Wall clock time and date at job start Tue Mar 31 2020 13:24:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 S 1.81402 * 109.47130 * 2 1
4 4 C 1.76200 * 102.99919 * 179.97438 * 3 2 1
5 5 C 1.38998 * 120.07824 * 359.97438 * 4 3 2
6 6 C 1.38059 * 119.91545 * 180.02562 * 5 4 3
7 7 C 1.38328 * 120.08123 * 0.02562 * 6 5 4
8 8 C 1.38282 * 120.16238 * 0.02562 * 7 6 5
9 9 C 1.38106 * 120.07894 * 359.97125 * 8 7 6
10 10 C 1.50697 * 120.04099 * 180.02562 * 9 8 7
11 11 C 1.50701 * 109.47218 * 262.20107 * 10 9 8
12 12 O 1.20829 * 119.99751 * 5.70333 * 11 10 9
13 13 O 1.34222 * 120.00132 * 185.71217 * 11 10 9
14 14 C 1.45207 * 116.99993 * 185.33774 * 13 11 10
15 15 C 1.50696 * 112.84957 * 54.52627 * 14 13 11
16 16 H 1.07998 * 120.00003 * 245.22079 * 15 14 13
17 17 C 1.37876 * 120.00089 * 65.22019 * 15 14 13
18 18 N 1.31516 * 120.00012 * 185.66064 * 17 15 14
19 19 Si 1.86800 * 120.00110 * 5.66928 * 17 15 14
20 20 H 1.48501 * 109.47356 * 94.44993 * 19 17 15
21 21 H 1.48500 * 109.46941 * 214.45186 * 19 17 15
22 22 H 1.48504 * 109.46763 * 334.44962 * 19 17 15
23 23 C 1.53777 * 113.61187 * 283.21827 * 14 13 11
24 24 C 1.53780 * 87.08506 * 220.01878 * 23 14 13
25 25 C 1.53783 * 113.61435 * 185.72330 * 14 13 11
26 26 H 1.08997 * 109.46920 * 179.97438 * 1 2 3
27 27 H 1.08999 * 109.47170 * 300.00428 * 1 2 3
28 28 H 1.09006 * 109.46632 * 60.00125 * 1 2 3
29 29 H 1.08999 * 109.47170 * 239.99572 * 2 1 3
30 30 H 1.09006 * 109.46632 * 119.99875 * 2 1 3
31 31 H 1.07997 * 120.04045 * 0.04680 * 5 4 3
32 32 H 1.08002 * 119.95877 * 180.29835 * 6 5 4
33 33 H 1.07997 * 119.91696 * 179.97438 * 7 6 5
34 34 H 1.07997 * 119.96306 * 179.97438 * 8 7 6
35 35 H 1.09001 * 109.46986 * 22.19540 * 10 9 8
36 36 H 1.09000 * 109.47425 * 142.20016 * 10 9 8
37 37 H 0.97005 * 120.00040 * 179.97438 * 18 17 15
38 38 H 1.08999 * 113.61650 * 334.56803 * 23 14 13
39 39 H 1.09003 * 113.61577 * 105.47005 * 23 14 13
40 40 H 1.08993 * 113.61531 * 270.88790 * 24 23 14
41 41 H 1.08993 * 113.69220 * 139.98691 * 24 23 14
42 42 H 1.08994 * 113.61257 * 254.52787 * 25 14 13
43 43 H 1.09003 * 113.61344 * 25.34569 * 25 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 16 2.1348 1.7103 0.0000
4 6 3.8855 1.5117 0.0008
5 6 4.4422 0.2380 0.0017
6 6 5.8144 0.0863 0.0029
7 6 6.6351 1.1998 0.0036
8 6 6.0848 2.4684 0.0037
9 6 4.7130 2.6279 0.0025
10 6 4.1143 4.0109 0.0020
11 6 3.7366 4.3952 1.4094
12 8 4.0262 3.6706 2.3319
13 8 3.0783 5.5423 1.6381
14 6 2.8518 5.9072 3.0252
15 6 4.1220 5.9453 3.8352
16 1 4.2694 5.2424 4.6418
17 6 5.0960 6.8774 3.5465
18 7 6.2492 6.8405 4.1777
19 14 4.7776 8.1930 2.2591
20 1 4.2791 9.4245 2.9226
21 1 6.0399 8.4955 1.5379
22 1 3.7605 7.7046 1.2935
23 6 1.7165 5.1138 3.6933
24 6 1.3047 6.4290 4.3755
25 6 1.9734 7.1576 3.1978
26 1 -0.3633 -1.0276 -0.0005
27 1 -0.3633 0.5139 0.8899
28 1 -0.3633 0.5139 -0.8901
29 1 1.8934 -0.5139 -0.8899
30 1 1.8934 -0.5139 0.8901
31 1 3.8020 -0.6318 0.0012
32 1 6.2476 -0.9030 -0.0013
33 1 7.7082 1.0780 0.0049
34 1 6.7286 3.3356 0.0047
35 1 4.8435 4.7223 -0.3855
36 1 3.2253 4.0218 -0.6286
37 1 6.9346 7.4962 3.9743
38 1 0.9748 4.7361 2.9895
39 1 2.0671 4.3519 4.3895
40 1 1.7998 6.5986 5.3316
41 1 0.2261 6.5777 4.4251
42 1 2.5315 8.0457 3.4939
43 1 1.3030 7.3395 2.3578
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001344898729.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:24:56
Heat of formation + Delta-G solvation = -37.645284 kcal
Electronic energy + Delta-G solvation = -25274.206346 eV
Core-core repulsion = 21797.543840 eV
Total energy + Delta-G solvation = -3476.662506 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.123 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-39.71317 -38.86768 -37.15419 -34.33150 -33.26506 -32.50190 -32.29109 -30.93456
-27.83961 -26.41506 -24.88625 -24.01498 -23.01647 -22.72084 -21.52843 -19.77819
-18.52281 -17.31228 -17.07836 -16.21294 -15.66880 -15.56762 -15.34491 -15.04406
-14.98889 -14.89701 -14.19674 -13.99756 -13.73759 -13.16858 -13.01853 -12.80889
-12.48578 -12.34159 -12.25043 -11.95610 -11.67939 -11.66576 -11.40538 -11.26261
-10.94930 -10.94614 -10.85793 -10.52206 -10.10467 -10.01544 -9.91061 -9.75732
-9.59103 -9.35202 -8.96526 -8.71004 -8.65057 -8.47661 -7.27467 -6.16632
-4.21243 1.33459 1.45388 1.55843 2.47582 3.25874 3.32361 3.48927
3.53255 3.67553 4.14289 4.40079 4.70498 4.74308 4.82681 4.88546
5.10471 5.15817 5.17100 5.38488 5.47829 5.52499 5.56006 5.57641
5.58083 5.65959 5.73183 5.78592 5.86304 5.92386 5.97189 6.09952
6.28531 6.34233 6.44154 6.46602 6.54889 6.65479 6.69168 6.89789
7.00355 7.01652 7.32872 7.55235 7.93390 8.47529 8.92792 9.15171
9.44843 10.94010
Molecular weight = 320.12amu
Principal moments of inertia in cm(-1)
A = 0.013774 B = 0.005123 C = 0.004132
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2032.308354 B = 5464.273185 C = 6774.482096
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.117 4.117
3 S -0.107 6.107
4 C -0.069 4.069
5 C -0.136 4.136
6 C -0.105 4.105
7 C -0.123 4.123
8 C -0.084 4.084
9 C -0.042 4.042
10 C -0.088 4.088
11 C 0.465 3.535
12 O -0.476 6.476
13 O -0.372 6.372
14 C 0.201 3.799
15 C -0.499 4.499
16 H 0.084 0.916
17 C 0.082 3.918
18 N -0.880 5.880
19 Si 0.858 3.142
20 H -0.278 1.278
21 H -0.292 1.292
22 H -0.234 1.234
23 C -0.144 4.144
24 C -0.125 4.125
25 C -0.132 4.132
26 H 0.071 0.929
27 H 0.067 0.933
28 H 0.065 0.935
29 H 0.084 0.916
30 H 0.086 0.914
31 H 0.120 0.880
32 H 0.122 0.878
33 H 0.124 0.876
34 H 0.128 0.872
35 H 0.107 0.893
36 H 0.104 0.896
37 H 0.265 0.735
38 H 0.065 0.935
39 H 0.067 0.933
40 H 0.085 0.915
41 H 0.056 0.944
42 H 0.066 0.934
43 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.049 -11.416 -11.546 17.701
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.265 4.265
3 S 0.137 5.863
4 C -0.182 4.182
5 C -0.160 4.160
6 C -0.124 4.124
7 C -0.144 4.144
8 C -0.104 4.104
9 C -0.048 4.048
10 C -0.127 4.127
11 C 0.305 3.695
12 O -0.361 6.361
13 O -0.291 6.291
14 C 0.167 3.833
15 C -0.536 4.536
16 H 0.102 0.898
17 C -0.123 4.123
18 N -0.517 5.517
19 Si 0.684 3.316
20 H -0.205 1.205
21 H -0.218 1.218
22 H -0.157 1.157
23 C -0.182 4.182
24 C -0.162 4.162
25 C -0.170 4.170
26 H 0.090 0.910
27 H 0.086 0.914
28 H 0.084 0.916
29 H 0.103 0.897
30 H 0.105 0.895
31 H 0.138 0.862
32 H 0.140 0.860
33 H 0.142 0.858
34 H 0.146 0.854
35 H 0.125 0.875
36 H 0.122 0.878
37 H 0.075 0.925
38 H 0.083 0.917
39 H 0.086 0.914
40 H 0.103 0.897
41 H 0.075 0.925
42 H 0.085 0.915
43 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -7.638 -10.592 -11.195 17.201
hybrid contribution 1.049 -0.397 -0.449 1.208
sum -6.590 -10.989 -11.644 17.314
Atomic orbital electron populations
1.21501 0.91911 1.02660 1.03417 1.23620 1.00465 0.97159 1.05291
1.85673 0.97974 1.10532 1.92112 1.21512 0.96475 0.95887 1.04287
1.21013 0.95849 0.95061 1.04048 1.20960 0.92988 0.98655 0.99831
1.21098 0.99797 0.92336 1.01149 1.21021 0.93669 0.97872 0.97820
1.18967 0.93077 0.92471 1.00283 1.20396 1.02788 0.94229 0.95262
1.22411 0.76435 0.80493 0.90187 1.90621 1.49106 1.51293 1.45103
1.86504 1.68381 1.38536 1.35652 1.21605 0.93899 0.91583 0.76191
1.20794 0.98843 1.17414 1.16560 0.89784 1.24998 0.94475 0.97337
0.95450 1.69936 1.04753 1.35297 1.41746 0.87165 0.78783 0.82176
0.83440 1.20467 1.21846 1.15667 1.23304 0.98254 0.97046 0.99571
1.22477 0.98303 0.97195 0.98239 1.23271 0.98261 0.97918 0.97547
0.90990 0.91379 0.91625 0.89722 0.89495 0.86208 0.86037 0.85827
0.85376 0.87525 0.87797 0.92473 0.91677 0.91431 0.89672 0.92511
0.91527 0.91287
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.18 9.92 37.16 0.37 -0.81 16
2 C -0.12 -1.22 5.05 37.16 0.19 -1.03 16
3 S -0.11 -1.56 20.15 -107.50 -2.17 -3.72 16
4 C -0.07 -1.10 6.11 -39.03 -0.24 -1.33 16
5 C -0.14 -1.86 9.36 -39.37 -0.37 -2.23 16
6 C -0.10 -1.34 10.04 -39.61 -0.40 -1.74 16
7 C -0.12 -1.68 10.04 -39.53 -0.40 -2.08 16
8 C -0.08 -1.34 9.67 -39.61 -0.38 -1.72 16
9 C -0.04 -0.72 4.40 -104.41 -0.46 -1.18 16
10 C -0.09 -1.59 5.39 -29.04 -0.16 -1.74 16
11 C 0.46 10.65 7.34 36.01 0.26 10.92 16
12 O -0.48 -12.40 14.48 -18.75 -0.27 -12.67 16
13 O -0.37 -8.91 8.17 -39.24 -0.32 -9.23 16
14 C 0.20 4.92 0.25 -90.96 -0.02 4.89 16
15 C -0.50 -14.27 7.17 -34.44 -0.25 -14.52 16
16 H 0.08 2.70 8.05 -52.49 -0.42 2.27 16
17 C 0.08 2.37 5.47 -17.82 -0.10 2.28 16
18 N -0.88 -26.94 13.96 55.43 0.77 -26.17 16
19 Si 0.86 21.38 24.60 -169.99 -4.18 17.20 16
20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16
21 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16
22 H -0.23 -5.58 5.57 56.52 0.31 -5.27 16
23 C -0.14 -3.12 7.08 -25.92 -0.18 -3.30 16
24 C -0.12 -2.43 7.81 -25.92 -0.20 -2.63 16
25 C -0.13 -2.85 6.01 -25.92 -0.16 -3.00 16
26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16
27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
29 H 0.08 0.75 7.75 -51.92 -0.40 0.35 16
30 H 0.09 0.90 7.75 -51.92 -0.40 0.50 16
31 H 0.12 1.34 5.88 -52.49 -0.31 1.03 16
32 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16
33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16
34 H 0.13 1.91 8.05 -52.49 -0.42 1.49 16
35 H 0.11 1.73 8.03 -51.93 -0.42 1.31 16
36 H 0.10 1.66 7.15 -51.93 -0.37 1.29 16
37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16
38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
39 H 0.07 1.55 8.09 -51.93 -0.42 1.13 16
40 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16
41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
42 H 0.07 1.49 5.66 -51.93 -0.29 1.19 16
43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16
LS Contribution 360.08 15.07 5.43 5.43
Total: -1.00 -33.67 360.08 -9.72 -43.38
By element:
Atomic # 1 Polarization: 11.52 SS G_CDS: -6.49 Total: 5.03 kcal
Atomic # 6 Polarization: -16.75 SS G_CDS: -2.49 Total: -19.24 kcal
Atomic # 7 Polarization: -26.94 SS G_CDS: 0.77 Total: -26.17 kcal
Atomic # 8 Polarization: -21.31 SS G_CDS: -0.59 Total: -21.90 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -4.18 Total: 17.20 kcal
Atomic # 16 Polarization: -1.56 SS G_CDS: -2.17 Total: -3.72 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -33.67 -9.72 -43.38 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001344898729.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.737 kcal
(2) G-P(sol) polarization free energy of solvation -33.667 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.930 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.645 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds