Wall clock time and date at job start Tue Mar 31 2020 13:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21259 * 120.00286 * 2 1 4 4 C 1.47185 * 119.99936 * 179.97438 * 2 1 3 5 5 C 1.39876 * 120.14491 * 359.97438 * 4 2 1 6 6 C 1.37885 * 119.93733 * 180.02562 * 5 4 2 7 7 C 1.38328 * 120.23830 * 359.97438 * 6 5 4 8 8 C 1.38852 * 120.29281 * 0.02562 * 7 6 5 9 9 O 1.35917 * 119.97257 * 180.02562 * 8 7 6 10 10 C 1.42901 * 116.99594 * 5.55991 * 9 8 7 11 11 H 1.09001 * 110.88762 * 32.32329 * 10 9 8 12 12 C 1.55158 * 110.99975 * 156.19956 * 10 9 8 13 13 C 1.54327 * 102.94067 * 153.57481 * 12 10 9 14 14 N 1.47027 * 107.27131 * 337.80829 * 13 12 10 15 15 C 1.36932 * 125.64839 * 178.97646 * 14 13 12 16 16 H 1.08001 * 120.00023 * 179.97438 * 15 14 13 17 17 C 1.38811 * 119.99777 * 359.97126 * 15 14 13 18 18 N 1.31618 * 120.00583 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99585 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47405 * 90.00537 * 19 17 15 21 21 H 1.48509 * 109.47131 * 209.99876 * 19 17 15 22 22 H 1.48498 * 109.47601 * 330.00198 * 19 17 15 23 23 C 1.47469 * 108.71969 * 358.97527 * 14 13 12 24 24 C 1.38425 * 120.05957 * 359.97438 * 8 7 6 25 25 N 1.48014 * 120.11991 * 180.27131 * 24 8 7 26 26 O 1.21794 * 120.00664 * 269.73002 * 25 24 8 27 27 O 1.21803 * 119.99428 * 89.72857 * 25 24 8 28 28 H 1.08991 * 109.47517 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47040 * 300.00828 * 1 2 3 30 30 H 1.09004 * 109.46692 * 60.00300 * 1 2 3 31 31 H 1.08001 * 120.02970 * 0.04190 * 5 4 2 32 32 H 1.08007 * 119.88234 * 180.02562 * 6 5 4 33 33 H 1.08006 * 119.85661 * 180.02562 * 7 6 5 34 34 H 1.09000 * 110.72428 * 271.93899 * 12 10 9 35 35 H 1.09005 * 110.72157 * 35.03629 * 12 10 9 36 36 H 1.09002 * 109.88247 * 97.22246 * 13 12 10 37 37 H 1.09003 * 109.88428 * 218.38845 * 13 12 10 38 38 H 0.96998 * 120.00183 * 179.97438 * 18 17 15 39 39 H 1.09007 * 110.34659 * 265.25197 * 23 14 13 40 40 H 1.09003 * 110.40326 * 142.91944 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5466 -2.4878 0.0017 6 6 2.2403 -3.6794 0.0027 7 6 3.6236 -3.6802 0.0022 8 6 4.3246 -2.4816 0.0011 9 8 5.6838 -2.4900 0.0001 10 6 6.3246 -3.7613 -0.1232 11 1 5.7295 -4.4386 -0.7358 12 6 7.7584 -3.6080 -0.6959 13 6 8.4885 -4.8470 -0.1359 14 7 7.7454 -5.2915 1.0523 15 6 8.0568 -6.3754 1.8291 16 1 7.4456 -6.6196 2.6853 17 6 9.1581 -7.1602 1.5159 18 7 9.9033 -6.8624 0.4727 19 14 9.5825 -8.6392 2.5752 20 1 8.8880 -9.8413 2.0481 21 1 11.0502 -8.8635 2.5470 22 1 9.1467 -8.3887 3.9725 23 6 6.6090 -4.3771 1.2694 24 6 3.6405 -1.2782 0.0000 25 7 4.3865 0.0002 -0.0072 26 8 4.6935 0.5322 1.0445 27 8 4.6934 0.5202 -1.0650 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.4666 -2.4911 0.0014 32 1 1.7017 -4.6156 0.0031 33 1 4.1607 -4.6172 0.0026 34 1 7.7429 -3.6294 -1.7856 35 1 8.2212 -2.6890 -0.3362 36 1 8.5002 -5.6399 -0.8838 37 1 9.5085 -4.5820 0.1424 38 1 10.6731 -7.4106 0.2541 39 1 6.8807 -3.5971 1.9808 40 1 5.7392 -4.9295 1.6248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229137053.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:51 Heat of formation + Delta-G solvation = -27.766512 kcal Electronic energy + Delta-G solvation = -27006.328785 eV Core-core repulsion = 22983.801440 eV Total energy + Delta-G solvation = -4022.527345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.38642 -41.72901 -40.84555 -39.26095 -37.96124 -37.62435 -34.45770 -33.34703 -32.87820 -31.29471 -30.14672 -29.34139 -27.67988 -26.70535 -25.25868 -23.58649 -22.65166 -22.15084 -21.30267 -20.34234 -19.93285 -19.22912 -19.04400 -18.61393 -17.47320 -17.03958 -16.81939 -16.74226 -16.39110 -16.27249 -16.14158 -15.81366 -15.39662 -14.61375 -14.34220 -14.18222 -13.93768 -13.72260 -13.50317 -13.21321 -13.13312 -12.97470 -12.85375 -12.84697 -12.72133 -12.31553 -12.29730 -12.25564 -12.08250 -11.99725 -11.76828 -11.68014 -11.24695 -10.78059 -10.75611 -9.86298 -9.04235 -7.91939 -5.30492 -1.06384 -0.64750 -0.29130 0.28477 0.98941 1.45604 1.47635 1.51523 1.57740 2.16517 2.45224 2.63600 3.26790 3.28202 3.34527 3.36974 3.54174 3.62308 3.72044 3.79519 3.82624 3.89843 4.11029 4.36632 4.45720 4.50994 4.57849 4.62114 4.66827 4.77143 4.79152 4.81700 4.91926 5.06970 5.14719 5.28446 5.36902 5.47763 5.62256 5.85221 6.09042 6.10844 6.33182 6.99977 7.64562 8.27553 9.18632 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024006 B = 0.003093 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.076609 B = 9050.763775 C = 9714.099064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.379 3.621 3 O -0.500 6.500 4 C -0.116 4.116 5 C -0.068 4.068 6 C -0.031 4.031 7 C -0.167 4.167 8 C 0.151 3.849 9 O -0.323 6.323 10 C 0.081 3.919 11 H 0.116 0.884 12 C -0.128 4.128 13 C 0.189 3.811 14 N -0.620 5.620 15 C -0.249 4.249 16 H 0.088 0.912 17 C -0.061 4.061 18 N -0.950 5.950 19 Si 0.983 3.017 20 H -0.279 1.279 21 H -0.297 1.297 22 H -0.270 1.270 23 C 0.120 3.880 24 C -0.059 4.059 25 N 0.043 4.957 26 O -0.172 6.172 27 O -0.160 6.160 28 H 0.129 0.871 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.215 0.785 32 H 0.205 0.795 33 H 0.168 0.832 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.013 0.987 38 H 0.250 0.750 39 H 0.015 0.985 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.614 4.360 -3.483 26.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.260 3.740 3 O -0.378 6.378 4 C -0.118 4.118 5 C -0.086 4.086 6 C -0.048 4.048 7 C -0.186 4.186 8 C 0.103 3.897 9 O -0.236 6.236 10 C 0.025 3.975 11 H 0.134 0.866 12 C -0.166 4.166 13 C 0.064 3.936 14 N -0.348 5.348 15 C -0.377 4.377 16 H 0.106 0.894 17 C -0.254 4.254 18 N -0.598 5.598 19 Si 0.811 3.189 20 H -0.206 1.206 21 H -0.224 1.224 22 H -0.194 1.194 23 C -0.006 4.006 24 C -0.140 4.140 25 N 0.570 4.430 26 O -0.392 6.392 27 O -0.383 6.383 28 H 0.148 0.852 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.232 0.768 32 H 0.222 0.778 33 H 0.185 0.815 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.031 0.969 38 H 0.059 0.941 39 H 0.033 0.967 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.381 4.251 -3.432 25.963 hybrid contribution 1.803 -0.114 0.512 1.878 sum -23.578 4.137 -2.920 24.116 Atomic orbital electron populations 1.22293 0.86594 1.08325 1.06654 1.23691 0.95338 0.85602 0.69393 1.90696 1.73449 1.35843 1.37789 1.20730 0.87830 0.99825 1.03444 1.22153 1.03392 0.87529 0.95535 1.21970 0.91606 1.01302 0.89963 1.22044 0.97444 0.95739 1.03373 1.18782 0.83876 0.92268 0.94770 1.86190 1.15812 1.34934 1.86674 1.23858 0.93996 0.81402 0.98236 0.86626 1.22922 0.92774 0.99328 1.01626 1.20932 0.93092 0.91409 0.88184 1.44597 1.29384 1.29858 1.30958 1.19454 1.09439 1.01811 1.06971 0.89399 1.25698 0.97703 1.02412 0.99624 1.70142 1.19099 1.41206 1.29390 0.85023 0.76572 0.78973 0.78382 1.20574 1.22356 1.19446 1.22007 0.91677 0.92647 0.94301 1.20782 0.92705 0.80639 1.19888 1.43457 0.97926 1.01964 0.99652 1.94494 1.57633 1.65538 1.21525 1.94469 1.57064 1.66176 1.20606 0.85244 0.86968 0.86845 0.76816 0.77774 0.81487 0.88423 0.91611 0.94915 0.96852 0.94089 0.96740 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 10.19 71.24 0.73 -0.33 16 2 C 0.38 7.60 7.23 28.04 0.20 7.80 16 3 O -0.50 -16.07 15.20 15.57 0.24 -15.83 16 4 C -0.12 -2.30 5.87 -20.16 -0.12 -2.42 16 5 C -0.07 -0.51 9.44 22.58 0.21 -0.30 16 6 C -0.03 -0.25 10.02 22.21 0.22 -0.02 16 7 C -0.17 -3.00 8.94 22.44 0.20 -2.80 16 8 C 0.15 4.26 6.67 22.46 0.15 4.41 16 9 O -0.32 -11.31 9.70 -92.62 -0.90 -12.21 16 10 C 0.08 2.74 2.80 31.98 0.09 2.83 16 11 H 0.12 3.25 6.22 -2.39 -0.01 3.24 16 12 C -0.13 -4.86 6.69 31.78 0.21 -4.65 16 13 C 0.19 9.12 5.37 86.73 0.47 9.59 16 14 N -0.62 -30.82 3.40 -691.86 -2.35 -33.17 16 15 C -0.25 -13.35 10.28 84.03 0.86 -12.49 16 16 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 17 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 18 N -0.95 -55.39 10.31 21.65 0.22 -55.17 16 19 Si 0.98 43.95 29.55 68.60 2.03 45.98 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 23 C 0.12 4.75 6.86 86.84 0.60 5.35 16 24 C -0.06 -1.78 6.18 36.79 0.23 -1.55 16 25 N 0.04 1.70 2.28 -45.48 -0.10 1.59 16 26 O -0.17 -7.31 18.91 22.58 0.43 -6.88 16 27 O -0.16 -6.59 18.94 22.39 0.42 -6.17 16 28 H 0.13 -0.41 5.60 -2.39 -0.01 -0.42 16 29 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.22 -0.90 5.92 -2.91 -0.02 -0.92 16 32 H 0.21 -0.36 8.06 -2.91 -0.02 -0.38 16 33 H 0.17 2.82 5.62 -2.91 -0.02 2.80 16 34 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.03 1.70 7.38 -2.39 -0.02 1.68 16 37 H 0.01 0.73 7.51 -2.39 -0.02 0.72 16 38 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.07 2.37 7.80 -2.39 -0.02 2.35 16 Total: -1.00 -85.63 342.61 5.59 -80.03 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: 1.09 Total: -0.70 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 4.52 Total: 2.53 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -2.23 Total: -86.74 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: 0.19 Total: -41.10 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -85.63 5.59 -80.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229137053.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.266 kcal (2) G-P(sol) polarization free energy of solvation -85.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds