * 330.00385 * 9 7 5 13 13 C 1.46904 * 111.00473 * 164.09372 * 3 2 1 14 14 C 1.50702 * 109.46769 * 293.95440 * 13 3 2 15 15 C 1.33681 * 125.88555 * 90.00112 * 14 13 3 16 16 N 1.31343 * 115.84725 * 179.97438 * 15 14 13 17 17 C 1.30232 * 117.03125 * 0.02562 * 16 15 14 18 18 C 1.47854 * 125.47182 * 180.02562 * 17 16 15 19 19 C 1.39563 * 120.11787 * 0.02562 * 18 17 16 20 20 C 1.37909 * 119.88314 * 180.02562 * 19 18 17 21 21 C 1.38596 * 120.11491 * 0.02562 * 20 19 18 22 22 F 1.35101 * 119.87904 * 179.97438 * 21 20 19 23 23 C 1.38583 * 120.23573 * 0.23580 * 21 20 19 24 24 C 1.37919 * 120.11305 * 359.49075 * 23 21 20 25 25 S 1.76171 * 109.05339 * 0.26174 * 17 16 15 26 26 H 1.08995 * 109.47284 * 299.47940 * 1 2 3 27 27 H 1.09001 * 109.47010 * 59.47907 * 1 2 3 28 28 H 1.08995 * 109.47357 * 179.47663 * 1 2 3 29 29 H 1.09003 * 109.47201 * 239.99490 * 2 1 3 30 30 H 1.09004 * 109.46821 * 120.00136 * 2 1 3 31 31 H 1.09002 * 109.47270 * 280.35921 * 4 3 2 32 32 H 1.08997 * 109.47370 * 40.36008 * 4 3 2 33 33 H 0.97001 * 120.00086 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.46731 * 173.95106 * 13 3 2 35 35 H 1.08997 * 109.46665 * 53.94987 * 13 3 2 36 36 H 1.07998 * 122.07763 * 359.97438 * 15 14 13 37 37 H 1.08001 * 120.05585 * 359.97438 * 19 18 17 38 38 H 1.07993 * 119.94457 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.94277 * 179.74275 * 23 21 20 40 40 H 1.08003 * 120.05519 * 180.27843 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7946 2.0228 -1.3040 5 6 1.8461 3.5207 -1.1461 6 1 2.1059 3.9544 -0.1917 7 6 1.5617 4.3373 -2.2199 8 7 1.6071 5.6444 -2.0822 9 14 1.1130 3.5872 -3.8708 10 1 -0.3577 3.3959 -3.9443 11 1 1.5494 4.4949 -4.9620 12 1 1.7908 2.2741 -4.0184 13 6 3.4387 1.4416 0.3759 14 6 3.5963 1.0056 1.8098 15 6 3.8055 -0.2462 2.2297 16 7 3.9143 -0.4036 3.5291 17 6 3.8077 0.6651 4.2658 18 6 3.9004 0.7030 5.7409 19 6 4.1200 -0.4732 6.4593 20 6 4.2050 -0.4322 7.8352 21 6 4.0723 0.7741 8.5045 22 9 4.1559 0.8087 9.8525 23 6 3.8487 1.9442 7.7964 24 6 3.7676 1.9151 6.4199 25 16 3.5287 2.0571 3.2227 26 1 -0.3633 0.5057 0.8946 27 1 -0.3633 0.5219 -0.8853 28 1 -0.3634 -1.0276 -0.0094 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.5683 1.7043 -2.0027 32 1 0.8167 1.7313 -1.6871 33 1 1.4073 6.2190 -2.8378 34 1 3.8036 2.4627 0.2643 35 1 4.0126 0.7779 -0.2708 36 1 3.8803 -1.0765 1.5432 37 1 4.2223 -1.4139 5.9387 38 1 4.3745 -1.3418 8.3921 39 1 3.7419 2.8810 8.3230 40 1 3.5979 2.8283 5.8686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140096005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:52 Heat of formation + Delta-G solvation = 12.495304 kcal Electronic energy + Delta-G solvation = -23110.770255 eV Core-core repulsion = 19545.114454 eV Total energy + Delta-G solvation = -3565.655801 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.95078 -40.87412 -39.77256 -38.58838 -34.77066 -33.49999 -32.27526 -32.06883 -31.18769 -28.82282 -26.85874 -25.06327 -24.17563 -24.02728 -23.25639 -21.52632 -20.42968 -19.11339 -18.91932 -18.63562 -17.23446 -17.07835 -16.90616 -16.63539 -16.30980 -15.91782 -15.72406 -15.26596 -15.13218 -15.00182 -14.60426 -14.56182 -14.41610 -14.10927 -13.71758 -13.49907 -13.36571 -13.22904 -12.96935 -12.73101 -12.55106 -12.27596 -12.14884 -11.99006 -11.90988 -11.60736 -11.50622 -10.76926 -10.72421 -10.61210 -10.23900 -10.18445 -9.18117 -8.99682 -8.27033 -6.29734 -0.85573 0.19459 0.25227 0.35089 0.75947 1.35525 1.36217 1.46582 1.78915 2.34628 2.61521 2.90512 3.05339 3.18254 3.24862 3.71601 3.82994 3.87005 3.99620 4.13436 4.18824 4.19054 4.32306 4.39356 4.58291 4.67090 4.71656 4.78551 4.87590 4.90358 4.94044 5.01421 5.04217 5.05397 5.15955 5.21381 5.33369 5.34667 5.58228 5.76499 5.98186 6.30783 6.60544 6.64498 6.76004 7.33415 8.89675 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.002702 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.232481 B =10359.795823 C =11027.591453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.043 3.957 3 N -0.540 5.540 4 C 0.173 3.827 5 C -0.512 4.512 6 H 0.036 0.964 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.943 3.057 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.249 1.249 13 C 0.137 3.863 14 C -0.193 4.193 15 C 0.035 3.965 16 N -0.471 5.471 17 C 0.094 3.906 18 C -0.047 4.047 19 C -0.047 4.047 20 C -0.148 4.148 21 C 0.103 3.897 22 F -0.140 7.140 23 C -0.147 4.147 24 C -0.073 4.073 25 S 0.110 5.890 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.081 0.919 31 H -0.007 1.007 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.192 0.808 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 -14.536 17.016 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 N -0.265 5.265 4 C 0.046 3.954 5 C -0.550 4.550 6 H 0.054 0.946 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.172 1.172 13 C 0.008 3.992 14 C -0.315 4.315 15 C -0.117 4.117 16 N -0.185 5.185 17 C -0.180 4.180 18 C -0.051 4.051 19 C -0.069 4.069 20 C -0.167 4.167 21 C 0.083 3.917 22 F -0.119 7.119 23 C -0.165 4.165 24 C -0.094 4.094 25 S 0.367 5.633 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.011 0.989 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.209 0.791 37 H 0.168 0.832 38 H 0.182 0.818 39 H 0.180 0.820 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.938 -13.517 17.645 22.769 hybrid contribution 0.224 -0.514 -1.945 2.025 sum 5.162 -14.031 15.700 21.680 Atomic orbital electron populations 1.21734 0.94794 1.01858 1.01480 1.22235 0.96659 0.88634 1.00933 1.61876 1.16114 1.17075 1.31455 1.19972 0.95806 0.93278 0.86357 1.21236 1.45979 0.90792 0.96991 0.94596 1.25808 0.95145 0.95000 1.02892 1.70047 1.51309 1.04610 1.32902 0.85773 0.79400 0.79261 0.78862 1.19195 1.20955 1.17242 1.20255 0.89929 1.01153 0.87908 1.25838 1.09305 0.96510 0.99811 1.21736 1.02803 0.96304 0.90897 1.66554 1.16869 1.29906 1.05128 1.25988 1.03820 0.90705 0.97477 1.18018 1.05009 0.95434 0.86653 1.21212 0.94741 0.98019 0.92913 1.21329 1.02978 0.97980 0.94386 1.18037 1.01497 0.95272 0.76937 1.91513 1.93534 1.97346 1.29462 1.21220 1.02740 0.98803 0.93752 1.21176 0.97134 0.96990 0.94088 1.85167 1.66470 1.13181 0.98453 0.93391 0.93867 0.90143 0.94468 0.90037 0.98946 0.94673 0.92515 0.91341 0.91741 0.79123 0.83234 0.81798 0.81994 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.98 71.98 0.72 -3.49 16 2 C 0.04 1.33 5.55 86.30 0.48 1.81 16 3 N -0.54 -21.26 4.37 -905.36 -3.96 -25.21 16 4 C 0.17 7.92 3.65 85.56 0.31 8.23 16 5 C -0.51 -28.85 9.17 25.60 0.23 -28.62 16 6 H 0.04 2.28 7.89 -2.91 -0.02 2.25 16 7 C 0.01 0.50 5.47 84.65 0.46 0.97 16 8 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 9 Si 0.94 43.07 27.37 68.60 1.88 44.95 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.25 -10.48 6.69 99.48 0.67 -9.81 16 13 C 0.14 4.88 5.32 85.56 0.46 5.34 16 14 C -0.19 -5.98 5.55 24.65 0.14 -5.84 16 15 C 0.04 0.94 9.52 83.73 0.80 1.74 16 16 N -0.47 -12.83 10.14 -189.86 -1.93 -14.76 16 17 C 0.09 2.48 7.35 87.48 0.64 3.12 16 18 C -0.05 -1.02 5.87 -20.09 -0.12 -1.14 16 19 C -0.05 -0.86 9.68 22.51 0.22 -0.64 16 20 C -0.15 -2.22 10.01 22.28 0.22 -1.99 16 21 C 0.10 1.69 7.30 22.44 0.16 1.86 16 22 F -0.14 -2.43 17.26 44.97 0.78 -1.65 16 23 C -0.15 -2.32 10.01 22.28 0.22 -2.10 16 24 C -0.07 -1.37 9.60 22.51 0.22 -1.16 16 25 S 0.11 3.26 22.39 -56.49 -1.26 2.00 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.04 1.41 6.52 -2.39 -0.02 1.39 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 1.08 8.05 -2.39 -0.02 1.06 16 30 H 0.08 2.28 5.44 -2.39 -0.01 2.26 16 31 H -0.01 -0.32 7.40 -2.39 -0.02 -0.34 16 32 H 0.04 1.59 5.40 -2.39 -0.01 1.58 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.07 2.84 7.32 -2.39 -0.02 2.83 16 35 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 36 H 0.19 4.18 7.84 -2.91 -0.02 4.16 16 37 H 0.15 2.54 7.82 -2.91 -0.02 2.51 16 38 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.14 2.48 7.30 -2.91 -0.02 2.46 16 Total: -1.00 -66.30 350.23 1.99 -64.31 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.02 Total: 10.58 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 5.16 Total: -21.91 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -5.58 Total: -98.27 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.26 Total: 2.00 kcal Total: -66.30 1.99 -64.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140096005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.803 kcal (2) G-P(sol) polarization free energy of solvation -66.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds