Wall clock time and date at job start Tue Mar 31 2020 13:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21256 * 119.99884 * 2 1 4 4 C 1.47185 * 119.99944 * 179.97438 * 2 1 3 5 5 C 1.39869 * 120.14561 * 0.02562 * 4 2 1 6 6 C 1.37896 * 119.93665 * 179.97438 * 5 4 2 7 7 C 1.38332 * 120.23280 * 359.71935 * 6 5 4 8 8 N 1.48015 * 119.84909 * 180.27499 * 7 6 5 9 9 O 1.21800 * 120.00231 * 0.28152 * 8 7 6 10 10 O 1.21803 * 119.99780 * 180.27559 * 8 7 6 11 11 C 1.38845 * 120.29533 * 0.55706 * 7 6 5 12 12 O 1.35918 * 119.96912 * 179.72279 * 11 7 6 13 13 C 1.42900 * 116.99705 * 174.36252 * 12 11 7 14 14 H 1.09000 * 110.77810 * 321.87736 * 13 12 11 15 15 C 1.55157 * 110.71836 * 198.63854 * 13 12 11 16 16 C 1.55125 * 101.48643 * 205.96866 * 15 13 12 17 17 N 1.47419 * 104.72374 * 37.29456 * 16 15 13 18 18 C 1.36938 * 125.65011 * 155.81353 * 17 16 15 19 19 H 1.07996 * 120.00522 * 179.69185 * 18 17 16 20 20 C 1.38811 * 119.99858 * 359.69730 * 18 17 16 21 21 N 1.31622 * 119.99961 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46925 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47039 * 299.99901 * 22 20 18 25 25 H 1.48500 * 109.46900 * 60.00048 * 22 20 18 26 26 C 1.47018 * 108.70373 * 335.55378 * 17 16 15 27 27 C 1.38425 * 120.05844 * 359.44594 * 11 7 6 28 28 H 1.08995 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46930 * 300.00266 * 1 2 3 30 30 H 1.08998 * 109.47434 * 60.00283 * 1 2 3 31 31 H 1.08006 * 120.03285 * 359.97438 * 5 4 2 32 32 H 1.07999 * 119.87876 * 180.02562 * 6 5 4 33 33 H 1.08998 * 111.00362 * 324.21254 * 15 13 12 34 34 H 1.09002 * 111.00143 * 88.02124 * 15 13 12 35 35 H 1.09007 * 110.49521 * 278.45307 * 16 15 13 36 36 H 1.09000 * 110.34282 * 156.06525 * 16 15 13 37 37 H 0.97004 * 119.99753 * 180.02562 * 21 20 18 38 38 H 1.09006 * 109.88544 * 120.70167 * 26 17 16 39 39 H 1.08996 * 109.88518 * 241.86437 * 26 17 16 40 40 H 1.07998 * 120.11666 * 180.25197 * 27 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5466 -2.4877 0.0006 6 6 2.2404 -3.6794 0.0006 7 6 3.6238 -3.6800 -0.0053 8 7 4.3599 -4.9641 -0.0114 9 8 3.7477 -6.0171 -0.0164 10 8 5.5779 -4.9678 -0.0115 11 6 4.3247 -2.4815 0.0005 12 8 5.6839 -2.4899 0.0003 13 6 6.3403 -1.2262 -0.1187 14 1 5.8054 -0.5763 -0.8112 15 6 7.8136 -1.4131 -0.5680 16 6 8.4767 -0.1343 0.0075 17 7 7.8074 0.0844 1.3027 18 6 8.3302 0.7720 2.3652 19 1 7.7558 0.8814 3.2732 20 6 9.5987 1.3287 2.2753 21 7 10.2986 1.1960 1.1685 22 14 10.3117 2.2673 3.7245 23 1 11.6691 2.7587 3.3764 24 1 9.4351 3.4221 4.0458 25 1 10.3973 1.3678 4.9029 26 6 6.4830 -0.5527 1.2625 27 6 3.6406 -1.2782 0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.4666 -2.4911 0.0006 32 1 1.7019 -4.6155 0.0002 33 1 8.2449 -2.3125 -0.1286 34 1 7.8906 -1.4364 -1.6550 35 1 8.3075 0.7146 -0.6550 36 1 9.5448 -0.2947 0.1547 37 1 11.1852 1.5847 1.1059 38 1 6.4083 -1.3026 2.0500 39 1 5.7054 0.2003 1.3899 40 1 4.1849 -0.3454 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225803224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:17 Heat of formation + Delta-G solvation = -10.511292 kcal Electronic energy + Delta-G solvation = -26952.291020 eV Core-core repulsion = 22930.511917 eV Total energy + Delta-G solvation = -4021.779102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.17338 -40.81627 -39.65102 -38.09324 -36.57701 -36.18405 -32.91757 -32.29256 -31.31662 -30.03933 -29.27566 -27.60379 -26.75756 -24.77950 -23.46184 -23.16850 -20.89596 -20.42067 -20.18977 -19.52335 -18.58493 -17.79727 -17.46251 -17.16355 -16.64901 -16.37238 -15.65015 -15.39680 -15.05314 -14.95071 -14.77197 -14.13029 -14.04879 -13.70890 -12.97872 -12.95670 -12.79478 -12.60702 -12.46725 -12.02311 -11.91050 -11.62592 -11.44551 -11.09808 -11.04994 -10.98438 -10.84051 -10.65829 -10.51124 -10.30703 -10.17812 -9.99219 -9.93819 -9.70095 -8.86695 -8.74393 -6.97616 -5.74618 -3.17869 -0.58295 0.66480 0.92401 1.38784 1.88471 2.75809 3.01541 3.36949 3.37537 3.41504 3.42911 3.96639 4.27484 4.31372 4.41425 4.45138 4.57036 4.76605 4.93868 4.99638 5.03579 5.08739 5.19589 5.37687 5.38156 5.41213 5.47420 5.58426 5.60220 5.83403 6.13675 6.25951 6.28253 6.36005 6.44797 6.46591 6.95956 7.11404 7.34501 7.51149 7.72862 7.74243 8.23861 9.10913 9.70870 10.32530 11.29596 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.003898 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.543306 B = 7180.863024 C = 8796.005683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.389 3.611 3 O -0.432 6.432 4 C -0.081 4.081 5 C -0.127 4.127 6 C -0.031 4.031 7 C -0.067 4.067 8 N 0.033 4.967 9 O -0.185 6.185 10 O -0.123 6.123 11 C 0.202 3.798 12 O -0.263 6.263 13 C 0.057 3.943 14 H 0.083 0.917 15 C -0.131 4.131 16 C 0.152 3.848 17 N -0.598 5.598 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.918 3.082 23 H -0.288 1.288 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.118 3.882 27 C -0.158 4.158 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.018 0.982 36 H 0.118 0.882 37 H 0.255 0.745 38 H 0.037 0.963 39 H 0.028 0.972 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.006 -6.966 -5.460 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.264 3.736 3 O -0.305 6.305 4 C -0.082 4.082 5 C -0.146 4.146 6 C -0.050 4.050 7 C -0.152 4.152 8 N 0.552 4.448 9 O -0.392 6.392 10 O -0.347 6.347 11 C 0.151 3.849 12 O -0.172 6.172 13 C 0.002 3.998 14 H 0.101 0.899 15 C -0.170 4.170 16 C 0.027 3.973 17 N -0.325 5.325 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.570 5.570 22 Si 0.748 3.252 23 H -0.214 1.214 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.009 4.009 27 C -0.177 4.177 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.174 0.826 32 H 0.180 0.820 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.136 0.864 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.715 -5.853 -5.384 22.189 hybrid contribution 0.364 0.296 0.724 0.863 sum -20.351 -5.557 -4.660 21.605 Atomic orbital electron populations 1.22246 0.92621 1.05166 1.05585 1.22582 0.92088 0.87084 0.71824 1.90638 1.71975 1.33881 1.34044 1.20824 0.93650 0.95919 0.97857 1.21323 1.00963 0.89690 1.02601 1.20835 0.89963 1.00879 0.93349 1.20781 0.92358 0.82084 1.19967 1.43323 1.01482 1.02032 0.98001 1.94495 1.69975 1.19622 1.55131 1.94665 0.94507 1.94061 1.51440 1.18683 0.85580 0.91224 0.89414 1.86548 1.12505 1.34474 1.83702 1.24078 0.94970 0.81652 0.99142 0.89945 1.23281 0.90436 1.02934 1.00309 1.22109 1.00623 0.89735 0.84811 1.44330 1.12015 1.62946 1.13231 1.19020 0.98448 1.26039 0.92089 0.90395 1.24796 0.96886 1.00829 0.97740 1.69723 1.12328 1.49482 1.25447 0.86099 0.78188 0.79543 0.81346 1.21400 1.21127 1.20996 1.21736 0.90526 0.95346 0.93286 1.21826 0.94363 0.98018 1.03475 0.89498 0.88172 0.88225 0.82580 0.81964 0.89947 0.91155 0.96352 0.86447 0.93414 0.94528 0.95404 0.81637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.91 10.19 36.01 0.37 -0.54 16 2 C 0.39 3.61 7.23 -30.68 -0.22 3.39 16 3 O -0.43 -5.88 17.09 5.58 0.10 -5.79 16 4 C -0.08 -0.79 5.87 -105.08 -0.62 -1.41 16 5 C -0.13 -0.89 9.44 -39.10 -0.37 -1.26 16 6 C -0.03 -0.28 9.53 -39.67 -0.38 -0.66 16 7 C -0.07 -0.89 6.87 -79.69 -0.55 -1.44 16 8 N 0.03 0.52 4.45 34.09 0.15 0.67 16 9 O -0.18 -2.79 18.43 -29.46 -0.54 -3.33 16 10 O -0.12 -2.22 17.21 -36.52 -0.63 -2.85 16 11 C 0.20 2.92 6.60 -39.29 -0.26 2.66 16 12 O -0.26 -4.50 7.86 -41.70 -0.33 -4.83 16 13 C 0.06 1.02 2.76 -24.90 -0.07 0.95 16 14 H 0.08 1.32 6.59 -51.93 -0.34 0.98 16 15 C -0.13 -2.49 6.82 -24.47 -0.17 -2.66 16 16 C 0.15 3.60 5.91 -2.42 -0.01 3.59 16 17 N -0.60 -15.25 3.39 -169.94 -0.58 -15.83 16 18 C -0.23 -6.34 10.27 -15.06 -0.15 -6.49 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 21 N -0.92 -26.39 10.08 55.49 0.56 -25.83 16 22 Si 0.92 21.93 29.55 -169.99 -5.02 16.90 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.12 2.47 6.51 -3.07 -0.02 2.45 16 27 C -0.16 -2.03 8.32 -38.94 -0.32 -2.35 16 28 H 0.09 0.17 5.60 -51.93 -0.29 -0.12 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.16 0.44 5.92 -52.48 -0.31 0.13 16 32 H 0.16 1.08 7.59 -52.49 -0.40 0.69 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 36 H 0.12 3.12 5.86 -51.93 -0.30 2.82 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 39 H 0.03 0.58 7.43 -51.93 -0.39 0.19 16 40 H 0.17 2.34 4.90 -52.49 -0.26 2.08 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -33.04 340.02 -8.41 -41.45 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.37 Total: -1.64 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.87 Total: -4.06 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.13 Total: -40.99 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -1.40 Total: -16.79 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.04 -8.41 -41.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225803224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.937 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds