Wall clock time and date at job start Tue Mar 31 2020 13:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21256 * 120.00119 * 2 1 4 4 C 1.47175 * 120.00031 * 180.02562 * 2 1 3 5 5 C 1.39878 * 120.14683 * 359.97438 * 4 2 1 6 6 C 1.37895 * 119.93926 * 179.70263 * 5 4 2 7 7 C 1.38335 * 120.23245 * 0.25449 * 6 5 4 8 8 C 1.38848 * 120.29538 * 0.04634 * 7 6 5 9 9 O 1.35919 * 119.96816 * 179.97438 * 8 7 6 10 10 C 1.42901 * 117.00141 * 354.68872 * 9 8 7 11 11 H 1.09002 * 110.88141 * 321.52430 * 10 9 8 12 12 C 1.55151 * 111.00307 * 197.60886 * 10 9 8 13 13 C 1.54330 * 102.94265 * 206.42156 * 12 10 9 14 14 N 1.47018 * 107.26594 * 22.19029 * 13 12 10 15 15 C 1.36937 * 125.64433 * 181.09565 * 14 13 12 16 16 H 1.08005 * 120.00198 * 179.97438 * 15 14 13 17 17 C 1.38812 * 120.00289 * 359.95875 * 15 14 13 18 18 N 1.31619 * 119.99805 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00322 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47080 * 59.99900 * 19 17 15 21 21 H 1.48502 * 109.47200 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46943 * 300.00166 * 19 17 15 23 23 C 1.47425 * 108.70872 * 1.05841 * 14 13 12 24 24 C 1.38425 * 120.05934 * 359.97438 * 8 7 6 25 25 N 1.48020 * 120.11585 * 180.02562 * 24 8 7 26 26 O 1.21795 * 119.99772 * 90.00418 * 25 24 8 27 27 O 1.21793 * 119.99953 * 270.00052 * 25 24 8 28 28 H 1.08999 * 109.46774 * 239.99865 * 1 2 3 29 29 H 1.08994 * 109.46928 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46989 * 119.99707 * 1 2 3 31 31 H 1.08004 * 120.03102 * 359.97438 * 5 4 2 32 32 H 1.08003 * 119.88310 * 180.27989 * 6 5 4 33 33 H 1.08005 * 119.84941 * 180.02562 * 7 6 5 34 34 H 1.08999 * 110.72015 * 324.78362 * 12 10 9 35 35 H 1.08997 * 110.72559 * 88.05522 * 12 10 9 36 36 H 1.08996 * 109.88307 * 262.77542 * 13 12 10 37 37 H 1.08997 * 110.00904 * 141.68033 * 13 12 10 38 38 H 0.97005 * 120.00159 * 179.97438 * 18 17 15 39 39 H 1.09001 * 110.36897 * 217.02804 * 23 14 13 40 40 H 1.09007 * 110.36202 * 94.71031 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5466 -2.4877 -0.0006 6 6 2.2404 -3.6794 -0.0073 7 6 3.6237 -3.6800 -0.0088 8 6 4.3247 -2.4815 -0.0025 9 8 5.6839 -2.4899 -0.0034 10 6 6.3249 -3.7622 0.1068 11 1 5.7874 -4.4093 0.8000 12 6 7.8088 -3.6024 0.5309 13 6 8.4722 -4.8698 -0.0482 14 7 7.6136 -5.3517 -1.1401 15 6 7.8396 -6.4687 -1.8993 16 1 7.1456 -6.7396 -2.6813 17 6 8.9606 -7.2528 -1.6641 18 7 9.8068 -6.9222 -0.7116 19 14 9.2685 -8.7769 -2.6992 20 1 9.3956 -8.3883 -4.1268 21 1 10.5222 -9.4347 -2.2512 22 1 8.1319 -9.7197 -2.5422 23 6 6.4687 -4.4337 -1.2816 24 6 3.6405 -1.2782 0.0047 25 7 4.3866 0.0003 0.0109 26 8 4.6923 0.5320 -1.0414 27 8 4.6946 0.5205 1.0681 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3633 1.0276 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 0.4666 -2.4911 0.0003 32 1 1.7019 -4.6156 -0.0119 33 1 4.1609 -4.6170 -0.0145 34 1 8.2415 -2.7046 0.0895 35 1 7.8995 -3.5816 1.6169 36 1 8.5515 -5.6333 0.7256 37 1 9.4627 -4.6291 -0.4342 38 1 10.5900 -7.4703 -0.5469 39 1 5.5648 -4.9901 -1.5295 40 1 6.6756 -3.6845 -2.0458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229137051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:47 Heat of formation + Delta-G solvation = -31.192811 kcal Electronic energy + Delta-G solvation = -27030.464150 eV Core-core repulsion = 23007.788229 eV Total energy + Delta-G solvation = -4022.675920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.38297 -41.72774 -40.83533 -39.25105 -37.95299 -37.62344 -34.45318 -33.33498 -32.82316 -31.29929 -30.16031 -29.35588 -27.67159 -26.69001 -25.22322 -23.58063 -22.65559 -22.14364 -21.29225 -20.31353 -19.93122 -19.22055 -19.03614 -18.61707 -17.45886 -17.02285 -16.82600 -16.75333 -16.36372 -16.24590 -16.13217 -15.78247 -15.39320 -14.59966 -14.34882 -14.17278 -13.94498 -13.64764 -13.35955 -13.16617 -13.11542 -13.08356 -12.98042 -12.85022 -12.69599 -12.31427 -12.30713 -12.26325 -12.12731 -12.00253 -11.77848 -11.68619 -11.25171 -10.77168 -10.74791 -9.85491 -9.04257 -7.91707 -5.30392 -1.04942 -0.64449 -0.28338 0.28884 1.00257 1.45732 1.48817 1.52165 1.56897 2.17788 2.45502 2.64404 3.26120 3.28641 3.35116 3.38188 3.55040 3.64396 3.73206 3.81233 3.83797 3.95038 4.07993 4.36578 4.44320 4.55694 4.61009 4.63158 4.66123 4.76357 4.79619 4.81754 4.94040 5.08026 5.14838 5.28762 5.36845 5.47508 5.62356 5.85090 6.09155 6.12138 6.33479 6.99834 7.64705 8.27690 9.18694 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.003128 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.450529 B = 8947.875867 C = 9664.148326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.378 3.622 3 O -0.500 6.500 4 C -0.116 4.116 5 C -0.065 4.065 6 C -0.032 4.032 7 C -0.167 4.167 8 C 0.150 3.850 9 O -0.324 6.324 10 C 0.082 3.918 11 H 0.113 0.887 12 C -0.127 4.127 13 C 0.188 3.812 14 N -0.620 5.620 15 C -0.250 4.250 16 H 0.089 0.911 17 C -0.061 4.061 18 N -0.951 5.951 19 Si 0.983 3.017 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.269 1.269 23 C 0.118 3.882 24 C -0.059 4.059 25 N 0.043 4.957 26 O -0.173 6.173 27 O -0.159 6.159 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.215 0.785 32 H 0.204 0.796 33 H 0.166 0.834 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.032 0.968 37 H 0.014 0.986 38 H 0.250 0.750 39 H 0.070 0.930 40 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.199 4.452 4.055 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.259 3.741 3 O -0.378 6.378 4 C -0.118 4.118 5 C -0.083 4.083 6 C -0.050 4.050 7 C -0.186 4.186 8 C 0.103 3.897 9 O -0.237 6.237 10 C 0.026 3.974 11 H 0.131 0.869 12 C -0.165 4.165 13 C 0.063 3.937 14 N -0.348 5.348 15 C -0.378 4.378 16 H 0.107 0.893 17 C -0.254 4.254 18 N -0.599 5.599 19 Si 0.811 3.189 20 H -0.206 1.206 21 H -0.222 1.222 22 H -0.195 1.195 23 C -0.008 4.008 24 C -0.140 4.140 25 N 0.570 4.430 26 O -0.393 6.393 27 O -0.383 6.383 28 H 0.154 0.846 29 H 0.106 0.894 30 H 0.153 0.847 31 H 0.232 0.768 32 H 0.221 0.779 33 H 0.183 0.817 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -24.967 4.339 4.003 25.656 hybrid contribution 1.762 -0.141 -0.553 1.852 sum -23.205 4.198 3.450 23.833 Atomic orbital electron populations 1.22315 0.86466 1.06979 1.08084 1.23720 0.95396 0.85543 0.69467 1.90697 1.73581 1.35836 1.37704 1.20718 0.87773 0.99789 1.03498 1.22090 1.03418 0.87411 0.95394 1.21970 0.91591 1.01342 0.90065 1.22055 0.97486 0.95686 1.03384 1.18763 0.83853 0.92253 0.94851 1.86184 1.15835 1.34817 1.86833 1.23831 0.93888 0.81176 0.98534 0.86898 1.22897 0.92188 0.99217 1.02179 1.20936 0.92271 0.90844 0.89607 1.44580 1.24277 1.27037 1.38885 1.19430 1.06794 0.99723 1.11887 0.89324 1.25706 0.97055 1.02506 1.00154 1.70139 1.14472 1.40732 1.34511 0.85093 0.77101 0.78859 0.77893 1.20591 1.22175 1.19487 1.22061 0.91949 0.92494 0.94269 1.20797 0.92741 0.80601 1.19896 1.43459 0.97920 1.01969 0.99645 1.94495 1.57723 1.65579 1.21455 1.94464 1.56990 1.66154 1.20679 0.84591 0.89442 0.84733 0.76823 0.77873 0.81673 0.91557 0.88416 0.94979 0.96791 0.94086 0.91230 0.96742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 8.93 71.24 0.64 -0.37 16 2 C 0.38 7.54 7.23 28.04 0.20 7.74 16 3 O -0.50 -16.15 15.19 15.57 0.24 -15.91 16 4 C -0.12 -2.28 5.87 -20.16 -0.12 -2.40 16 5 C -0.07 -0.48 9.47 22.59 0.21 -0.27 16 6 C -0.03 -0.26 10.02 22.21 0.22 -0.04 16 7 C -0.17 -3.07 8.72 22.44 0.20 -2.87 16 8 C 0.15 4.28 6.63 22.46 0.15 4.43 16 9 O -0.32 -11.36 9.71 -92.64 -0.90 -12.26 16 10 C 0.08 2.77 2.82 31.98 0.09 2.86 16 11 H 0.11 3.23 6.61 -2.39 -0.02 3.22 16 12 C -0.13 -4.81 6.69 31.78 0.21 -4.60 16 13 C 0.19 9.10 5.38 86.73 0.47 9.57 16 14 N -0.62 -30.71 3.39 -691.99 -2.35 -33.06 16 15 C -0.25 -13.39 10.28 84.03 0.86 -12.52 16 16 H 0.09 4.45 7.83 -2.91 -0.02 4.42 16 17 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 18 N -0.95 -55.38 10.31 21.65 0.22 -55.16 16 19 Si 0.98 43.79 29.55 68.60 2.03 45.82 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 23 C 0.12 4.65 6.59 86.85 0.57 5.23 16 24 C -0.06 -1.79 6.18 36.79 0.23 -1.56 16 25 N 0.04 1.70 2.28 -45.47 -0.10 1.60 16 26 O -0.17 -7.36 18.90 22.62 0.43 -6.93 16 27 O -0.16 -6.57 18.95 22.36 0.42 -6.15 16 28 H 0.14 -0.17 8.09 -2.39 -0.02 -0.19 16 29 H 0.09 0.65 8.12 -2.39 -0.02 0.63 16 30 H 0.13 -0.11 8.09 -2.39 -0.02 -0.13 16 31 H 0.22 -0.94 7.05 -2.91 -0.02 -0.96 16 32 H 0.20 -0.28 8.06 -2.91 -0.02 -0.31 16 33 H 0.17 2.91 5.28 -2.91 -0.02 2.90 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.10 3.20 8.14 -2.39 -0.02 3.19 16 36 H 0.03 1.67 7.38 -2.39 -0.02 1.65 16 37 H 0.01 0.77 7.50 -2.39 -0.02 0.75 16 38 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 39 H 0.07 2.38 7.23 -2.39 -0.02 2.36 16 40 H 0.01 0.63 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -85.74 343.84 5.47 -80.27 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: 1.08 Total: -0.55 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 4.40 Total: 2.34 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -2.23 Total: -86.62 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: 0.19 Total: -41.25 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -85.74 5.47 -80.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229137051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.079 kcal (2) G-P(sol) polarization free energy of solvation -85.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds