Wall clock time and date at job start Tue Mar 31 2020 13:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.39228 * 2 1 4 4 C 1.54780 * 110.57357 * 122.41185 * 2 1 3 5 5 C 1.54492 * 102.04780 * 145.57625 * 4 2 1 6 6 H 1.09003 * 110.37043 * 103.65718 * 5 4 2 7 7 N 1.46501 * 110.36717 * 225.87477 * 5 4 2 8 8 C 1.34782 * 119.99632 * 203.46318 * 7 5 4 9 9 O 1.21578 * 120.00320 * 359.97438 * 8 7 5 10 10 N 1.34782 * 119.99322 * 179.97438 * 8 7 5 11 11 C 1.40032 * 119.99275 * 175.26971 * 10 8 7 12 12 C 1.38905 * 120.00148 * 35.79207 * 11 10 8 13 13 C 1.38011 * 119.99804 * 179.97438 * 12 11 10 14 14 C 1.38902 * 120.00223 * 359.97438 * 13 12 11 15 15 O 1.35783 * 120.00048 * 179.97438 * 14 13 12 16 16 C 1.34806 * 117.00027 * 5.85224 * 15 14 13 17 17 H 1.08002 * 119.99898 * 5.26018 * 16 15 14 18 18 C 1.38626 * 119.99848 * 185.26106 * 16 15 14 19 19 N 1.31571 * 120.00450 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99795 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47219 * 59.99892 * 20 18 16 22 22 H 1.48499 * 109.47249 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47318 * 300.00114 * 20 18 16 24 24 C 1.38905 * 119.99972 * 0.02562 * 14 13 12 25 25 C 1.38010 * 120.00084 * 359.97438 * 24 14 13 26 26 C 1.51329 * 104.92266 * 344.76610 * 5 4 2 27 27 O 1.20820 * 125.09491 * 177.63569 * 26 5 4 28 28 O 1.34068 * 109.81261 * 357.62762 * 26 5 4 29 29 H 1.08998 * 109.47267 * 180.97058 * 1 2 3 30 30 H 1.08998 * 109.47134 * 300.97132 * 1 2 3 31 31 H 1.09001 * 109.46928 * 60.97117 * 1 2 3 32 32 H 1.09001 * 110.86603 * 27.47072 * 4 2 1 33 33 H 1.08993 * 110.95839 * 263.72861 * 4 2 1 34 34 H 0.97003 * 120.00317 * 23.46059 * 7 5 4 35 35 H 0.96998 * 120.00270 * 355.27512 * 10 8 7 36 36 H 1.07999 * 120.00186 * 359.97438 * 12 11 10 37 37 H 1.07999 * 120.00223 * 179.71597 * 13 12 11 38 38 H 0.97002 * 119.99966 * 180.02562 * 19 18 16 39 39 H 1.08003 * 119.99968 * 180.02562 * 24 14 13 40 40 H 1.08003 * 120.00174 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0739 -0.7767 1.2233 5 6 3.3541 -1.4248 0.6507 6 1 4.2380 -0.8890 0.9966 7 7 3.4293 -2.8353 1.0396 8 6 4.6220 -3.4620 1.0743 9 8 5.6354 -2.8570 0.7825 10 7 4.6912 -4.7595 1.4326 11 6 5.9149 -5.4377 1.3736 12 6 7.0937 -4.7719 1.6843 13 6 8.2996 -5.4405 1.6267 14 6 8.3345 -6.7794 1.2585 15 8 9.5211 -7.4371 1.2013 16 6 10.6116 -6.7703 1.6296 17 1 10.5061 -5.7922 2.0752 18 6 11.8685 -7.3402 1.4979 19 7 11.9971 -8.5315 0.9546 20 14 13.3797 -6.4165 2.0920 21 1 13.2569 -6.1509 3.5479 22 1 14.5919 -7.2362 1.8395 23 1 13.4915 -5.1284 1.3617 24 6 7.1557 -7.4452 0.9478 25 6 5.9498 -6.7767 1.0055 26 6 3.2162 -1.2992 -0.8511 27 8 4.0427 -1.6561 -1.6568 28 8 2.0393 -0.7327 -1.1535 29 1 -0.3634 -1.0275 0.0174 30 1 -0.3633 0.5288 0.8811 31 1 -0.3633 0.4987 -0.8986 32 1 1.3643 -1.5384 1.5465 33 1 2.3150 -0.0973 2.0408 34 1 2.6207 -3.3181 1.2720 35 1 3.8934 -5.2234 1.7312 36 1 7.0665 -3.7310 1.9710 37 1 9.2167 -4.9217 1.8638 38 1 12.8766 -8.9303 0.8628 39 1 7.1828 -8.4864 0.6620 40 1 5.0332 -7.2945 0.7643 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365027767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:34 Heat of formation + Delta-G solvation = -126.074350 kcal Electronic energy + Delta-G solvation = -25859.642015 eV Core-core repulsion = 21832.851722 eV Total energy + Delta-G solvation = -4026.790293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.41451 -41.43545 -40.40555 -38.81748 -38.33712 -36.16252 -35.45322 -34.18303 -33.45201 -31.84867 -30.97000 -29.15181 -27.25108 -25.76196 -24.10738 -23.52428 -23.09588 -22.23748 -21.56090 -20.14427 -19.61429 -19.05475 -18.40073 -18.31295 -17.93118 -17.21475 -16.60666 -16.31578 -16.17426 -15.85106 -15.54375 -15.38859 -15.27246 -15.02615 -14.76864 -14.61956 -14.17655 -13.77910 -13.59456 -13.47060 -13.26056 -13.19280 -13.01786 -12.89464 -12.67338 -12.49885 -12.15085 -12.10349 -11.91539 -11.60252 -11.45283 -11.30400 -10.99291 -10.56296 -10.22225 -9.82887 -8.59767 -8.46630 -6.13159 0.52989 0.58311 0.73765 1.34470 1.44623 1.50419 1.51965 1.95405 2.18041 2.19541 2.81395 2.90572 3.08431 3.16728 3.20485 3.51911 3.66572 3.88536 4.09516 4.13623 4.17814 4.25109 4.49337 4.65256 4.70611 4.73026 4.81246 4.91222 5.00919 5.06465 5.12841 5.18701 5.32450 5.35265 5.40868 5.59995 5.71189 5.72221 5.89868 6.02589 6.18637 6.32670 6.94096 6.97969 7.44749 7.77682 8.76100 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.002335 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.732135 B =11987.688952 C =12418.735456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 H 0.116 0.884 4 C -0.136 4.136 5 C 0.108 3.892 6 H 0.121 0.879 7 N -0.707 5.707 8 C 0.695 3.305 9 O -0.609 6.609 10 N -0.657 5.657 11 C 0.078 3.922 12 C -0.074 4.074 13 C -0.229 4.229 14 C 0.105 3.895 15 O -0.227 6.227 16 C -0.413 4.413 17 H 0.097 0.903 18 C -0.022 4.022 19 N -0.918 5.918 20 Si 1.017 2.983 21 H -0.256 1.256 22 H -0.269 1.269 23 H -0.262 1.262 24 C -0.180 4.180 25 C -0.078 4.078 26 C 0.462 3.538 27 O -0.495 6.495 28 O -0.361 6.361 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.141 0.859 34 H 0.424 0.576 35 H 0.425 0.575 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.273 0.727 39 H 0.130 0.870 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.197 17.356 5.944 34.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.134 0.866 4 C -0.174 4.174 5 C -0.001 4.001 6 H 0.139 0.861 7 N -0.367 5.367 8 C 0.396 3.604 9 O -0.487 6.487 10 N -0.307 5.307 11 C -0.016 4.016 12 C -0.094 4.094 13 C -0.249 4.249 14 C 0.055 3.945 15 O -0.134 6.134 16 C -0.489 4.489 17 H 0.114 0.886 18 C -0.220 4.220 19 N -0.556 5.556 20 Si 0.836 3.164 21 H -0.180 1.180 22 H -0.193 1.193 23 H -0.187 1.187 24 C -0.200 4.200 25 C -0.098 4.098 26 C 0.301 3.699 27 O -0.379 6.379 28 O -0.277 6.277 29 H 0.089 0.911 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.144 0.856 33 H 0.159 0.841 34 H 0.263 0.737 35 H 0.264 0.736 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.148 0.852 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -27.873 17.388 4.963 33.225 hybrid contribution 0.684 -0.278 -0.017 0.738 sum -27.190 17.110 4.947 32.504 Atomic orbital electron populations 1.21968 0.89583 1.04274 1.04711 1.24257 0.97904 0.95885 0.80495 0.86586 1.23514 0.93283 1.01901 0.98663 1.22168 1.04271 0.83618 0.90006 0.86127 1.44572 1.07892 1.10971 1.73293 1.16190 0.84350 0.82006 0.77881 1.90967 1.35569 1.66235 1.55956 1.41973 1.10269 1.09425 1.69017 1.17132 0.85017 0.92249 1.07222 1.20934 0.91093 0.99623 0.97797 1.21101 0.98861 0.94575 1.10358 1.19950 0.87621 0.91669 0.95308 1.83943 1.13223 1.41059 1.75153 1.21713 0.83773 1.03310 1.40130 0.88607 1.26546 1.01320 0.97270 0.96834 1.70173 1.25476 1.16552 1.43410 0.84682 0.74938 0.77567 0.79242 1.18013 1.19294 1.18694 1.20313 0.89758 1.00873 1.09043 1.20755 0.97725 0.92732 0.98548 1.24231 0.79262 0.73686 0.92734 1.90759 1.41282 1.46991 1.58914 1.87088 1.34008 1.63212 1.43440 0.91124 0.86867 0.91699 0.85591 0.84050 0.73682 0.73617 0.85572 0.86620 0.91797 0.85249 0.81560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.15 9.58 71.98 0.69 0.54 16 2 C 0.07 0.37 4.17 31.20 0.13 0.50 16 3 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 4 C -0.14 -0.30 6.47 31.71 0.21 -0.09 16 5 C 0.11 1.63 3.30 44.95 0.15 1.77 16 6 H 0.12 2.19 7.60 -2.39 -0.02 2.17 16 7 N -0.71 -11.16 5.14 -457.99 -2.35 -13.51 16 8 C 0.70 18.98 8.40 179.05 1.50 20.48 16 9 O -0.61 -23.64 13.49 -3.96 -0.05 -23.70 16 10 N -0.66 -15.94 5.34 -317.04 -1.69 -17.63 16 11 C 0.08 2.69 6.29 38.15 0.24 2.93 16 12 C -0.07 -3.10 8.69 22.38 0.19 -2.90 16 13 C -0.23 -11.12 9.12 22.38 0.20 -10.91 16 14 C 0.11 5.47 6.65 22.59 0.15 5.62 16 15 O -0.23 -14.08 9.75 -22.86 -0.22 -14.30 16 16 C -0.41 -25.05 9.44 67.91 0.64 -24.41 16 17 H 0.10 5.44 5.29 -2.91 -0.02 5.42 16 18 C -0.02 -1.30 5.49 84.82 0.47 -0.83 16 19 N -0.92 -57.55 13.67 21.61 0.30 -57.25 16 20 Si 1.02 44.67 29.55 68.60 2.03 46.70 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 24 C -0.18 -7.65 9.99 22.38 0.22 -7.43 16 25 C -0.08 -2.56 9.96 22.38 0.22 -2.34 16 26 C 0.46 11.19 8.21 71.44 0.59 11.78 16 27 O -0.50 -18.43 18.00 21.66 0.39 -18.04 16 28 O -0.36 -6.47 10.76 -50.20 -0.54 -7.01 16 29 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 30 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.13 -0.33 7.48 -2.39 -0.02 -0.35 16 33 H 0.14 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.42 2.72 8.35 -92.71 -0.77 1.95 16 35 H 0.42 5.87 8.84 -92.71 -0.82 5.05 16 36 H 0.13 5.26 6.27 -2.91 -0.02 5.24 16 37 H 0.12 5.79 5.71 -2.91 -0.02 5.78 16 38 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.13 5.22 8.06 -2.91 -0.02 5.19 16 40 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -95.02 347.44 2.98 -92.04 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.47 Total: 18.01 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 5.61 Total: -5.30 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -3.75 Total: -88.39 kcal Atomic # 8 Polarization: -62.63 SS G_CDS: -0.43 Total: -63.05 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -95.02 2.98 -92.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365027767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.039 kcal (2) G-P(sol) polarization free energy of solvation -95.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds