Wall clock time and date at job start Tue Mar 31 2020 13:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 8 8 H 1.08999 * 109.47456 * 54.99697 * 7 6 4 9 9 C 1.50695 * 109.47310 * 174.99936 * 7 6 4 10 10 H 1.08005 * 120.00302 * 239.99738 * 9 7 6 11 11 C 1.37884 * 120.00111 * 59.99751 * 9 7 6 12 12 N 1.31510 * 119.99863 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00101 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.47015 * 60.00321 * 13 11 9 15 15 H 1.48497 * 109.47272 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47349 * 300.00276 * 13 11 9 17 17 O 1.42906 * 109.46996 * 294.99650 * 7 6 4 18 18 C 1.42896 * 113.99694 * 149.99832 * 17 7 6 19 19 C 1.50705 * 109.46971 * 179.97438 * 18 17 7 20 20 C 1.35596 * 120.30188 * 359.72562 * 19 18 17 21 21 C 1.40075 * 121.93835 * 179.72440 * 20 19 18 22 22 C 1.35590 * 121.94681 * 0.57929 * 21 20 19 23 23 C 1.40842 * 119.39016 * 359.71537 * 22 21 20 24 24 N 1.31016 * 138.56975 * 180.02562 * 23 22 21 25 25 O 1.21470 * 109.08939 * 179.97438 * 24 23 22 26 26 N 1.21471 * 116.28784 * 0.02562 * 25 24 23 27 27 C 1.31016 * 109.08171 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 29 29 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 30 30 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 34 34 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 35 35 H 0.96998 * 120.00236 * 180.02562 * 12 11 9 36 36 H 1.08995 * 109.47807 * 299.99993 * 18 17 7 37 37 H 1.09000 * 109.47500 * 60.00530 * 18 17 7 38 38 H 1.07997 * 119.03309 * 0.02562 * 20 19 18 39 39 H 1.08007 * 119.02405 * 180.29550 * 21 20 19 40 40 H 1.08001 * 120.31063 * 179.68864 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4485 2.8573 0.0107 8 1 5.7835 2.2522 -0.8318 9 6 6.0247 4.2448 -0.1070 10 1 6.6624 4.4958 -0.9418 11 6 5.7377 5.1940 0.8510 12 7 4.9616 4.8883 1.8678 13 14 6.4525 6.9137 0.7056 14 1 5.9940 7.5346 -0.5632 15 1 5.9966 7.7380 1.8536 16 1 7.9354 6.8356 0.7109 17 8 5.8902 2.2602 1.2315 18 6 7.1138 1.5316 1.1128 19 6 7.4833 0.9486 2.4524 20 6 6.6922 1.1615 3.5329 21 6 6.9998 0.6315 4.7925 22 6 8.1119 -0.1147 5.0048 23 6 8.9856 -0.3740 3.9310 24 7 10.1079 -1.0129 3.7101 25 8 10.4100 -0.8922 2.5397 26 7 9.6505 -0.2389 1.8527 27 6 8.6566 0.1827 2.5950 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.5878 3.4722 -0.8839 34 1 3.5816 3.4669 0.8960 35 1 4.7594 5.5562 2.5415 36 1 6.9889 0.7271 0.3880 37 1 7.9051 2.2024 0.7782 38 1 5.7961 1.7533 3.4180 39 1 6.3338 0.8267 5.6201 40 1 8.3259 -0.5063 5.9883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210111355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:20 Heat of formation + Delta-G solvation = 2.863105 kcal Electronic energy + Delta-G solvation = -26953.113053 eV Core-core repulsion = 22931.913908 eV Total energy + Delta-G solvation = -4021.199145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.39720 -39.74436 -38.75204 -36.88286 -35.74366 -34.61975 -33.23498 -32.84914 -31.60011 -31.40319 -29.83985 -26.35073 -26.10568 -24.59891 -24.30701 -23.16075 -21.65678 -20.11647 -19.76380 -18.77519 -18.70363 -17.66537 -17.16312 -16.48348 -16.16468 -15.82339 -15.53741 -15.12222 -14.57578 -14.25787 -14.10070 -13.97948 -13.57071 -12.96545 -12.84333 -12.70137 -12.48562 -12.35314 -12.19827 -11.80003 -11.65097 -11.52830 -11.48425 -11.25074 -11.14363 -11.00928 -10.85176 -10.65581 -10.53775 -10.13045 -10.02383 -9.62585 -9.57721 -9.28290 -8.69069 -8.32127 -7.89632 -6.17082 -4.34932 0.24318 1.39332 2.15724 3.05209 3.21294 3.27687 3.30199 3.36225 3.36856 3.58936 3.66742 3.91907 4.28900 4.78403 4.85593 5.07860 5.08752 5.12625 5.14484 5.20320 5.39071 5.48666 5.52127 5.62098 5.88959 5.93536 5.96570 6.03438 6.07934 6.21413 6.32952 6.40570 6.43976 6.63583 6.69031 6.84387 6.95404 7.03609 7.40787 7.71470 8.03156 8.46486 8.56990 8.67030 8.85975 9.41491 10.84907 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008582 B = 0.004964 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.800401 B = 5639.481091 C = 7825.685984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.368 6.368 4 C 0.458 3.542 5 O -0.516 6.516 6 C -0.101 4.101 7 C 0.234 3.766 8 H 0.017 0.983 9 C -0.560 4.560 10 H 0.061 0.939 11 C 0.088 3.912 12 N -0.859 5.859 13 Si 0.890 3.110 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.276 1.276 17 O -0.360 6.360 18 C 0.115 3.885 19 C -0.019 4.019 20 C -0.076 4.076 21 C -0.062 4.062 22 C -0.102 4.102 23 C 0.024 3.976 24 N -0.362 5.362 25 O 0.367 5.633 26 N -0.346 5.346 27 C 0.026 3.974 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.139 0.861 35 H 0.264 0.736 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.163 0.837 39 H 0.141 0.859 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 -7.899 3.364 9.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.286 6.286 4 C 0.303 3.697 5 O -0.404 6.404 6 C -0.139 4.139 7 C 0.178 3.822 8 H 0.035 0.965 9 C -0.597 4.597 10 H 0.079 0.921 11 C -0.118 4.118 12 N -0.495 5.495 13 Si 0.717 3.283 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.202 1.202 17 O -0.279 6.279 18 C 0.037 3.963 19 C -0.021 4.021 20 C -0.098 4.098 21 C -0.084 4.084 22 C -0.122 4.122 23 C -0.128 4.128 24 N -0.087 5.087 25 O 0.131 5.869 26 N -0.067 5.067 27 C -0.126 4.126 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.156 0.844 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.180 0.820 39 H 0.159 0.841 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.948 -8.611 3.242 9.405 hybrid contribution -0.162 1.130 0.135 1.150 sum -2.110 -7.480 3.377 8.474 Atomic orbital electron populations 1.21775 0.93385 1.02271 1.03309 1.22828 0.94794 0.81945 1.01926 1.86590 1.26398 1.30820 1.84792 1.24994 0.79302 0.94436 0.71015 1.90569 1.60210 1.43689 1.45949 1.21892 0.97561 0.87703 1.06733 1.19333 0.88066 0.91888 0.82923 0.96500 1.21444 1.32468 0.95811 1.10022 0.92098 1.24964 0.93877 0.98457 0.94521 1.69844 1.34526 1.34185 1.10933 0.86710 0.79810 0.84030 0.77762 1.20014 1.21065 1.20158 1.87899 1.36196 1.68461 1.35392 1.20740 0.90623 0.94435 0.90477 1.18848 0.89724 0.95348 0.98215 1.21067 1.00765 0.97712 0.90249 1.21138 0.95453 0.93884 0.97960 1.19816 0.93759 1.02242 0.96395 1.22832 0.93835 0.98934 0.97149 1.75143 1.14843 1.20681 0.98045 1.85321 1.40311 1.48513 1.12766 1.75215 1.03016 1.09646 1.18854 1.22712 0.97472 1.02426 0.89969 0.91610 0.91738 0.90916 0.92002 0.91815 0.88688 0.84382 0.92547 0.93016 0.92161 0.81982 0.84099 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.15 0.38 -1.20 16 2 C 0.06 0.85 6.19 37.15 0.23 1.08 16 3 O -0.37 -6.60 10.22 -39.26 -0.40 -7.00 16 4 C 0.46 9.38 7.84 36.00 0.28 9.66 16 5 O -0.52 -11.51 15.17 -24.06 -0.36 -11.88 16 6 C -0.10 -2.19 5.22 -27.89 -0.15 -2.33 16 7 C 0.23 5.52 1.82 -27.89 -0.05 5.47 16 8 H 0.02 0.40 7.60 -51.93 -0.39 0.01 16 9 C -0.56 -14.13 8.90 -34.44 -0.31 -14.44 16 10 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 11 C 0.09 2.21 5.24 -17.82 -0.09 2.12 16 12 N -0.86 -21.71 10.93 55.43 0.61 -21.10 16 13 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 O -0.36 -8.40 7.06 -49.67 -0.35 -8.75 16 18 C 0.11 2.44 6.10 36.01 0.22 2.66 16 19 C -0.02 -0.35 5.88 -104.58 -0.62 -0.97 16 20 C -0.08 -1.30 9.29 -39.84 -0.37 -1.67 16 21 C -0.06 -0.83 9.90 -39.84 -0.39 -1.23 16 22 C -0.10 -1.35 10.08 -39.54 -0.40 -1.75 16 23 C 0.02 0.39 7.76 -83.03 -0.64 -0.25 16 24 N -0.36 -5.77 12.29 31.88 0.39 -5.38 16 25 O 0.37 5.84 11.67 26.94 0.31 6.16 16 26 N -0.35 -6.11 12.29 31.87 0.39 -5.72 16 27 C 0.03 0.48 7.48 -83.03 -0.62 -0.14 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 34 H 0.14 3.22 6.22 -51.93 -0.32 2.90 16 35 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 36 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.16 3.03 6.90 -52.49 -0.36 2.67 16 39 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -28.05 350.50 -6.53 -34.57 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.85 Total: 2.14 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.53 Total: -3.01 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 1.39 Total: -32.20 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.80 Total: -21.47 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.05 -6.53 -34.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210111355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.437 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds