Wall clock time and date at job start Tue Mar 31 2020 13:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21247 * 120.00484 * 2 1 4 4 C 1.47188 * 119.99573 * 179.97438 * 2 1 3 5 5 C 1.39879 * 120.14859 * 0.27703 * 4 2 1 6 6 C 1.37891 * 119.93689 * 180.27186 * 5 4 2 7 7 C 1.38334 * 120.23526 * 359.45020 * 6 5 4 8 8 N 1.48010 * 119.85210 * 180.25496 * 7 6 5 9 9 O 1.21804 * 119.99940 * 359.97438 * 8 7 6 10 10 O 1.21801 * 119.99922 * 180.02562 * 8 7 6 11 11 C 1.38853 * 120.29308 * 0.27690 * 7 6 5 12 12 O 1.35914 * 119.96646 * 180.02562 * 11 7 6 13 13 C 1.42904 * 116.99753 * 186.17994 * 12 11 7 14 14 C 1.53933 * 113.73838 * 255.86208 * 13 12 11 15 15 N 1.48190 * 86.10330 * 221.95895 * 14 13 12 16 16 C 1.46901 * 111.07126 * 137.51510 * 15 14 13 17 17 C 1.50704 * 109.46770 * 70.57122 * 16 15 14 18 18 H 1.07995 * 120.00137 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99700 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99992 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99976 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46673 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47336 * 119.99702 * 21 19 17 24 24 H 1.48501 * 109.46982 * 240.00358 * 21 19 17 25 25 C 1.47963 * 90.79503 * 24.59634 * 15 14 13 26 26 C 1.38425 * 120.05820 * 359.97438 * 11 7 6 27 27 H 1.08996 * 109.47296 * 270.00660 * 1 2 3 28 28 H 1.08997 * 109.46489 * 30.00689 * 1 2 3 29 29 H 1.08995 * 109.47008 * 150.00051 * 1 2 3 30 30 H 1.08001 * 120.02995 * 0.02562 * 5 4 2 31 31 H 1.07997 * 119.87745 * 179.73243 * 6 5 4 32 32 H 1.09007 * 112.93356 * 27.43018 * 13 12 11 33 33 H 1.09002 * 113.75459 * 336.23403 * 14 13 12 34 34 H 1.08992 * 113.76207 * 107.60039 * 14 13 12 35 35 H 1.09004 * 109.46510 * 190.56629 * 16 15 14 36 36 H 1.09000 * 109.47559 * 310.56775 * 16 15 14 37 37 H 0.97002 * 119.99909 * 180.02562 * 20 19 17 38 38 H 1.09007 * 113.75986 * 221.08165 * 25 15 14 39 39 H 1.09004 * 113.76097 * 89.72917 * 25 15 14 40 40 H 1.08008 * 120.11494 * 179.97438 * 26 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5465 -2.4879 -0.0047 6 6 2.2403 -3.6796 0.0015 7 6 3.6236 -3.6803 0.0015 8 7 4.3597 -4.9644 0.0025 9 8 3.7474 -6.0173 0.0038 10 8 5.5777 -4.9681 0.0030 11 6 4.3246 -2.4817 0.0011 12 8 5.6838 -2.4901 0.0005 13 6 6.3404 -1.2283 0.1372 14 6 6.9312 -0.6914 -1.1790 15 7 8.1101 -0.2985 -0.3717 16 6 9.3607 -0.6121 -1.0758 17 6 9.5248 0.3210 -2.2478 18 1 8.7750 1.0716 -2.4496 19 6 10.6323 0.2165 -3.0623 20 7 11.5457 -0.6972 -2.8163 21 14 10.8355 1.3726 -4.5155 22 1 9.6783 2.3013 -4.5745 23 1 12.0891 2.1525 -4.3561 24 1 10.9001 0.5826 -5.7713 25 6 7.7932 -1.3365 0.6340 26 6 3.6405 -1.2783 0.0000 27 1 -0.3633 0.0001 1.0276 28 1 -0.3632 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 0.4665 -2.4912 -0.0097 31 1 1.7017 -4.6156 0.0018 32 1 5.7440 -0.4958 0.6813 33 1 7.1418 -1.4677 -1.9146 34 1 6.3814 0.1526 -1.5952 35 1 10.2021 -0.4901 -0.3936 36 1 9.3285 -1.6415 -1.4327 37 1 12.3250 -0.7705 -3.3891 38 1 7.9310 -1.0068 1.6639 39 1 8.2565 -2.3018 0.4299 40 1 4.1849 -0.3455 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225804893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:04 Heat of formation + Delta-G solvation = -3.641552 kcal Electronic energy + Delta-G solvation = -26454.301252 eV Core-core repulsion = 22432.820044 eV Total energy + Delta-G solvation = -4021.481208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.24183 -40.95378 -39.97819 -38.74679 -37.19167 -36.36131 -33.03206 -32.74952 -31.39331 -30.18223 -29.20622 -26.84976 -25.97811 -25.38120 -23.60073 -23.44029 -21.51732 -20.72318 -19.82114 -19.47695 -18.64472 -17.96109 -17.53349 -16.90279 -16.50605 -16.39814 -15.78231 -15.54996 -15.26316 -15.21140 -14.74409 -14.46900 -14.18169 -13.76396 -13.59534 -13.00287 -12.84925 -12.61321 -12.51921 -12.22657 -12.10055 -11.95736 -11.58267 -11.50235 -11.09909 -11.03951 -10.98619 -10.73149 -10.49955 -10.40988 -10.37592 -10.06845 -9.82721 -9.23109 -8.96154 -8.56207 -7.99592 -6.09691 -4.12447 -0.67329 0.56150 0.84254 1.31462 1.78814 2.62614 2.91631 3.27267 3.27539 3.34946 3.39541 3.87224 4.17255 4.23458 4.34016 4.37010 4.45353 4.52016 4.59270 4.72953 4.83680 4.87392 4.96703 5.12112 5.25863 5.27223 5.38753 5.47280 5.56178 5.76827 5.91166 5.97369 6.12953 6.21206 6.33517 6.45970 6.85100 6.94511 7.11991 7.53521 7.67264 7.76338 7.99354 8.30994 8.94326 9.52414 11.01466 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.003449 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.629281 B = 8116.992611 C = 9644.670371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.390 3.610 3 O -0.434 6.434 4 C -0.081 4.081 5 C -0.125 4.125 6 C -0.031 4.031 7 C -0.066 4.066 8 N 0.032 4.968 9 O -0.182 6.182 10 O -0.123 6.123 11 C 0.201 3.799 12 O -0.265 6.265 13 C 0.028 3.972 14 C 0.009 3.991 15 N -0.471 5.471 16 C 0.162 3.838 17 C -0.514 4.514 18 H 0.063 0.937 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.013 3.987 26 C -0.159 4.159 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.037 0.963 36 H 0.005 0.995 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.372 -3.681 7.713 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.266 3.734 3 O -0.307 6.307 4 C -0.082 4.082 5 C -0.143 4.143 6 C -0.049 4.049 7 C -0.151 4.151 8 N 0.551 4.449 9 O -0.390 6.390 10 O -0.346 6.346 11 C 0.150 3.850 12 O -0.174 6.174 13 C -0.028 4.028 14 C -0.120 4.120 15 N -0.196 5.196 16 C 0.036 3.964 17 C -0.553 4.553 18 H 0.081 0.919 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.115 4.115 26 C -0.178 4.178 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.174 0.826 31 H 0.181 0.819 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.023 0.977 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -24.998 -2.079 7.818 26.275 hybrid contribution 0.445 -0.538 -1.141 1.337 sum -24.554 -2.617 6.678 25.580 Atomic orbital electron populations 1.22250 0.92530 1.05557 1.05272 1.22588 0.92128 0.87012 0.71722 1.90623 1.72047 1.33894 1.34118 1.20818 0.93641 0.95911 0.97877 1.21303 1.01031 0.89664 1.02352 1.20859 0.89987 1.00954 0.93142 1.20816 0.92398 0.82196 1.19643 1.43329 1.01496 1.02028 0.98075 1.94505 1.69950 1.19570 1.54983 1.94673 0.94465 1.94052 1.51415 1.18663 0.85480 0.91248 0.89587 1.86602 1.12690 1.34625 1.83465 1.25426 0.93702 0.82786 1.00857 1.24304 0.93632 0.99699 0.94341 1.68701 1.04118 1.38296 1.08460 1.20257 0.86370 0.95842 0.93898 1.21088 1.06707 1.17104 1.10396 0.91915 1.24989 0.95712 0.95719 0.98029 1.69960 1.10742 1.33700 1.38946 0.86425 0.78150 0.80697 0.82079 1.19671 1.20861 1.20989 1.24183 0.90064 0.97611 0.99692 1.21725 0.94326 0.97895 1.03871 0.87901 0.88763 0.89109 0.82623 0.81907 0.87509 0.89920 0.89521 0.94478 0.97742 0.92791 0.88989 0.89893 0.81687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.68 9.76 36.01 0.35 -0.33 16 2 C 0.39 3.05 7.23 -30.67 -0.22 2.83 16 3 O -0.43 -5.16 17.09 5.59 0.10 -5.07 16 4 C -0.08 -0.67 5.87 -105.08 -0.62 -1.29 16 5 C -0.12 -0.74 9.36 -39.09 -0.37 -1.10 16 6 C -0.03 -0.25 9.53 -39.67 -0.38 -0.63 16 7 C -0.07 -0.81 6.87 -79.69 -0.55 -1.35 16 8 N 0.03 0.48 4.45 34.09 0.15 0.63 16 9 O -0.18 -2.66 18.43 -29.46 -0.54 -3.20 16 10 O -0.12 -2.14 17.21 -36.52 -0.63 -2.77 16 11 C 0.20 2.60 6.65 -39.28 -0.26 2.34 16 12 O -0.26 -4.10 8.14 -41.69 -0.34 -4.44 16 13 C 0.03 0.43 3.77 -25.80 -0.10 0.33 16 14 C 0.01 0.17 7.32 -2.63 -0.02 0.15 16 15 N -0.47 -9.92 6.25 -239.74 -1.50 -11.42 16 16 C 0.16 4.19 4.58 -4.97 -0.02 4.17 16 17 C -0.51 -14.43 8.84 -34.44 -0.30 -14.74 16 18 H 0.06 1.75 7.80 -52.49 -0.41 1.34 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 21 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.01 0.23 7.81 -2.76 -0.02 0.21 16 26 C -0.16 -1.75 8.55 -38.94 -0.33 -2.08 16 27 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.10 6.46 -51.93 -0.34 -0.23 16 30 H 0.16 0.28 6.35 -52.49 -0.33 -0.05 16 31 H 0.16 0.97 7.59 -52.49 -0.40 0.57 16 32 H 0.11 1.40 6.10 -51.93 -0.32 1.08 16 33 H 0.08 1.67 7.79 -51.93 -0.40 1.27 16 34 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.00 0.13 7.70 -51.93 -0.40 -0.27 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.51 7.79 -51.93 -0.40 1.11 16 40 H 0.17 1.88 5.56 -52.48 -0.29 1.59 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -33.89 349.49 -9.26 -43.15 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.54 Total: -2.98 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -2.94 Total: -9.95 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.61 Total: -36.64 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -1.42 Total: -15.48 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.89 -9.26 -43.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225804893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.507 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds