Wall clock time and date at job start Tue Mar 31 2020 13:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21256 * 119.99884 * 2 1 4 4 C 1.47185 * 119.99944 * 179.97438 * 2 1 3 5 5 C 1.39869 * 120.14561 * 0.02562 * 4 2 1 6 6 C 1.37896 * 119.93665 * 179.97438 * 5 4 2 7 7 C 1.38332 * 120.23280 * 359.71935 * 6 5 4 8 8 N 1.48015 * 119.84909 * 180.27499 * 7 6 5 9 9 O 1.21800 * 120.00231 * 0.28152 * 8 7 6 10 10 O 1.21803 * 119.99780 * 180.27559 * 8 7 6 11 11 C 1.38845 * 120.29533 * 0.55706 * 7 6 5 12 12 O 1.35918 * 119.96912 * 179.72279 * 11 7 6 13 13 C 1.42900 * 116.99705 * 174.36252 * 12 11 7 14 14 H 1.09000 * 110.77810 * 321.87736 * 13 12 11 15 15 C 1.55157 * 110.71836 * 198.63854 * 13 12 11 16 16 C 1.55125 * 101.48643 * 205.96866 * 15 13 12 17 17 N 1.47419 * 104.72374 * 37.29456 * 16 15 13 18 18 C 1.36938 * 125.65011 * 155.81353 * 17 16 15 19 19 H 1.07996 * 120.00522 * 179.69185 * 18 17 16 20 20 C 1.38811 * 119.99858 * 359.69730 * 18 17 16 21 21 N 1.31622 * 119.99961 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46925 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47039 * 299.99901 * 22 20 18 25 25 H 1.48500 * 109.46900 * 60.00048 * 22 20 18 26 26 C 1.47018 * 108.70373 * 335.55378 * 17 16 15 27 27 C 1.38425 * 120.05844 * 359.44594 * 11 7 6 28 28 H 1.08995 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46930 * 300.00266 * 1 2 3 30 30 H 1.08998 * 109.47434 * 60.00283 * 1 2 3 31 31 H 1.08006 * 120.03285 * 359.97438 * 5 4 2 32 32 H 1.07999 * 119.87876 * 180.02562 * 6 5 4 33 33 H 1.08998 * 111.00362 * 324.21254 * 15 13 12 34 34 H 1.09002 * 111.00143 * 88.02124 * 15 13 12 35 35 H 1.09007 * 110.49521 * 278.45307 * 16 15 13 36 36 H 1.09000 * 110.34282 * 156.06525 * 16 15 13 37 37 H 0.97004 * 119.99753 * 180.02562 * 21 20 18 38 38 H 1.09006 * 109.88544 * 120.70167 * 26 17 16 39 39 H 1.08996 * 109.88518 * 241.86437 * 26 17 16 40 40 H 1.07998 * 120.11666 * 180.25197 * 27 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5466 -2.4877 0.0006 6 6 2.2404 -3.6794 0.0006 7 6 3.6238 -3.6800 -0.0053 8 7 4.3599 -4.9641 -0.0114 9 8 3.7477 -6.0171 -0.0164 10 8 5.5779 -4.9678 -0.0115 11 6 4.3247 -2.4815 0.0005 12 8 5.6839 -2.4899 0.0003 13 6 6.3403 -1.2262 -0.1187 14 1 5.8054 -0.5763 -0.8112 15 6 7.8136 -1.4131 -0.5680 16 6 8.4767 -0.1343 0.0075 17 7 7.8074 0.0844 1.3027 18 6 8.3302 0.7720 2.3652 19 1 7.7558 0.8814 3.2732 20 6 9.5987 1.3287 2.2753 21 7 10.2986 1.1960 1.1685 22 14 10.3117 2.2673 3.7245 23 1 11.6691 2.7587 3.3764 24 1 9.4351 3.4221 4.0458 25 1 10.3973 1.3678 4.9029 26 6 6.4830 -0.5527 1.2625 27 6 3.6406 -1.2782 0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.4666 -2.4911 0.0006 32 1 1.7019 -4.6155 0.0002 33 1 8.2449 -2.3125 -0.1286 34 1 7.8906 -1.4364 -1.6550 35 1 8.3075 0.7146 -0.6550 36 1 9.5448 -0.2947 0.1547 37 1 11.1852 1.5847 1.1059 38 1 6.4083 -1.3026 2.0500 39 1 5.7054 0.2003 1.3899 40 1 4.1849 -0.3454 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225803224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:17 Heat of formation + Delta-G solvation = -22.583492 kcal Electronic energy + Delta-G solvation = -26952.814509 eV Core-core repulsion = 22930.511917 eV Total energy + Delta-G solvation = -4022.302592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.78563 -40.68540 -39.73236 -39.02820 -37.33737 -36.48911 -35.13213 -33.68383 -31.73139 -30.65824 -30.26935 -29.41815 -28.55517 -25.84857 -24.20640 -23.60306 -22.57341 -21.59730 -21.02160 -20.20403 -19.26281 -18.90704 -18.03064 -17.74729 -17.47618 -16.81169 -16.52655 -16.39381 -16.03958 -15.79216 -15.64607 -15.12231 -14.97159 -14.87833 -14.61678 -14.42228 -14.09244 -13.94417 -13.66515 -13.26089 -13.18568 -12.84561 -12.74535 -12.62963 -12.36281 -12.25409 -11.91443 -11.82572 -11.41015 -11.30387 -11.24809 -10.70192 -10.64162 -10.59018 -10.15324 -9.71718 -9.12250 -8.64349 -5.18149 -1.68392 0.35574 0.73119 0.86762 1.04282 1.54875 1.63662 1.91424 2.06215 2.33940 2.48160 2.63495 2.89945 2.97603 3.08131 3.52845 3.64242 3.73145 3.81601 3.90717 3.94589 4.20352 4.23651 4.36536 4.45667 4.56977 4.62212 4.65550 4.73179 4.80763 4.89332 4.89797 4.93226 5.21377 5.28673 5.43042 5.78656 6.00131 6.04707 6.29062 6.48497 6.59592 6.92811 7.37313 7.69020 7.91275 9.15670 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.003898 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.543306 B = 7180.863024 C = 8796.005683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.366 3.634 3 O -0.602 6.602 4 C -0.430 4.430 5 C -0.029 4.029 6 C -0.256 4.256 7 C -0.141 4.141 8 N 0.060 4.940 9 O -0.582 6.582 10 O -0.524 6.524 11 C 0.029 3.971 12 O -0.301 6.301 13 C 0.044 3.956 14 H 0.084 0.916 15 C -0.136 4.136 16 C 0.076 3.924 17 N -0.399 5.399 18 C 0.351 3.649 19 H 0.268 0.732 20 C -0.082 4.082 21 N -0.547 5.547 22 Si 1.053 2.947 23 H -0.250 1.250 24 H -0.226 1.226 25 H -0.234 1.234 26 C 0.034 3.966 27 C -0.123 4.123 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.380 0.620 38 H 0.121 0.879 39 H 0.141 0.859 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.918 33.068 13.108 45.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.265 3.735 3 O -0.497 6.497 4 C -0.436 4.436 5 C -0.051 4.051 6 C -0.278 4.278 7 C -0.268 4.268 8 N 0.418 4.582 9 O -0.684 6.684 10 O -0.635 6.635 11 C -0.016 4.016 12 O -0.215 6.215 13 C -0.015 4.015 14 H 0.102 0.898 15 C -0.174 4.174 16 C -0.043 4.043 17 N -0.066 5.066 18 C 0.172 3.828 19 H 0.284 0.716 20 C -0.315 4.315 21 N -0.174 5.174 22 Si 0.863 3.137 23 H -0.173 1.173 24 H -0.149 1.149 25 H -0.156 1.156 26 C -0.087 4.087 27 C -0.146 4.146 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.131 0.869 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.167 0.833 36 H 0.185 0.815 37 H 0.201 0.799 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 29.501 32.733 12.584 45.827 hybrid contribution -0.137 -1.364 -0.429 1.436 sum 29.364 31.370 12.155 44.655 Atomic orbital electron populations 1.21998 0.94797 1.03643 1.03465 1.21797 0.91197 0.87076 0.73441 1.90161 1.72912 1.35349 1.51310 1.18482 0.93309 0.92742 1.39076 1.20507 0.96889 0.90796 0.96859 1.19105 0.91291 0.96221 1.21198 1.19445 0.91579 0.80396 1.35413 1.41842 0.98636 1.00856 1.16914 1.93841 1.71118 1.24921 1.78547 1.93792 0.99135 1.94702 1.75876 1.17477 0.80536 0.91729 1.11822 1.86420 1.17139 1.28543 1.89421 1.23523 0.95534 0.87016 0.95410 0.89795 1.23154 0.91054 0.98946 1.04243 1.24255 1.00945 0.98404 0.80738 1.49755 1.15061 1.28051 1.13763 1.26670 0.91667 0.74610 0.89890 0.71636 1.28948 0.95152 1.01244 1.06144 1.69877 1.14001 1.09212 1.24311 0.83982 0.79656 0.78291 0.71766 1.17315 1.14863 1.15646 1.23913 0.82343 1.00686 1.01736 1.20090 0.94424 0.91911 1.08173 0.90766 0.89427 0.89853 0.86886 0.92427 0.90227 0.87299 0.83320 0.81502 0.79944 0.86112 0.84182 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.32 10.19 71.24 0.73 -6.60 16 2 C 0.37 18.79 7.23 28.04 0.20 18.99 16 3 O -0.60 -31.94 17.09 -2.95 -0.05 -31.99 16 4 C -0.43 -25.21 5.87 -20.16 -0.12 -25.33 16 5 C -0.03 -1.81 9.44 22.58 0.21 -1.60 16 6 C -0.26 -18.74 9.53 22.21 0.21 -18.53 16 7 C -0.14 -10.88 6.87 36.54 0.25 -10.63 16 8 N 0.06 5.21 4.45 -46.06 -0.21 5.01 16 9 O -0.58 -53.18 18.43 18.89 0.35 -52.83 16 10 O -0.52 -44.64 17.21 25.63 0.44 -44.20 16 11 C 0.03 1.87 6.60 22.46 0.15 2.02 16 12 O -0.30 -16.46 7.86 -71.38 -0.56 -17.02 16 13 C 0.04 1.36 2.76 31.78 0.09 1.44 16 14 H 0.08 2.71 6.59 -2.39 -0.02 2.70 16 15 C -0.14 -2.65 6.82 32.06 0.22 -2.43 16 16 C 0.08 0.24 5.91 86.93 0.51 0.76 16 17 N -0.40 -0.41 3.39 -691.57 -2.35 -2.76 16 18 C 0.35 -3.85 10.27 84.03 0.86 -2.99 16 19 H 0.27 -5.68 7.83 -2.91 -0.02 -5.71 16 20 C -0.08 1.02 5.49 84.86 0.47 1.49 16 21 N -0.55 5.20 10.08 21.65 0.22 5.41 16 22 Si 1.05 -14.09 29.55 68.60 2.03 -12.07 16 23 H -0.25 2.59 7.11 99.48 0.71 3.29 16 24 H -0.23 2.70 7.11 99.48 0.71 3.40 16 25 H -0.23 2.55 7.11 99.48 0.71 3.25 16 26 C 0.03 0.56 6.51 86.73 0.56 1.12 16 27 C -0.12 -6.99 8.32 22.68 0.19 -6.80 16 28 H 0.07 2.94 5.60 -2.39 -0.01 2.92 16 29 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 30 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.11 6.05 5.92 -2.91 -0.02 6.03 16 32 H 0.06 4.40 7.59 -2.91 -0.02 4.37 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.15 -0.12 8.14 -2.38 -0.02 -0.14 16 36 H 0.17 -0.27 5.86 -2.39 -0.01 -0.29 16 37 H 0.38 -4.85 8.31 -92.70 -0.77 -5.62 16 38 H 0.12 2.36 8.06 -2.38 -0.02 2.34 16 39 H 0.14 2.04 7.43 -2.39 -0.02 2.03 16 40 H 0.12 5.58 4.90 -2.91 -0.01 5.57 16 Total: -1.00 -170.84 340.02 5.51 -165.34 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 1.10 Total: 34.19 kcal Atomic # 6 Polarization: -53.63 SS G_CDS: 4.54 Total: -49.09 kcal Atomic # 7 Polarization: 10.00 SS G_CDS: -2.33 Total: 7.66 kcal Atomic # 8 Polarization: -146.21 SS G_CDS: 0.18 Total: -146.04 kcal Atomic # 14 Polarization: -14.09 SS G_CDS: 2.03 Total: -12.07 kcal Total: -170.84 5.51 -165.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225803224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.753 kcal (2) G-P(sol) polarization free energy of solvation -170.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -165.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds