Wall clock time and date at job start Tue Mar 31 2020 12:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37766 * 119.81736 * 2 1 4 4 C 1.39762 * 119.92220 * 180.28049 * 3 2 1 5 5 C 1.47286 * 120.21488 * 179.74030 * 4 3 2 6 6 O 1.21519 * 120.00146 * 185.99642 * 5 4 3 7 7 O 1.34769 * 120.00293 * 6.00402 * 5 4 3 8 8 C 1.45199 * 117.00443 * 185.09502 * 7 5 4 9 9 C 1.52990 * 109.47321 * 184.76854 * 8 7 5 10 10 C 1.50702 * 115.55308 * 299.64976 * 9 8 7 11 11 H 1.07995 * 119.99876 * 268.39000 * 10 9 8 12 12 C 1.37875 * 119.99672 * 88.38568 * 10 9 8 13 13 N 1.31511 * 120.00344 * 0.38412 * 12 10 9 14 14 Si 1.86799 * 119.99622 * 180.38345 * 12 10 9 15 15 H 1.48501 * 109.47334 * 270.00087 * 14 12 10 16 16 H 1.48503 * 109.47254 * 29.99854 * 14 12 10 17 17 H 1.48501 * 109.47247 * 149.99916 * 14 12 10 18 18 C 1.53007 * 117.49855 * 85.31863 * 9 8 7 19 19 C 1.53010 * 117.49857 * 153.97803 * 9 8 7 20 20 C 1.40447 * 119.56771 * 359.45956 * 4 3 2 21 21 N 1.38834 * 120.17337 * 180.28074 * 20 4 3 22 22 C 1.38920 * 119.64096 * 0.25953 * 20 4 3 23 23 N 1.48019 * 119.96172 * 179.97438 * 22 20 4 24 24 O 1.21801 * 119.99902 * 185.62173 * 23 22 20 25 25 O 1.21802 * 120.00062 * 5.62530 * 23 22 20 26 26 C 1.37989 * 120.06970 * 0.02562 * 22 20 4 27 27 H 1.08997 * 109.47277 * 270.25729 * 1 2 3 28 28 H 1.08993 * 109.47321 * 30.26518 * 1 2 3 29 29 H 1.09004 * 109.46750 * 150.26520 * 1 2 3 30 30 H 1.08002 * 120.03783 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.46889 * 64.76655 * 8 7 5 32 32 H 1.09005 * 109.46518 * 304.77393 * 8 7 5 33 33 H 0.96998 * 120.00264 * 355.22097 * 13 12 10 34 34 H 1.08995 * 117.49996 * 214.99760 * 18 9 8 35 35 H 1.09002 * 117.49338 * 0.02592 * 18 9 8 36 36 H 1.08996 * 117.49243 * 359.97438 * 19 9 8 37 37 H 1.08994 * 117.49485 * 144.97703 * 19 9 8 38 38 H 0.96990 * 120.00625 * 32.94928 * 21 20 4 39 39 H 0.97005 * 119.99256 * 212.95125 * 21 20 4 40 40 H 1.08002 * 119.78152 * 180.02562 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1920 1.1953 0.0000 4 6 3.5897 1.1978 -0.0059 5 6 4.3285 2.4720 -0.0117 6 8 5.5382 2.4723 -0.1268 7 8 3.6630 3.6375 0.1107 8 6 4.4404 4.8571 -0.0171 9 6 3.5451 6.0647 0.2672 10 6 2.3609 6.2264 -0.6507 11 1 2.4483 6.8267 -1.5442 12 6 1.1660 5.6079 -0.3497 13 7 1.0574 4.8831 0.7422 14 14 -0.2987 5.7996 -1.4931 15 1 -1.0946 6.9847 -1.0837 16 1 0.1814 5.9832 -2.8863 17 1 -1.1476 4.5834 -1.4183 18 6 3.3695 6.4857 1.7277 19 6 4.2192 7.3383 0.7819 20 6 4.2850 -0.0224 -0.0003 21 7 5.6733 -0.0345 -0.0002 22 6 3.5760 -1.2171 0.0056 23 7 4.3016 -2.5072 0.0109 24 8 3.6851 -3.5531 -0.0873 25 8 5.5152 -2.5230 0.1136 26 6 2.1962 -1.2023 0.0054 27 1 -0.3633 0.0046 1.0276 28 1 -0.3633 0.8875 -0.5179 29 1 -0.3633 -0.8924 -0.5097 30 1 1.6497 2.1292 0.0004 31 1 4.8382 4.9300 -1.0293 32 1 5.2641 4.8393 0.6966 33 1 1.8355 4.7262 1.2996 34 1 2.3976 6.8797 2.0246 35 1 3.8923 5.9025 2.4859 36 1 5.3003 7.3155 0.9182 37 1 3.8062 8.2930 0.4562 38 1 6.1644 0.6681 0.4534 39 1 6.1520 -0.7458 -0.4540 40 1 1.6498 -2.1338 0.0104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333192049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:43 Heat of formation + Delta-G solvation = -39.044069 kcal Electronic energy + Delta-G solvation = -27261.157418 eV Core-core repulsion = 23238.141042 eV Total energy + Delta-G solvation = -4023.016377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24097 -40.49943 -39.04861 -37.20335 -36.74357 -35.75708 -34.87565 -32.23072 -31.90369 -31.29055 -27.36982 -26.84408 -25.84503 -24.97459 -24.03465 -22.11997 -21.47614 -20.49345 -19.65529 -18.79779 -18.64257 -17.70935 -17.35882 -17.10456 -16.95687 -16.64889 -15.90382 -15.76713 -14.93975 -14.29052 -14.21028 -13.94976 -13.82315 -13.38281 -12.75582 -12.67390 -12.47576 -12.36542 -12.18528 -12.16913 -11.93665 -11.55935 -11.19821 -11.13905 -11.05807 -10.85676 -10.57872 -10.57202 -10.23134 -10.15544 -10.11283 -9.69337 -9.64219 -8.72755 -8.62244 -8.33995 -8.08760 -6.40885 -4.17508 -0.11866 0.66704 1.33232 1.39705 2.54089 3.01062 3.35585 3.36939 3.42388 3.52179 3.53950 4.31364 4.40992 4.48565 4.69215 4.84666 4.89862 5.01693 5.24235 5.27330 5.45341 5.56159 5.64086 5.64722 5.78994 5.90299 5.94742 6.03760 6.14555 6.18853 6.25330 6.28858 6.41851 6.50080 6.71324 6.80363 7.00967 7.11940 7.16554 7.58415 7.68936 8.07586 8.15739 8.35179 8.82451 9.60732 10.99839 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.004339 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.564451 B = 6451.452011 C = 7888.967647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.145 4.145 3 C 0.043 3.957 4 C -0.193 4.193 5 C 0.511 3.489 6 O -0.529 6.529 7 O -0.305 6.305 8 C 0.111 3.889 9 C 0.011 3.989 10 C -0.578 4.578 11 H 0.052 0.948 12 C 0.037 3.963 13 N -0.895 5.895 14 Si 1.063 2.937 15 H -0.289 1.289 16 H -0.290 1.290 17 H -0.283 1.283 18 C -0.175 4.175 19 C -0.181 4.181 20 C 0.327 3.673 21 N -0.832 5.832 22 C -0.132 4.132 23 N 0.054 4.946 24 O -0.174 6.174 25 O -0.189 6.189 26 C 0.009 3.991 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.173 0.827 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.282 0.718 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.418 0.582 39 H 0.412 0.588 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.238 -9.378 -0.381 9.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.148 4.148 3 C 0.024 3.976 4 C -0.200 4.200 5 C 0.358 3.642 6 O -0.422 6.422 7 O -0.219 6.219 8 C 0.038 3.962 9 C 0.010 3.990 10 C -0.615 4.615 11 H 0.070 0.930 12 C -0.170 4.170 13 N -0.530 5.530 14 Si 0.891 3.109 15 H -0.215 1.215 16 H -0.216 1.216 17 H -0.209 1.209 18 C -0.212 4.212 19 C -0.219 4.219 20 C 0.210 3.790 21 N -0.380 5.380 22 C -0.223 4.223 23 N 0.564 4.436 24 O -0.387 6.387 25 O -0.395 6.395 26 C -0.010 4.010 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.190 0.810 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.255 0.745 39 H 0.248 0.752 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.274 -9.134 -0.562 9.156 hybrid contribution 2.459 0.161 0.159 2.470 sum 2.185 -8.973 -0.403 9.244 Atomic orbital electron populations 1.20745 0.88791 1.03635 1.03231 1.19710 0.97629 0.90857 1.06622 1.22119 0.92170 1.00428 0.82890 1.18853 0.93828 0.89397 1.17932 1.20638 0.85503 0.85172 0.72932 1.90651 1.15167 1.88253 1.48116 1.86777 1.41356 1.13527 1.80201 1.23003 0.92377 0.80842 1.00016 1.19066 0.96854 0.88780 0.94253 1.21192 0.95731 1.35267 1.09324 0.92969 1.25617 1.00044 0.93345 0.98024 1.70598 1.34400 1.35618 1.12338 0.83639 0.75438 0.76658 0.75117 1.21528 1.21595 1.20893 1.22811 1.00383 1.04040 0.93959 1.22891 0.96392 0.96294 1.06279 1.17150 0.85561 0.89618 0.86622 1.43194 1.02040 1.33914 1.58882 1.20531 0.92675 0.81691 1.27382 1.43288 1.00823 1.02518 0.96925 1.94511 1.69161 1.20899 1.54088 1.94378 0.96429 1.93760 1.54914 1.20922 0.90189 1.00315 0.89593 0.90587 0.90136 0.91313 0.80993 0.92048 0.93730 0.90577 0.89199 0.91497 0.91274 0.89377 0.74518 0.75246 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.00 36.01 0.36 -0.73 16 2 C -0.15 -1.81 5.87 -104.67 -0.61 -2.42 16 3 C 0.04 0.65 9.25 -39.18 -0.36 0.29 16 4 C -0.19 -3.14 5.89 -104.82 -0.62 -3.76 16 5 C 0.51 9.61 7.85 34.41 0.27 9.88 16 6 O -0.53 -10.07 13.67 -19.28 -0.26 -10.34 16 7 O -0.31 -6.47 8.06 -40.68 -0.33 -6.79 16 8 C 0.11 2.37 5.40 37.15 0.20 2.57 16 9 C 0.01 0.25 1.45 -155.66 -0.23 0.03 16 10 C -0.58 -14.79 8.71 -34.44 -0.30 -15.09 16 11 H 0.05 1.37 7.81 -52.49 -0.41 0.96 16 12 C 0.04 0.94 5.38 -17.82 -0.10 0.85 16 13 N -0.90 -23.16 13.17 55.43 0.73 -22.43 16 14 Si 1.06 22.78 29.90 -169.99 -5.08 17.70 16 15 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 18 C -0.17 -3.77 8.19 -26.69 -0.22 -3.98 16 19 C -0.18 -3.65 9.95 -26.68 -0.27 -3.91 16 20 C 0.33 4.86 6.74 -83.61 -0.56 4.29 16 21 N -0.83 -11.48 7.49 32.55 0.24 -11.24 16 22 C -0.13 -1.85 6.86 -79.78 -0.55 -2.40 16 23 N 0.05 0.79 4.45 34.04 0.15 0.94 16 24 O -0.17 -2.58 18.45 -29.46 -0.54 -3.12 16 25 O -0.19 -2.82 16.00 -29.46 -0.47 -3.29 16 26 C 0.01 0.11 9.19 -39.55 -0.36 -0.25 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.17 2.98 7.62 -52.49 -0.40 2.58 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.04 0.89 7.94 -51.93 -0.41 0.47 16 33 H 0.28 7.32 5.24 -40.82 -0.21 7.11 16 34 H 0.09 2.09 8.11 -51.93 -0.42 1.67 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 38 H 0.42 5.87 6.59 -40.82 -0.27 5.60 16 39 H 0.41 5.21 6.52 -40.82 -0.27 4.94 16 40 H 0.15 1.50 7.60 -52.49 -0.40 1.10 16 LS Contribution 347.57 15.07 5.24 5.24 Total: -1.00 -27.38 347.57 -8.21 -35.59 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.54 Total: 12.38 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -3.34 Total: -14.63 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 1.13 Total: -32.73 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -1.61 Total: -23.54 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.08 Total: 17.70 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.38 -8.21 -35.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333192049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.456 kcal (2) G-P(sol) polarization free energy of solvation -27.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds