Wall clock time and date at job start Tue Mar 31 2020 13:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.39228 * 2 1 4 4 C 1.54780 * 110.57357 * 122.41185 * 2 1 3 5 5 C 1.54492 * 102.04780 * 145.57625 * 4 2 1 6 6 H 1.09003 * 110.37043 * 103.65718 * 5 4 2 7 7 N 1.46501 * 110.36717 * 225.87477 * 5 4 2 8 8 C 1.34782 * 119.99632 * 203.46318 * 7 5 4 9 9 O 1.21578 * 120.00320 * 359.97438 * 8 7 5 10 10 N 1.34782 * 119.99322 * 179.97438 * 8 7 5 11 11 C 1.40032 * 119.99275 * 175.26971 * 10 8 7 12 12 C 1.38905 * 120.00148 * 35.79207 * 11 10 8 13 13 C 1.38011 * 119.99804 * 179.97438 * 12 11 10 14 14 C 1.38902 * 120.00223 * 359.97438 * 13 12 11 15 15 O 1.35783 * 120.00048 * 179.97438 * 14 13 12 16 16 C 1.34806 * 117.00027 * 5.85224 * 15 14 13 17 17 H 1.08002 * 119.99898 * 5.26018 * 16 15 14 18 18 C 1.38626 * 119.99848 * 185.26106 * 16 15 14 19 19 N 1.31571 * 120.00450 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99795 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47219 * 59.99892 * 20 18 16 22 22 H 1.48499 * 109.47249 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47318 * 300.00114 * 20 18 16 24 24 C 1.38905 * 119.99972 * 0.02562 * 14 13 12 25 25 C 1.38010 * 120.00084 * 359.97438 * 24 14 13 26 26 C 1.51329 * 104.92266 * 344.76610 * 5 4 2 27 27 O 1.20820 * 125.09491 * 177.63569 * 26 5 4 28 28 O 1.34068 * 109.81261 * 357.62762 * 26 5 4 29 29 H 1.08998 * 109.47267 * 180.97058 * 1 2 3 30 30 H 1.08998 * 109.47134 * 300.97132 * 1 2 3 31 31 H 1.09001 * 109.46928 * 60.97117 * 1 2 3 32 32 H 1.09001 * 110.86603 * 27.47072 * 4 2 1 33 33 H 1.08993 * 110.95839 * 263.72861 * 4 2 1 34 34 H 0.97003 * 120.00317 * 23.46059 * 7 5 4 35 35 H 0.96998 * 120.00270 * 355.27512 * 10 8 7 36 36 H 1.07999 * 120.00186 * 359.97438 * 12 11 10 37 37 H 1.07999 * 120.00223 * 179.71597 * 13 12 11 38 38 H 0.97002 * 119.99966 * 180.02562 * 19 18 16 39 39 H 1.08003 * 119.99968 * 180.02562 * 24 14 13 40 40 H 1.08003 * 120.00174 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0739 -0.7767 1.2233 5 6 3.3541 -1.4248 0.6507 6 1 4.2380 -0.8890 0.9966 7 7 3.4293 -2.8353 1.0396 8 6 4.6220 -3.4620 1.0743 9 8 5.6354 -2.8570 0.7825 10 7 4.6912 -4.7595 1.4326 11 6 5.9149 -5.4377 1.3736 12 6 7.0937 -4.7719 1.6843 13 6 8.2996 -5.4405 1.6267 14 6 8.3345 -6.7794 1.2585 15 8 9.5211 -7.4371 1.2013 16 6 10.6116 -6.7703 1.6296 17 1 10.5061 -5.7922 2.0752 18 6 11.8685 -7.3402 1.4979 19 7 11.9971 -8.5315 0.9546 20 14 13.3797 -6.4165 2.0920 21 1 13.2569 -6.1509 3.5479 22 1 14.5919 -7.2362 1.8395 23 1 13.4915 -5.1284 1.3617 24 6 7.1557 -7.4452 0.9478 25 6 5.9498 -6.7767 1.0055 26 6 3.2162 -1.2992 -0.8511 27 8 4.0427 -1.6561 -1.6568 28 8 2.0393 -0.7327 -1.1535 29 1 -0.3634 -1.0275 0.0174 30 1 -0.3633 0.5288 0.8811 31 1 -0.3633 0.4987 -0.8986 32 1 1.3643 -1.5384 1.5465 33 1 2.3150 -0.0973 2.0408 34 1 2.6207 -3.3181 1.2720 35 1 3.8934 -5.2234 1.7312 36 1 7.0665 -3.7310 1.9710 37 1 9.2167 -4.9217 1.8638 38 1 12.8766 -8.9303 0.8628 39 1 7.1828 -8.4864 0.6620 40 1 5.0332 -7.2945 0.7643 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365027767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:35 Heat of formation + Delta-G solvation = -96.289071 kcal Electronic energy + Delta-G solvation = -25858.350428 eV Core-core repulsion = 21832.851722 eV Total energy + Delta-G solvation = -4025.498706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59015 -40.14924 -38.70923 -37.83908 -36.70394 -35.15609 -33.99020 -32.94272 -32.12647 -30.23811 -30.10724 -27.65697 -25.36458 -25.04689 -22.68410 -22.56563 -21.98022 -21.00757 -20.49432 -18.77453 -18.03804 -17.71510 -17.49753 -17.01533 -16.75990 -16.03717 -15.39365 -15.06195 -14.56011 -14.49379 -14.43132 -14.19576 -13.84995 -13.60157 -13.51245 -13.45236 -13.08886 -12.81276 -12.58150 -12.54465 -12.37319 -11.79033 -11.66509 -11.51475 -11.46485 -11.05437 -10.97714 -10.88796 -10.76093 -10.42015 -10.04233 -9.59734 -9.29751 -9.20297 -8.64877 -8.14721 -6.88746 -6.39608 -3.97093 1.66513 2.18467 2.28419 2.46892 2.90575 3.14540 3.18412 3.21752 3.22460 3.59286 3.68472 3.93180 4.02300 4.18234 4.21526 4.51637 4.62374 4.68437 4.95487 5.09611 5.11398 5.15724 5.25685 5.29762 5.47733 5.72080 5.78131 5.99825 6.16321 6.21513 6.32853 6.40084 6.62040 6.77971 6.99002 7.13216 7.18247 7.24902 7.36460 7.49345 7.83508 7.95171 8.05558 8.59760 9.06160 9.76076 10.78362 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.002335 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.732135 B =11987.688952 C =12418.735456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 H 0.100 0.900 4 C -0.158 4.158 5 C 0.109 3.891 6 H 0.132 0.868 7 N -0.732 5.732 8 C 0.699 3.301 9 O -0.558 6.558 10 N -0.670 5.670 11 C 0.050 3.950 12 C -0.062 4.062 13 C -0.219 4.219 14 C 0.146 3.854 15 O -0.177 6.177 16 C -0.389 4.389 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.178 4.178 25 C -0.093 4.093 26 C 0.463 3.537 27 O -0.423 6.423 28 O -0.346 6.346 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.400 0.600 35 H 0.398 0.602 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.270 0.730 39 H 0.122 0.878 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.230 15.568 4.180 29.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 H 0.118 0.882 4 C -0.196 4.196 5 C 0.001 3.999 6 H 0.150 0.850 7 N -0.391 5.391 8 C 0.400 3.600 9 O -0.433 6.433 10 N -0.318 5.318 11 C -0.043 4.043 12 C -0.082 4.082 13 C -0.239 4.239 14 C 0.092 3.908 15 O -0.080 6.080 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.198 4.198 25 C -0.113 4.113 26 C 0.298 3.702 27 O -0.301 6.301 28 O -0.263 6.263 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.235 0.765 35 H 0.232 0.768 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.140 0.860 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.720 15.563 3.152 28.544 hybrid contribution -0.059 0.079 0.560 0.569 sum -23.778 15.642 3.712 28.703 Atomic orbital electron populations 1.21910 0.91463 1.03811 1.03662 1.23733 0.96527 0.95529 0.81875 0.88217 1.23407 0.96121 1.01327 0.98727 1.21981 1.01659 0.84110 0.92181 0.85019 1.44821 1.08710 1.10564 1.75018 1.15942 0.83571 0.82109 0.78406 1.90979 1.33204 1.65107 1.54001 1.42206 1.10869 1.09538 1.69165 1.17013 0.84093 0.92063 1.11091 1.20848 0.90812 0.99478 0.97082 1.21105 0.98179 0.94814 1.09832 1.19419 0.87548 0.90622 0.93223 1.83986 1.12005 1.39546 1.72500 1.21271 0.83019 1.02877 1.39409 0.89126 1.25279 0.98163 0.96299 0.96820 1.70036 1.24546 1.14442 1.40831 0.85787 0.79520 0.78963 0.79212 1.19522 1.20328 1.19472 1.19966 0.89716 1.00236 1.09886 1.20326 0.97129 0.93045 1.00827 1.23618 0.79603 0.75243 0.91714 1.90802 1.38672 1.43845 1.56825 1.87109 1.35349 1.63444 1.40417 0.91219 0.89826 0.90907 0.88314 0.87260 0.76462 0.76823 0.85674 0.85216 0.92025 0.86047 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.39 9.58 37.16 0.36 -0.03 16 2 C 0.08 0.35 4.17 -25.79 -0.11 0.25 16 3 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 4 C -0.16 -0.56 6.47 -25.01 -0.16 -0.72 16 5 C 0.11 0.96 3.30 -67.99 -0.22 0.74 16 6 H 0.13 1.29 7.60 -51.93 -0.39 0.90 16 7 N -0.73 -6.99 5.14 -58.73 -0.30 -7.29 16 8 C 0.70 10.35 8.40 -86.91 -0.73 9.62 16 9 O -0.56 -10.96 13.49 5.30 0.07 -10.89 16 10 N -0.67 -9.31 5.34 -14.18 -0.08 -9.39 16 11 C 0.05 0.92 6.29 -83.62 -0.53 0.39 16 12 C -0.06 -1.30 8.69 -39.42 -0.34 -1.64 16 13 C -0.22 -5.11 9.12 -39.42 -0.36 -5.47 16 14 C 0.15 3.64 6.65 -39.09 -0.26 3.38 16 15 O -0.18 -5.16 9.75 0.01 0.00 -5.16 16 16 C -0.39 -11.16 9.44 30.88 0.29 -10.87 16 17 H 0.09 2.42 5.29 -52.49 -0.28 2.14 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 20 Si 0.94 21.09 29.55 -169.99 -5.02 16.06 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 C -0.18 -3.81 9.99 -39.42 -0.39 -4.20 16 25 C -0.09 -1.67 9.96 -39.42 -0.39 -2.06 16 26 C 0.46 5.75 8.21 36.31 0.30 6.05 16 27 O -0.42 -7.59 18.00 -18.41 -0.33 -7.93 16 28 O -0.35 -3.37 10.76 -38.49 -0.41 -3.79 16 29 H 0.07 0.19 8.13 -51.93 -0.42 -0.23 16 30 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.19 7.48 -51.93 -0.39 -0.20 16 33 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.40 2.27 8.35 -40.82 -0.34 1.93 16 35 H 0.40 3.78 8.84 -40.82 -0.36 3.42 16 36 H 0.13 2.59 6.27 -52.49 -0.33 2.26 16 37 H 0.13 3.04 5.71 -52.49 -0.30 2.74 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -38.85 347.44 -7.21 -46.06 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.48 Total: 5.65 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.65 Total: -3.58 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.38 Total: -41.68 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.67 Total: -27.75 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -38.85 -7.21 -46.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365027767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.228 kcal (2) G-P(sol) polarization free energy of solvation -38.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds