Wall clock time and date at job start Tue Mar 31 2020 13:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21304 * 119.99849 * 2 1 4 4 C 1.46778 * 120.00418 * 179.97438 * 2 1 3 5 5 C 1.40025 * 120.21983 * 6.22443 * 4 2 1 6 6 C 1.37675 * 119.88152 * 180.02562 * 5 4 2 7 7 C 1.38629 * 120.33728 * 0.02562 * 6 5 4 8 8 C 1.38054 * 120.45425 * 359.72006 * 7 6 5 9 9 N 1.48019 * 119.94463 * 180.27526 * 8 7 6 10 10 O 1.21803 * 120.00059 * 354.03149 * 9 8 7 11 11 O 1.21799 * 119.99830 * 174.01861 * 9 8 7 12 12 C 1.38691 * 120.11462 * 0.55619 * 8 7 6 13 13 O 1.35589 * 120.17693 * 179.71973 * 12 8 7 14 14 C 1.42894 * 117.00174 * 279.44116 * 13 12 8 15 15 H 1.09005 * 110.78259 * 20.30804 * 14 13 12 16 16 C 1.55398 * 110.85652 * 143.61209 * 14 13 12 17 17 C 1.54911 * 101.66835 * 153.69690 * 16 14 13 18 18 N 1.47426 * 104.83197 * 323.07824 * 17 16 14 19 19 C 1.36934 * 125.64626 * 204.08880 * 18 17 16 20 20 H 1.07997 * 120.00310 * 164.63396 * 19 18 17 21 21 C 1.38815 * 120.00275 * 344.64244 * 19 18 17 22 22 N 1.31615 * 119.99917 * 351.62203 * 21 19 18 23 23 Si 1.86796 * 120.00184 * 171.62721 * 21 19 18 24 24 H 1.48500 * 109.47175 * 94.95502 * 23 21 19 25 25 H 1.48497 * 109.47558 * 214.95766 * 23 21 19 26 26 H 1.48504 * 109.47106 * 334.95824 * 23 21 19 27 27 C 1.47019 * 108.70368 * 24.12435 * 18 17 16 28 28 H 1.09000 * 109.47299 * 239.99542 * 1 2 3 29 29 H 1.08999 * 109.47354 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.47001 * 120.00002 * 1 2 3 31 31 H 1.07997 * 120.05884 * 0.05165 * 5 4 2 32 32 H 1.07999 * 119.83257 * 180.02562 * 6 5 4 33 33 H 1.08001 * 119.77536 * 180.02562 * 7 6 5 34 34 H 1.09001 * 110.89347 * 35.62646 * 16 14 13 35 35 H 1.09004 * 111.07351 * 271.84725 * 16 14 13 36 36 H 1.09001 * 110.37275 * 204.23439 * 17 16 14 37 37 H 1.09007 * 110.36537 * 81.91306 * 17 16 14 38 38 H 0.97002 * 120.00428 * 179.97438 * 22 21 19 39 39 H 1.09000 * 109.88039 * 118.35507 * 27 18 17 40 40 H 1.08993 * 109.88186 * 239.36774 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2410 -1.2711 0.0006 5 6 1.5518 -2.4830 -0.1301 6 6 2.2472 -3.6712 -0.1281 7 6 3.6272 -3.6746 0.0031 8 6 4.3212 -2.4877 0.1276 9 7 5.7953 -2.5042 0.2609 10 8 6.3851 -3.5642 0.3702 11 8 6.4185 -1.4577 0.2611 12 6 3.6391 -1.2801 0.1337 13 8 4.3189 -0.1139 0.2616 14 6 4.7101 0.2675 1.5819 15 1 4.7170 -0.5955 2.2478 16 6 6.1004 0.9617 1.5682 17 6 6.0170 1.8551 2.8309 18 7 4.6204 2.3259 2.8685 19 6 4.1781 3.4631 3.4900 20 1 3.1990 3.8575 3.2614 21 6 4.9881 4.1092 4.4137 22 7 6.1073 3.5451 4.8157 23 14 4.4898 5.7791 5.0864 24 1 3.7697 5.5998 6.3727 25 1 5.7034 6.6052 5.3096 26 1 3.6000 6.4599 4.1117 27 6 3.7812 1.3718 2.1290 28 1 -0.3634 -0.5139 0.8899 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 0.4767 -2.4855 -0.2326 32 1 1.7148 -4.6054 -0.2294 33 1 4.1637 -4.6120 0.0031 34 1 6.2243 1.5660 0.6695 35 1 6.9042 0.2310 1.6589 36 1 6.7000 2.7001 2.7436 37 1 6.2451 1.2726 3.7235 38 1 6.6736 3.9967 5.4610 39 1 3.0396 0.9347 2.7976 40 1 3.2824 1.8793 1.3034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228971756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:37 Heat of formation + Delta-G solvation = -6.341125 kcal Electronic energy + Delta-G solvation = -27926.782995 eV Core-core repulsion = 23905.184725 eV Total energy + Delta-G solvation = -4021.598270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.22482 -40.64381 -38.61783 -38.26543 -36.47357 -36.06433 -32.85650 -32.34338 -30.95256 -29.83466 -29.01809 -27.34051 -26.49653 -24.52313 -24.19920 -22.55208 -20.74337 -20.49106 -20.17818 -18.71816 -18.54023 -17.97573 -17.48146 -16.90934 -16.49941 -16.36538 -15.60735 -15.29035 -14.65659 -14.61302 -14.51295 -14.27381 -13.48967 -13.21269 -13.11459 -12.76948 -12.59028 -12.35417 -12.20704 -12.15231 -11.66457 -11.56213 -11.40304 -11.03205 -10.98180 -10.79502 -10.76769 -10.40907 -10.09125 -10.04903 -9.96031 -9.71315 -9.66785 -9.49155 -9.24842 -8.54684 -6.71250 -5.72080 -3.05947 -0.37100 0.13072 1.13380 1.33977 2.07274 2.89247 3.38982 3.42196 3.47792 3.50775 3.61321 4.10165 4.28769 4.37313 4.48596 4.52830 4.67905 4.89585 5.11239 5.13608 5.20979 5.27757 5.33938 5.45345 5.47811 5.53313 5.69147 5.71768 5.82426 5.87239 6.33964 6.41312 6.53115 6.59007 6.76812 6.81868 7.42143 7.48227 7.62606 7.66531 7.72487 7.81124 8.29576 9.21857 9.83240 10.52296 11.41367 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015293 B = 0.004451 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.422508 B = 6289.143013 C = 7761.708673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.373 3.627 3 O -0.399 6.399 4 C -0.190 4.190 5 C -0.015 4.015 6 C -0.146 4.146 7 C -0.019 4.019 8 C -0.091 4.091 9 N 0.028 4.972 10 O -0.180 6.180 11 O -0.118 6.118 12 C 0.231 3.769 13 O -0.296 6.296 14 C 0.097 3.903 15 H 0.055 0.945 16 C -0.131 4.131 17 C 0.173 3.827 18 N -0.597 5.597 19 C -0.227 4.227 20 H 0.074 0.926 21 C -0.005 4.005 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.117 3.883 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.254 0.746 39 H 0.012 0.988 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.667 -17.264 -11.645 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.247 3.753 3 O -0.270 6.270 4 C -0.192 4.192 5 C -0.034 4.034 6 C -0.164 4.164 7 C -0.038 4.038 8 C -0.176 4.176 9 N 0.548 4.452 10 O -0.388 6.388 11 O -0.341 6.341 12 C 0.182 3.818 13 O -0.211 6.211 14 C 0.043 3.957 15 H 0.074 0.926 16 C -0.169 4.169 17 C 0.048 3.952 18 N -0.324 5.324 19 C -0.356 4.356 20 H 0.092 0.908 21 C -0.202 4.202 22 N -0.563 5.563 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.215 1.215 26 H -0.205 1.205 27 C -0.009 4.009 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.030 0.970 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.896 -16.442 -11.673 23.412 hybrid contribution 0.092 0.353 0.640 0.736 sum -11.805 -16.089 -11.034 22.802 Atomic orbital electron populations 1.22218 0.93034 1.05790 1.04086 1.22163 0.91585 0.87058 0.74469 1.90687 1.71324 1.33232 1.31752 1.21094 0.91892 0.97276 1.08966 1.21803 1.01203 0.90562 0.89795 1.21117 0.92467 0.99410 1.03422 1.21215 0.94897 0.96893 0.90804 1.21753 0.81255 0.96509 1.18043 1.43376 1.02807 1.00775 0.98255 1.94506 1.69831 1.20089 1.54411 1.94675 1.67089 1.20870 1.51515 1.18821 0.89489 0.85198 0.88262 1.86064 1.71381 1.33159 1.30448 1.23654 0.97771 0.96336 0.77960 0.92639 1.23270 0.93019 0.99108 1.01527 1.21425 0.87193 0.95420 0.91175 1.44349 1.02472 1.23573 1.62020 1.19000 1.01562 0.98819 1.16207 0.90785 1.24901 0.97869 0.99520 0.97915 1.69945 1.14040 1.37782 1.34491 0.86115 0.77389 0.83590 0.78757 1.21628 1.21534 1.20481 1.21941 0.92779 0.90614 0.95577 0.88955 0.89089 0.89097 0.82892 0.82922 0.82432 0.90582 0.90493 0.91363 0.95018 0.93623 0.97024 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 9.02 36.00 0.32 -1.07 16 2 C 0.37 4.60 7.20 -30.86 -0.22 4.38 16 3 O -0.40 -6.96 12.45 -16.28 -0.20 -7.16 16 4 C -0.19 -2.18 5.88 -104.94 -0.62 -2.79 16 5 C -0.02 -0.10 9.46 -39.12 -0.37 -0.47 16 6 C -0.15 -0.87 10.02 -39.64 -0.40 -1.27 16 7 C -0.02 -0.17 9.55 -39.50 -0.38 -0.55 16 8 C -0.09 -1.25 6.83 -79.85 -0.55 -1.79 16 9 N 0.03 0.46 4.45 34.01 0.15 0.61 16 10 O -0.18 -2.83 18.45 -29.46 -0.54 -3.38 16 11 O -0.12 -2.16 13.96 -36.47 -0.51 -2.67 16 12 C 0.23 3.45 5.57 -38.58 -0.22 3.24 16 13 O -0.30 -5.54 6.79 -49.43 -0.34 -5.88 16 14 C 0.10 1.98 2.57 -24.76 -0.06 1.92 16 15 H 0.06 1.11 7.87 -51.93 -0.41 0.70 16 16 C -0.13 -2.80 5.86 -24.45 -0.14 -2.94 16 17 C 0.17 4.45 5.37 -2.53 -0.01 4.43 16 18 N -0.60 -16.33 3.39 -170.07 -0.58 -16.90 16 19 C -0.23 -6.64 10.21 -15.06 -0.15 -6.80 16 20 H 0.07 2.11 7.84 -52.49 -0.41 1.70 16 21 C 0.00 -0.14 5.39 -17.43 -0.09 -0.24 16 22 N -0.92 -27.62 10.87 55.49 0.60 -27.01 16 23 Si 0.91 22.58 29.56 -169.99 -5.03 17.55 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 27 C 0.12 2.72 6.31 -3.06 -0.02 2.70 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.09 0.38 7.90 -51.92 -0.41 -0.03 16 31 H 0.15 0.39 6.99 -52.49 -0.37 0.03 16 32 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 33 H 0.16 1.12 7.60 -52.49 -0.40 0.73 16 34 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.08 1.53 6.78 -51.93 -0.35 1.18 16 36 H 0.07 1.90 7.27 -51.93 -0.38 1.52 16 37 H 0.03 0.87 7.96 -51.93 -0.41 0.46 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 1.60 5.25 -51.93 -0.27 1.33 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -35.92 334.86 -8.96 -44.88 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -4.66 Total: -3.84 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.91 Total: -1.25 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.18 Total: -43.31 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -1.59 Total: -19.08 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.92 -8.96 -44.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228971756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.538 kcal (2) G-P(sol) polarization free energy of solvation -35.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds