Wall clock time and date at job start Tue Mar 31 2020 12:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33087 * 1 3 3 C 1.50700 * 120.00066 * 2 1 4 4 C 1.46949 * 119.99747 * 179.97438 * 2 1 3 5 5 O 1.21535 * 120.00087 * 0.02562 * 4 2 1 6 6 O 1.34798 * 119.99900 * 179.97438 * 4 2 1 7 7 C 1.45199 * 116.99914 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47113 * 180.02562 * 7 6 4 9 9 N 1.46503 * 109.47550 * 64.99868 * 8 7 6 10 10 C 1.39669 * 120.00014 * 180.02562 * 9 8 7 11 11 C 1.38167 * 119.99285 * 352.78178 * 10 9 8 12 12 C 1.41134 * 119.50435 * 179.80118 * 11 10 9 13 13 C 1.40357 * 120.25396 * 180.23257 * 12 11 10 14 14 H 1.07992 * 119.99960 * 203.33060 * 13 12 11 15 15 C 1.46527 * 119.99869 * 23.32256 * 13 12 11 16 16 N 1.29516 * 119.99886 * 17.06055 * 15 13 12 17 17 Si 1.86797 * 120.00095 * 197.05757 * 15 13 12 18 18 H 1.48498 * 109.46962 * 90.00424 * 17 15 13 19 19 H 1.48498 * 109.47453 * 210.00473 * 17 15 13 20 20 H 1.48504 * 109.46991 * 330.00440 * 17 15 13 21 21 C 1.41338 * 119.49198 * 0.47265 * 12 11 10 22 22 C 1.36482 * 119.96578 * 359.75708 * 21 12 11 23 23 C 1.38660 * 120.50216 * 0.02562 * 22 21 12 24 24 N 1.48022 * 119.74254 * 179.97438 * 23 22 21 25 25 O 1.31705 * 119.99796 * 141.79840 * 24 23 22 26 26 O 1.31691 * 119.99976 * 321.79820 * 24 23 22 27 27 H 1.08006 * 119.99659 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.00465 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47192 * 270.00023 * 3 2 1 30 30 H 1.09003 * 109.47297 * 29.99986 * 3 2 1 31 31 H 1.08999 * 109.47165 * 149.99664 * 3 2 1 32 32 H 1.08994 * 109.47213 * 60.00622 * 7 6 4 33 33 H 1.09003 * 109.47094 * 300.00101 * 7 6 4 34 34 H 1.09009 * 109.46947 * 305.00050 * 8 7 6 35 35 H 1.08996 * 109.47212 * 185.00156 * 8 7 6 36 36 H 0.97002 * 119.99555 * 359.97438 * 9 8 7 37 37 H 1.07997 * 120.24244 * 0.02585 * 11 10 9 38 38 H 0.97000 * 119.99857 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.01486 * 179.73122 * 21 12 11 40 40 H 1.08002 * 119.75288 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 6 2.0844 1.3051 0.0000 4 6 2.0656 -1.2726 0.0006 5 8 1.4579 -2.3251 0.0006 6 8 3.4135 -1.2727 0.0000 7 6 4.0727 -2.5664 0.0001 8 6 5.5895 -2.3660 0.0001 9 7 5.9973 -1.7233 1.2519 10 6 7.3444 -1.4361 1.4829 11 6 8.3081 -1.8895 0.6027 12 6 9.6660 -1.5897 0.8438 13 6 10.6575 -2.0383 -0.0426 14 1 11.6757 -2.1519 0.2988 15 6 10.3109 -2.3527 -1.4311 16 7 9.2003 -1.9176 -1.9358 17 14 11.4709 -3.3809 -2.4735 18 1 11.1285 -4.8180 -2.3239 19 1 11.3374 -2.9860 -3.8988 20 1 12.8691 -3.1560 -2.0264 21 6 10.0202 -0.8386 1.9875 22 6 9.0513 -0.4053 2.8455 23 6 7.7171 -0.6965 2.6054 24 7 6.6801 -0.2186 3.5474 25 8 5.5211 0.2079 3.0899 26 8 6.9165 -0.2200 4.8429 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 2.2661 1.6197 -1.0276 30 1 1.4953 2.0648 0.5138 31 1 3.0368 1.1748 0.5139 32 1 3.7795 -3.1236 -0.8897 33 1 3.7801 -3.1233 0.8903 34 1 5.8725 -1.7340 -0.8418 35 1 6.0838 -3.3333 -0.0895 36 1 5.3315 -1.4966 1.9199 37 1 8.0240 -2.4660 -0.2652 38 1 8.9710 -2.1254 -2.8551 39 1 11.0572 -0.6081 2.1826 40 1 9.3259 0.1680 3.7186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168073617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:38 Heat of formation + Delta-G solvation = -39.491948 kcal Electronic energy + Delta-G solvation = -26508.272943 eV Core-core repulsion = 22485.237145 eV Total energy + Delta-G solvation = -4023.035798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39866 -38.89163 -37.04024 -36.77713 -35.19082 -34.73956 -34.13107 -32.96459 -30.93747 -30.15261 -27.52575 -27.25732 -26.89548 -24.55336 -23.75838 -22.58164 -20.82662 -20.47733 -19.53127 -18.30718 -17.36907 -17.22122 -16.81108 -16.50042 -16.44405 -15.86507 -15.55377 -14.98435 -14.33526 -14.14134 -13.84703 -13.66643 -13.47948 -13.32092 -13.17036 -12.94821 -12.58687 -12.51657 -12.31448 -12.00054 -11.75304 -11.61962 -11.57516 -11.37081 -11.06184 -10.63966 -10.56338 -10.50020 -10.18693 -10.06178 -9.92671 -9.69592 -9.59861 -9.53563 -9.33684 -8.20196 -7.60757 -6.83439 -5.07565 0.81323 1.03674 2.34036 2.66302 2.67624 2.71117 2.72925 2.75304 2.84012 2.89323 3.36556 3.88934 3.97805 4.57054 4.78054 4.89825 5.05733 5.15339 5.25667 5.30083 5.52214 5.65265 5.68507 5.79972 5.88584 5.99388 6.09215 6.14602 6.16203 6.31663 6.35109 6.44142 6.51987 6.63647 6.79702 7.14956 7.30962 7.34228 7.47344 7.67270 7.73714 7.92326 8.14298 8.18772 8.34684 8.41221 9.26707 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.004001 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.842016 B = 6996.963958 C = 8872.320047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.149 4.149 3 C -0.118 4.118 4 C 0.500 3.500 5 O -0.518 6.518 6 O -0.336 6.336 7 C 0.058 3.942 8 C 0.134 3.866 9 N -0.742 5.742 10 C 0.283 3.717 11 C -0.264 4.264 12 C 0.136 3.864 13 C -0.392 4.392 14 H 0.099 0.901 15 C 0.066 3.934 16 N -0.716 5.716 17 Si 0.926 3.074 18 H -0.258 1.258 19 H -0.269 1.269 20 H -0.252 1.252 21 C -0.221 4.221 22 C -0.016 4.016 23 C -0.169 4.169 24 N 0.038 4.962 25 O -0.286 6.286 26 O -0.281 6.281 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.402 0.598 37 H 0.136 0.864 38 H 0.300 0.700 39 H 0.114 0.886 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.140 -0.699 -6.148 8.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.150 4.150 3 C -0.175 4.175 4 C 0.346 3.654 5 O -0.409 6.409 6 O -0.252 6.252 7 C -0.016 4.016 8 C 0.009 3.991 9 N -0.378 5.378 10 C 0.177 3.823 11 C -0.290 4.290 12 C 0.131 3.869 13 C -0.417 4.417 14 H 0.117 0.883 15 C -0.165 4.165 16 N -0.335 5.335 17 Si 0.748 3.252 18 H -0.183 1.183 19 H -0.194 1.194 20 H -0.175 1.175 21 C -0.242 4.242 22 C -0.036 4.036 23 C -0.269 4.269 24 N 0.477 4.523 25 O -0.450 6.450 26 O -0.449 6.449 27 H 0.141 0.859 28 H 0.133 0.867 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.241 0.759 37 H 0.154 0.846 38 H 0.113 0.887 39 H 0.132 0.868 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.272 -1.161 -6.727 9.270 hybrid contribution -0.231 -0.251 0.030 0.343 sum -6.503 -1.412 -6.697 9.441 Atomic orbital electron populations 1.24697 0.94109 1.03704 0.91414 1.21056 0.94667 0.93010 1.06299 1.20838 1.01380 0.92376 1.02911 1.21484 0.81377 0.90032 0.72485 1.90830 1.69610 1.33798 1.46614 1.86703 1.20149 1.35001 1.83357 1.23390 0.92321 0.82745 1.03176 1.21317 0.89954 0.98986 0.88813 1.44789 1.05493 1.67437 1.20053 1.17179 0.84430 0.90523 0.90161 1.20697 0.91282 1.13594 1.03403 1.17563 0.92390 0.86538 0.90388 1.21327 0.96901 1.31188 0.92290 0.88260 1.27759 0.95784 0.93823 0.99142 1.69135 1.20869 1.27389 1.16076 0.85976 0.81002 0.80164 0.78070 1.18256 1.19407 1.17491 1.20749 0.97484 1.06993 0.99001 1.19796 0.89270 0.96903 0.97651 1.19402 0.86383 1.23573 0.97518 1.50170 1.02790 0.96625 1.02680 1.96069 1.12185 1.54426 1.82298 1.96122 1.87705 1.66896 0.94200 0.85850 0.86671 0.90913 0.91167 0.89699 0.89732 0.90753 0.90376 0.90178 0.75920 0.84618 0.88727 0.86812 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 13.92 28.94 0.40 -0.57 16 2 C -0.15 -1.82 6.00 -102.89 -0.62 -2.44 16 3 C -0.12 -1.32 9.85 36.01 0.35 -0.97 16 4 C 0.50 7.63 7.88 34.26 0.27 7.90 16 5 O -0.52 -8.73 16.01 -19.29 -0.31 -9.04 16 6 O -0.34 -5.39 9.44 -40.76 -0.38 -5.78 16 7 C 0.06 0.84 5.61 37.16 0.21 1.05 16 8 C 0.13 2.18 5.38 -4.04 -0.02 2.16 16 9 N -0.74 -14.94 5.44 -58.67 -0.32 -15.26 16 10 C 0.28 6.40 6.60 -83.84 -0.55 5.85 16 11 C -0.26 -5.87 8.05 -38.51 -0.31 -6.18 16 12 C 0.14 3.03 5.62 -106.82 -0.60 2.42 16 13 C -0.39 -8.13 9.31 -35.45 -0.33 -8.46 16 14 H 0.10 1.91 7.98 -52.49 -0.42 1.49 16 15 C 0.07 1.27 5.33 -15.19 -0.08 1.19 16 16 N -0.72 -14.09 10.98 55.98 0.61 -13.48 16 17 Si 0.93 14.05 29.67 -169.99 -5.04 9.00 16 18 H -0.26 -3.93 7.11 56.52 0.40 -3.53 16 19 H -0.27 -4.02 7.11 56.52 0.40 -3.62 16 20 H -0.25 -3.81 7.11 56.52 0.40 -3.41 16 21 C -0.22 -4.69 9.76 -39.04 -0.38 -5.07 16 22 C -0.02 -0.36 9.60 -40.06 -0.38 -0.74 16 23 C -0.17 -4.04 6.59 -79.32 -0.52 -4.56 16 24 N 0.04 0.96 4.75 34.27 0.16 1.13 16 25 O -0.29 -7.23 17.47 -31.57 -0.55 -7.79 16 26 O -0.28 -7.27 19.70 -31.56 -0.62 -7.90 16 27 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 28 H 0.12 1.12 7.49 -52.49 -0.39 0.73 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.08 1.17 7.68 -51.93 -0.40 0.77 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 35 H 0.08 1.21 7.67 -51.93 -0.40 0.81 16 36 H 0.40 8.52 6.03 -40.82 -0.25 8.27 16 37 H 0.14 2.93 4.73 -52.49 -0.25 2.68 16 38 H 0.30 5.15 8.27 -40.82 -0.34 4.81 16 39 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.11 2.34 8.03 -52.49 -0.42 1.92 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -28.16 358.87 -8.22 -36.39 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -4.61 Total: 15.72 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.57 Total: -8.42 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.46 Total: -27.61 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.87 Total: -30.49 kcal Atomic # 14 Polarization: 14.05 SS G_CDS: -5.04 Total: 9.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.16 -8.22 -36.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168073617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.103 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds