Wall clock time and date at job start Tue Mar 31 2020 13:02:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08999 * 110.28093 * 2 1
4 4 C 1.54359 * 110.32264 * 122.11978 * 2 1 3
5 5 C 1.54472 * 103.04431 * 136.71983 * 4 2 1
6 6 H 1.08995 * 110.40713 * 119.27926 * 5 4 2
7 7 N 1.46506 * 110.40327 * 241.58756 * 5 4 2
8 8 C 1.34778 * 119.99665 * 203.36730 * 7 5 4
9 9 O 1.21587 * 119.99998 * 0.26734 * 8 7 5
10 10 N 1.34779 * 119.99811 * 179.97438 * 8 7 5
11 11 C 1.39946 * 119.99600 * 174.82986 * 10 8 7
12 12 C 1.38951 * 120.03798 * 326.19270 * 11 10 8
13 13 C 1.38168 * 120.06655 * 179.71930 * 12 11 10
14 14 C 1.38173 * 120.13591 * 0.55753 * 13 12 11
15 15 C 1.38907 * 120.06813 * 359.71703 * 14 13 12
16 16 O 1.35753 * 120.03432 * 179.97438 * 15 14 13
17 17 C 1.34834 * 117.00120 * 185.92883 * 16 15 14
18 18 H 1.07999 * 119.99871 * 5.41972 * 17 16 15
19 19 C 1.38647 * 119.99688 * 185.41490 * 17 16 15
20 20 N 1.31559 * 120.00273 * 0.02562 * 19 17 16
21 21 Si 1.86805 * 119.99940 * 180.02562 * 19 17 16
22 22 H 1.48503 * 109.47172 * 59.99423 * 21 19 17
23 23 H 1.48501 * 109.47097 * 180.02562 * 21 19 17
24 24 H 1.48507 * 109.46632 * 300.00057 * 21 19 17
25 25 C 1.38709 * 120.03144 * 146.46572 * 11 10 8
26 26 C 1.51504 * 104.73068 * 0.42869 * 5 4 2
27 27 O 1.20829 * 125.94897 * 159.51662 * 26 5 4
28 28 O 1.34852 * 107.95488 * 339.58165 * 26 5 4
29 29 H 1.09006 * 109.46667 * 297.87717 * 1 2 3
30 30 H 1.08996 * 109.47568 * 57.87696 * 1 2 3
31 31 H 1.09001 * 109.47020 * 177.88498 * 1 2 3
32 32 H 1.09000 * 110.70224 * 18.33271 * 4 2 1
33 33 H 1.09001 * 110.85476 * 255.17581 * 4 2 1
34 34 H 0.96991 * 120.00118 * 23.36692 * 7 5 4
35 35 H 0.96997 * 119.99859 * 354.83252 * 10 8 7
36 36 H 1.07995 * 119.97101 * 359.97438 * 12 11 10
37 37 H 1.07999 * 119.93135 * 180.29577 * 13 12 11
38 38 H 1.07996 * 119.96301 * 179.70302 * 14 13 12
39 39 H 0.97005 * 119.99899 * 180.02562 * 20 19 17
40 40 H 1.08002 * 120.06996 * 359.97438 * 25 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9079 1.0224 0.0000
4 6 2.0662 -0.7696 1.2259
5 6 3.2146 -1.6149 0.6321
6 1 4.1621 -1.3531 1.1030
7 7 2.9383 -3.0435 0.8026
8 6 3.9530 -3.9306 0.8042
9 8 5.0980 -3.5448 0.6690
10 7 3.6988 -5.2448 0.9616
11 6 4.7381 -6.1761 0.8554
12 6 5.7834 -5.9534 -0.0326
13 6 6.8127 -6.8696 -0.1338
14 6 6.8003 -8.0151 0.6388
15 6 5.7552 -8.2461 1.5242
16 8 5.7434 -9.3720 2.2825
17 6 4.6432 -9.5958 3.0291
18 1 3.7881 -8.9420 2.9401
19 6 4.6095 -10.6651 3.9109
20 7 5.6513 -11.4611 4.0196
21 14 3.0850 -10.9755 4.9448
22 1 1.9210 -11.2094 4.0527
23 1 3.3017 -12.1700 5.8001
24 1 2.8205 -9.7934 5.8039
25 6 4.7228 -7.3250 1.6323
26 6 3.2381 -1.2535 -0.8390
27 8 4.1703 -1.4068 -1.5924
28 8 2.0369 -0.7299 -1.1577
29 1 -0.3633 0.4806 0.9085
30 1 -0.3634 0.5464 -0.8703
31 1 -0.3633 -1.0270 -0.0379
32 1 1.2924 -1.4121 1.6462
33 1 2.4453 -0.0810 1.9810
34 1 2.0252 -3.3509 0.9144
35 1 2.7957 -5.5452 1.1485
36 1 5.7935 -5.0614 -0.6413
37 1 7.6265 -6.6920 -0.8212
38 1 7.6038 -8.7316 0.5539
39 1 5.6276 -12.2095 4.6364
40 1 3.9094 -7.5023 2.3203
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001434684407.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:02:47
Heat of formation + Delta-G solvation = -96.156878 kcal
Electronic energy + Delta-G solvation = -26080.598760 eV
Core-core repulsion = 22055.105786 eV
Total energy + Delta-G solvation = -4025.492974 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.125 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.59785 -40.20983 -38.72965 -37.91607 -36.63919 -35.13835 -34.27250 -32.99603
-32.22632 -30.39712 -29.12863 -28.27117 -25.39019 -25.18360 -22.78720 -22.43761
-21.79849 -21.20933 -20.51103 -18.86262 -17.95074 -17.73267 -17.45033 -17.11554
-16.79730 -15.67680 -15.40647 -15.15046 -14.85462 -14.69253 -14.17272 -14.13896
-14.07482 -13.90080 -13.54414 -13.41675 -13.05514 -12.92680 -12.57260 -12.50674
-12.38183 -11.79650 -11.64599 -11.54904 -11.17760 -11.11101 -11.00464 -10.90637
-10.80203 -10.47990 -10.11733 -9.67863 -9.47064 -9.34611 -8.80066 -7.71584
-7.12757 -6.44278 -4.04156 1.45661 2.05894 2.39705 2.47623 2.88492
3.10520 3.10975 3.15110 3.19430 3.58529 3.72447 3.93804 3.95929
4.13083 4.20517 4.52937 4.62637 4.71422 4.96657 5.10330 5.11163
5.14895 5.26603 5.29817 5.49227 5.70355 5.95392 6.04161 6.08336
6.22725 6.24923 6.30177 6.50676 6.74814 7.00635 7.09368 7.13031
7.22420 7.35953 7.43875 7.83598 7.88961 7.99852 8.50140 9.00823
9.72046 10.73816
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.017926 B = 0.002778 C = 0.002456
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1561.632728 B =10075.398082 C =11396.073859
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.079 3.921
3 H 0.098 0.902
4 C -0.160 4.160
5 C 0.109 3.891
6 H 0.131 0.869
7 N -0.729 5.729
8 C 0.702 3.298
9 O -0.554 6.554
10 N -0.677 5.677
11 C 0.196 3.804
12 C -0.204 4.204
13 C -0.062 4.062
14 C -0.200 4.200
15 C 0.169 3.831
16 O -0.176 6.176
17 C -0.392 4.392
18 H 0.089 0.911
19 C 0.039 3.961
20 N -0.863 5.863
21 Si 0.940 3.060
22 H -0.270 1.270
23 H -0.278 1.278
24 H -0.271 1.271
25 C -0.256 4.256
26 C 0.469 3.531
27 O -0.419 6.419
28 O -0.351 6.351
29 H 0.083 0.917
30 H 0.071 0.929
31 H 0.070 0.930
32 H 0.102 0.898
33 H 0.108 0.892
34 H 0.402 0.598
35 H 0.403 0.597
36 H 0.120 0.880
37 H 0.116 0.884
38 H 0.118 0.882
39 H 0.270 0.730
40 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.246 21.749 -3.677 25.729
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.023 3.977
3 H 0.116 0.884
4 C -0.198 4.198
5 C 0.001 3.999
6 H 0.148 0.852
7 N -0.389 5.389
8 C 0.402 3.598
9 O -0.428 6.428
10 N -0.324 5.324
11 C 0.103 3.897
12 C -0.224 4.224
13 C -0.081 4.081
14 C -0.220 4.220
15 C 0.114 3.886
16 O -0.080 6.080
17 C -0.468 4.468
18 H 0.106 0.894
19 C -0.165 4.165
20 N -0.498 5.498
21 Si 0.765 3.235
22 H -0.196 1.196
23 H -0.203 1.203
24 H -0.196 1.196
25 C -0.278 4.278
26 C 0.304 3.696
27 O -0.296 6.296
28 O -0.269 6.269
29 H 0.102 0.898
30 H 0.090 0.910
31 H 0.089 0.911
32 H 0.120 0.880
33 H 0.127 0.873
34 H 0.238 0.762
35 H 0.238 0.762
36 H 0.138 0.862
37 H 0.134 0.866
38 H 0.136 0.864
39 H 0.080 0.920
40 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -11.607 21.652 -4.228 24.928
hybrid contribution -1.752 -0.393 0.854 1.988
sum -13.359 21.259 -3.375 25.334
Atomic orbital electron populations
1.21929 0.91459 1.03908 1.03575 1.23629 0.96642 0.95386 0.81993
0.88434 1.23328 0.98117 0.99949 0.98382 1.22009 1.02384 0.81740
0.93774 0.85180 1.44865 1.09460 1.04677 1.79927 1.15906 0.84844
0.80930 0.78114 1.91007 1.19063 1.77983 1.54716 1.42511 1.11508
1.04049 1.74355 1.17160 0.88815 0.88475 0.95291 1.20595 0.96969
1.01924 1.02960 1.20537 0.97129 0.92791 0.97604 1.20254 1.00417
1.00220 1.01142 1.19059 0.92504 0.86354 0.90642 1.84027 1.39997
1.33431 1.50521 1.21206 0.91821 1.13667 1.20155 0.89364 1.25269
0.98781 0.95420 0.97022 1.70029 1.29055 1.15370 1.35297 0.85807
0.80056 0.78322 0.79346 1.19560 1.20282 1.19624 1.20757 1.04007
0.97166 1.05853 1.23814 0.80536 0.74700 0.90552 1.90762 1.32355
1.48121 1.58368 1.87416 1.33225 1.65854 1.40449 0.89844 0.91005
0.91113 0.87970 0.87332 0.76221 0.76229 0.86171 0.86563 0.86352
0.91979 0.85280
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.44 9.49 37.16 0.35 -0.08 16
2 C 0.08 0.37 4.13 -26.02 -0.11 0.26 16
3 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16
4 C -0.16 -0.63 6.51 -25.25 -0.16 -0.80 16
5 C 0.11 0.99 3.35 -67.91 -0.23 0.76 16
6 H 0.13 1.32 7.60 -51.93 -0.39 0.93 16
7 N -0.73 -7.28 5.12 -58.66 -0.30 -7.58 16
8 C 0.70 10.65 8.29 -86.92 -0.72 9.93 16
9 O -0.55 -10.78 13.74 5.29 0.07 -10.70 16
10 N -0.68 -10.25 5.35 -14.24 -0.08 -10.33 16
11 C 0.20 3.82 6.27 -83.71 -0.52 3.30 16
12 C -0.20 -4.10 8.65 -39.34 -0.34 -4.44 16
13 C -0.06 -1.21 10.03 -39.63 -0.40 -1.61 16
14 C -0.20 -4.39 9.99 -39.36 -0.39 -4.78 16
15 C 0.17 4.12 6.64 -39.14 -0.26 3.86 16
16 O -0.18 -5.02 9.76 0.03 0.00 -5.02 16
17 C -0.39 -10.81 9.44 30.88 0.29 -10.52 16
18 H 0.09 2.22 5.30 -52.49 -0.28 1.94 16
19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16
20 N -0.86 -25.19 13.67 55.48 0.76 -24.44 16
21 Si 0.94 20.11 29.55 -169.99 -5.02 15.08 16
22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16
23 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16
24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16
25 C -0.26 -5.55 9.04 -39.21 -0.35 -5.90 16
26 C 0.47 5.68 8.15 36.40 0.30 5.98 16
27 O -0.42 -7.07 18.00 -18.29 -0.33 -7.40 16
28 O -0.35 -3.40 10.88 -40.52 -0.44 -3.84 16
29 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16
30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16
31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16
32 H 0.10 0.25 7.36 -51.93 -0.38 -0.14 16
33 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16
34 H 0.40 2.58 8.37 -40.82 -0.34 2.24 16
35 H 0.40 4.59 8.83 -40.82 -0.36 4.23 16
36 H 0.12 2.47 6.45 -52.49 -0.34 2.13 16
37 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16
38 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16
39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16
40 H 0.13 2.71 5.72 -52.49 -0.30 2.41 16
LS Contribution 347.63 15.07 5.24 5.24
Total: -1.00 -37.48 347.63 -7.23 -44.72
By element:
Atomic # 1 Polarization: 11.84 SS G_CDS: -4.49 Total: 7.35 kcal
Atomic # 6 Polarization: -0.44 SS G_CDS: -2.65 Total: -3.08 kcal
Atomic # 7 Polarization: -42.73 SS G_CDS: 0.38 Total: -42.34 kcal
Atomic # 8 Polarization: -26.27 SS G_CDS: -0.70 Total: -26.96 kcal
Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -37.48 -7.23 -44.72 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001434684407.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.439 kcal
(2) G-P(sol) polarization free energy of solvation -37.483 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.922 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.157 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds