Wall clock time and date at job start Tue Mar 31 2020 12:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37766 * 119.81736 * 2 1 4 4 C 1.39762 * 119.92220 * 180.28049 * 3 2 1 5 5 C 1.47286 * 120.21488 * 179.74030 * 4 3 2 6 6 O 1.21519 * 120.00146 * 185.99642 * 5 4 3 7 7 O 1.34769 * 120.00293 * 6.00402 * 5 4 3 8 8 C 1.45199 * 117.00443 * 185.09502 * 7 5 4 9 9 C 1.52990 * 109.47321 * 184.76854 * 8 7 5 10 10 C 1.50702 * 115.55308 * 299.64976 * 9 8 7 11 11 H 1.07995 * 119.99876 * 268.39000 * 10 9 8 12 12 C 1.37875 * 119.99672 * 88.38568 * 10 9 8 13 13 N 1.31511 * 120.00344 * 0.38412 * 12 10 9 14 14 Si 1.86799 * 119.99622 * 180.38345 * 12 10 9 15 15 H 1.48501 * 109.47334 * 270.00087 * 14 12 10 16 16 H 1.48503 * 109.47254 * 29.99854 * 14 12 10 17 17 H 1.48501 * 109.47247 * 149.99916 * 14 12 10 18 18 C 1.53007 * 117.49855 * 85.31863 * 9 8 7 19 19 C 1.53010 * 117.49857 * 153.97803 * 9 8 7 20 20 C 1.40447 * 119.56771 * 359.45956 * 4 3 2 21 21 N 1.38834 * 120.17337 * 180.28074 * 20 4 3 22 22 C 1.38920 * 119.64096 * 0.25953 * 20 4 3 23 23 N 1.48019 * 119.96172 * 179.97438 * 22 20 4 24 24 O 1.21801 * 119.99902 * 185.62173 * 23 22 20 25 25 O 1.21802 * 120.00062 * 5.62530 * 23 22 20 26 26 C 1.37989 * 120.06970 * 0.02562 * 22 20 4 27 27 H 1.08997 * 109.47277 * 270.25729 * 1 2 3 28 28 H 1.08993 * 109.47321 * 30.26518 * 1 2 3 29 29 H 1.09004 * 109.46750 * 150.26520 * 1 2 3 30 30 H 1.08002 * 120.03783 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.46889 * 64.76655 * 8 7 5 32 32 H 1.09005 * 109.46518 * 304.77393 * 8 7 5 33 33 H 0.96998 * 120.00264 * 355.22097 * 13 12 10 34 34 H 1.08995 * 117.49996 * 214.99760 * 18 9 8 35 35 H 1.09002 * 117.49338 * 0.02592 * 18 9 8 36 36 H 1.08996 * 117.49243 * 359.97438 * 19 9 8 37 37 H 1.08994 * 117.49485 * 144.97703 * 19 9 8 38 38 H 0.96990 * 120.00625 * 32.94928 * 21 20 4 39 39 H 0.97005 * 119.99256 * 212.95125 * 21 20 4 40 40 H 1.08002 * 119.78152 * 180.02562 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1920 1.1953 0.0000 4 6 3.5897 1.1978 -0.0059 5 6 4.3285 2.4720 -0.0117 6 8 5.5382 2.4723 -0.1268 7 8 3.6630 3.6375 0.1107 8 6 4.4404 4.8571 -0.0171 9 6 3.5451 6.0647 0.2672 10 6 2.3609 6.2264 -0.6507 11 1 2.4483 6.8267 -1.5442 12 6 1.1660 5.6079 -0.3497 13 7 1.0574 4.8831 0.7422 14 14 -0.2987 5.7996 -1.4931 15 1 -1.0946 6.9847 -1.0837 16 1 0.1814 5.9832 -2.8863 17 1 -1.1476 4.5834 -1.4183 18 6 3.3695 6.4857 1.7277 19 6 4.2192 7.3383 0.7819 20 6 4.2850 -0.0224 -0.0003 21 7 5.6733 -0.0345 -0.0002 22 6 3.5760 -1.2171 0.0056 23 7 4.3016 -2.5072 0.0109 24 8 3.6851 -3.5531 -0.0873 25 8 5.5152 -2.5230 0.1136 26 6 2.1962 -1.2023 0.0054 27 1 -0.3633 0.0046 1.0276 28 1 -0.3633 0.8875 -0.5179 29 1 -0.3633 -0.8924 -0.5097 30 1 1.6497 2.1292 0.0004 31 1 4.8382 4.9300 -1.0293 32 1 5.2641 4.8393 0.6966 33 1 1.8355 4.7262 1.2996 34 1 2.3976 6.8797 2.0246 35 1 3.8923 5.9025 2.4859 36 1 5.3003 7.3155 0.9182 37 1 3.8062 8.2930 0.4562 38 1 6.1644 0.6681 0.4534 39 1 6.1520 -0.7458 -0.4540 40 1 1.6498 -2.1338 0.0104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333192049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:43 Heat of formation + Delta-G solvation = -51.398640 kcal Electronic energy + Delta-G solvation = -27261.693153 eV Core-core repulsion = 23238.141042 eV Total energy + Delta-G solvation = -4023.552111 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.38481 -41.84970 -40.35867 -38.82048 -37.92430 -37.21805 -36.10048 -33.83225 -33.37277 -32.33732 -28.93182 -27.94009 -26.95305 -26.80027 -25.37621 -23.32780 -23.10932 -21.80157 -21.44378 -19.99882 -19.78739 -18.85301 -18.78806 -18.45687 -18.29239 -17.98844 -17.37281 -17.31802 -16.15562 -15.79935 -15.56993 -15.31385 -15.15295 -14.82344 -14.27451 -14.10109 -13.98232 -13.67486 -13.45298 -13.35581 -12.91744 -12.74684 -12.71279 -12.57765 -12.34707 -12.26438 -12.26035 -11.91188 -11.85168 -11.78308 -11.46833 -11.25553 -10.83358 -10.54810 -10.43078 -10.18712 -9.18077 -8.39799 -6.16949 -1.25796 -0.50474 0.20200 0.25604 1.22730 1.58733 1.60969 1.66228 1.83914 2.21999 2.41368 2.62905 3.07724 3.31830 3.34081 3.39377 3.57319 3.80258 3.81675 3.97049 4.06557 4.19023 4.29515 4.36263 4.46278 4.60688 4.64452 4.73222 4.79122 4.88375 4.98655 4.99110 5.16719 5.22343 5.24917 5.42702 5.44067 5.49022 5.95925 6.18085 6.33156 6.46010 6.55141 6.65538 6.84252 7.66340 9.00743 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.004339 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.564451 B = 6451.452011 C = 7888.967647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.135 4.135 3 C 0.036 3.964 4 C -0.210 4.210 5 C 0.507 3.493 6 O -0.538 6.538 7 O -0.323 6.323 8 C 0.116 3.884 9 C -0.017 4.017 10 C -0.598 4.598 11 H 0.036 0.964 12 C 0.002 3.998 13 N -0.904 5.904 14 Si 1.100 2.900 15 H -0.283 1.283 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.172 4.172 19 C -0.160 4.160 20 C 0.324 3.676 21 N -0.828 5.828 22 C -0.136 4.136 23 N 0.053 4.947 24 O -0.167 6.167 25 O -0.202 6.202 26 C 0.030 3.970 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.148 0.852 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.274 0.726 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.416 0.584 39 H 0.417 0.583 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -10.903 -0.473 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.017 3.983 4 C -0.217 4.217 5 C 0.354 3.646 6 O -0.431 6.431 7 O -0.238 6.238 8 C 0.043 3.957 9 C -0.017 4.017 10 C -0.636 4.636 11 H 0.054 0.946 12 C -0.203 4.203 13 N -0.538 5.538 14 Si 0.924 3.076 15 H -0.209 1.209 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.209 4.209 19 C -0.198 4.198 20 C 0.207 3.793 21 N -0.376 5.376 22 C -0.227 4.227 23 N 0.563 4.437 24 O -0.382 6.382 25 O -0.405 6.405 26 C 0.011 3.989 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.165 0.835 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.253 0.747 39 H 0.254 0.746 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.985 -10.656 -0.647 10.721 hybrid contribution 2.695 0.591 0.194 2.766 sum 1.710 -10.065 -0.453 10.219 Atomic orbital electron populations 1.20832 0.86804 1.04602 1.04120 1.19894 0.98816 0.89814 1.05242 1.21966 0.91761 1.00691 0.83885 1.18700 0.94182 0.88570 1.20250 1.21057 0.85677 0.85324 0.72517 1.90629 1.15450 1.88366 1.48653 1.86774 1.42032 1.14170 1.80792 1.22810 0.92238 0.80774 0.99907 1.19156 0.97285 0.90768 0.94521 1.21400 0.97297 1.35373 1.09494 0.94618 1.26660 1.02239 0.92779 0.98583 1.70673 1.34055 1.36300 1.12812 0.83133 0.73400 0.77144 0.73890 1.20934 1.21125 1.19755 1.22675 0.99886 1.04645 0.93744 1.22948 0.97799 0.95100 1.03918 1.17140 0.85864 0.89530 0.86761 1.43176 1.01843 1.33934 1.58645 1.20645 0.93330 0.81079 1.27631 1.43346 1.00828 1.02635 0.96849 1.94500 1.69068 1.21006 1.53617 1.94387 0.96634 1.93844 1.55601 1.21262 0.89372 1.01306 0.86982 0.89640 0.91262 0.88307 0.83459 0.92700 0.92517 0.91432 0.91493 0.90196 0.88362 0.89449 0.74741 0.74626 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.00 71.24 0.71 -1.17 16 2 C -0.13 -3.08 5.87 -19.89 -0.12 -3.19 16 3 C 0.04 1.09 9.25 22.53 0.21 1.30 16 4 C -0.21 -6.83 5.89 -19.99 -0.12 -6.95 16 5 C 0.51 19.41 7.85 70.20 0.55 19.96 16 6 O -0.54 -20.69 13.67 19.78 0.27 -20.42 16 7 O -0.32 -14.05 8.06 -56.80 -0.46 -14.51 16 8 C 0.12 5.01 5.40 71.98 0.39 5.39 16 9 C -0.02 -0.77 1.45 -52.92 -0.08 -0.85 16 10 C -0.60 -31.21 8.71 25.60 0.22 -30.99 16 11 H 0.04 1.92 7.81 -2.91 -0.02 1.89 16 12 C 0.00 0.08 5.38 84.65 0.46 0.53 16 13 N -0.90 -47.44 13.17 21.45 0.28 -47.16 16 14 Si 1.10 46.00 29.90 68.60 2.05 48.05 16 15 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.29 -11.60 7.11 99.48 0.71 -10.90 16 17 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 18 C -0.17 -7.44 8.19 30.62 0.25 -7.19 16 19 C -0.16 -6.32 9.95 30.63 0.30 -6.02 16 20 C 0.32 9.37 6.74 38.74 0.26 9.63 16 21 N -0.83 -22.48 7.49 -50.93 -0.38 -22.86 16 22 C -0.14 -3.54 6.86 36.48 0.25 -3.29 16 23 N 0.05 1.45 4.45 -46.21 -0.21 1.25 16 24 O -0.17 -4.49 18.45 18.89 0.35 -4.14 16 25 O -0.20 -5.73 16.00 18.88 0.30 -5.43 16 26 C 0.03 0.63 9.19 22.29 0.20 0.83 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 29 H 0.10 1.16 8.08 -2.38 -0.02 1.14 16 30 H 0.15 5.27 7.62 -2.91 -0.02 5.25 16 31 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.06 2.25 7.94 -2.38 -0.02 2.23 16 33 H 0.27 14.56 5.24 -92.71 -0.49 14.08 16 34 H 0.07 3.18 8.11 -2.39 -0.02 3.16 16 35 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.10 3.28 8.14 -2.39 -0.02 3.27 16 37 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 38 H 0.42 11.67 6.59 -92.72 -0.61 11.06 16 39 H 0.42 10.29 6.52 -92.70 -0.60 9.69 16 40 H 0.19 2.73 7.60 -2.91 -0.02 2.71 16 Total: -1.00 -58.79 347.57 5.89 -52.90 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.18 Total: 34.31 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 3.50 Total: -22.00 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -0.31 Total: -68.77 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: 0.46 Total: -44.50 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.05 Total: 48.05 kcal Total: -58.79 5.89 -52.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333192049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.505 kcal (2) G-P(sol) polarization free energy of solvation -58.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds