Wall clock time and date at job start Tue Mar 31 2020 13:02:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08999 * 110.28093 * 2 1
4 4 C 1.54359 * 110.32264 * 122.11978 * 2 1 3
5 5 C 1.54472 * 103.04431 * 136.71983 * 4 2 1
6 6 H 1.08995 * 110.40713 * 119.27926 * 5 4 2
7 7 N 1.46506 * 110.40327 * 241.58756 * 5 4 2
8 8 C 1.34778 * 119.99665 * 203.36730 * 7 5 4
9 9 O 1.21587 * 119.99998 * 0.26734 * 8 7 5
10 10 N 1.34779 * 119.99811 * 179.97438 * 8 7 5
11 11 C 1.39946 * 119.99600 * 174.82986 * 10 8 7
12 12 C 1.38951 * 120.03798 * 326.19270 * 11 10 8
13 13 C 1.38168 * 120.06655 * 179.71930 * 12 11 10
14 14 C 1.38173 * 120.13591 * 0.55753 * 13 12 11
15 15 C 1.38907 * 120.06813 * 359.71703 * 14 13 12
16 16 O 1.35753 * 120.03432 * 179.97438 * 15 14 13
17 17 C 1.34834 * 117.00120 * 185.92883 * 16 15 14
18 18 H 1.07999 * 119.99871 * 5.41972 * 17 16 15
19 19 C 1.38647 * 119.99688 * 185.41490 * 17 16 15
20 20 N 1.31559 * 120.00273 * 0.02562 * 19 17 16
21 21 Si 1.86805 * 119.99940 * 180.02562 * 19 17 16
22 22 H 1.48503 * 109.47172 * 59.99423 * 21 19 17
23 23 H 1.48501 * 109.47097 * 180.02562 * 21 19 17
24 24 H 1.48507 * 109.46632 * 300.00057 * 21 19 17
25 25 C 1.38709 * 120.03144 * 146.46572 * 11 10 8
26 26 C 1.51504 * 104.73068 * 0.42869 * 5 4 2
27 27 O 1.20829 * 125.94897 * 159.51662 * 26 5 4
28 28 O 1.34852 * 107.95488 * 339.58165 * 26 5 4
29 29 H 1.09006 * 109.46667 * 297.87717 * 1 2 3
30 30 H 1.08996 * 109.47568 * 57.87696 * 1 2 3
31 31 H 1.09001 * 109.47020 * 177.88498 * 1 2 3
32 32 H 1.09000 * 110.70224 * 18.33271 * 4 2 1
33 33 H 1.09001 * 110.85476 * 255.17581 * 4 2 1
34 34 H 0.96991 * 120.00118 * 23.36692 * 7 5 4
35 35 H 0.96997 * 119.99859 * 354.83252 * 10 8 7
36 36 H 1.07995 * 119.97101 * 359.97438 * 12 11 10
37 37 H 1.07999 * 119.93135 * 180.29577 * 13 12 11
38 38 H 1.07996 * 119.96301 * 179.70302 * 14 13 12
39 39 H 0.97005 * 119.99899 * 180.02562 * 20 19 17
40 40 H 1.08002 * 120.06996 * 359.97438 * 25 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9079 1.0224 0.0000
4 6 2.0662 -0.7696 1.2259
5 6 3.2146 -1.6149 0.6321
6 1 4.1621 -1.3531 1.1030
7 7 2.9383 -3.0435 0.8026
8 6 3.9530 -3.9306 0.8042
9 8 5.0980 -3.5448 0.6690
10 7 3.6988 -5.2448 0.9616
11 6 4.7381 -6.1761 0.8554
12 6 5.7834 -5.9534 -0.0326
13 6 6.8127 -6.8696 -0.1338
14 6 6.8003 -8.0151 0.6388
15 6 5.7552 -8.2461 1.5242
16 8 5.7434 -9.3720 2.2825
17 6 4.6432 -9.5958 3.0291
18 1 3.7881 -8.9420 2.9401
19 6 4.6095 -10.6651 3.9109
20 7 5.6513 -11.4611 4.0196
21 14 3.0850 -10.9755 4.9448
22 1 1.9210 -11.2094 4.0527
23 1 3.3017 -12.1700 5.8001
24 1 2.8205 -9.7934 5.8039
25 6 4.7228 -7.3250 1.6323
26 6 3.2381 -1.2535 -0.8390
27 8 4.1703 -1.4068 -1.5924
28 8 2.0369 -0.7299 -1.1577
29 1 -0.3633 0.4806 0.9085
30 1 -0.3634 0.5464 -0.8703
31 1 -0.3633 -1.0270 -0.0379
32 1 1.2924 -1.4121 1.6462
33 1 2.4453 -0.0810 1.9810
34 1 2.0252 -3.3509 0.9144
35 1 2.7957 -5.5452 1.1485
36 1 5.7935 -5.0614 -0.6413
37 1 7.6265 -6.6920 -0.8212
38 1 7.6038 -8.7316 0.5539
39 1 5.6276 -12.2095 4.6364
40 1 3.9094 -7.5023 2.3203
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001434684407.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:02:46
Heat of formation + Delta-G solvation = -123.965318 kcal
Electronic energy + Delta-G solvation = -26081.804624 eV
Core-core repulsion = 22055.105786 eV
Total energy + Delta-G solvation = -4026.698838 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.125 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-42.43917 -41.49886 -40.41055 -38.85904 -38.29567 -36.15595 -35.73390 -34.22254
-33.53113 -31.38991 -30.66736 -29.71331 -27.28581 -25.84683 -24.09638 -23.51047
-22.94656 -22.29561 -21.69809 -20.25531 -19.49881 -19.20873 -18.27947 -18.04717
-17.92295 -16.91988 -16.87746 -16.56231 -16.23090 -15.97166 -15.74035 -15.51358
-15.42345 -14.94710 -14.69137 -14.58809 -14.22153 -13.75120 -13.57588 -13.43175
-13.26433 -13.13026 -12.90205 -12.80203 -12.62433 -12.48250 -12.19220 -12.13586
-11.87739 -11.62939 -11.48539 -11.37093 -11.16506 -10.72154 -10.31543 -9.35541
-8.87077 -8.44181 -6.13286 0.38873 0.58354 0.70118 1.37821 1.44276
1.48974 1.54686 1.85287 2.20131 2.22003 2.83853 2.91314 3.03233
3.16890 3.18984 3.49519 3.64206 3.87367 4.09107 4.16328 4.26788
4.32058 4.43648 4.61399 4.65468 4.70780 4.80773 4.89473 4.98006
5.01431 5.12274 5.13697 5.28848 5.32022 5.44507 5.65158 5.66537
5.67743 5.83378 6.02892 6.17624 6.23704 6.80212 6.99767 7.30832
7.79099 8.78693
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.017926 B = 0.002778 C = 0.002456
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1561.632728 B =10075.398082 C =11396.073859
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.070 3.930
3 H 0.116 0.884
4 C -0.141 4.141
5 C 0.107 3.893
6 H 0.119 0.881
7 N -0.706 5.706
8 C 0.699 3.301
9 O -0.598 6.598
10 N -0.668 5.668
11 C 0.206 3.794
12 C -0.203 4.203
13 C -0.052 4.052
14 C -0.213 4.213
15 C 0.136 3.864
16 O -0.225 6.225
17 C -0.414 4.414
18 H 0.106 0.894
19 C -0.023 4.023
20 N -0.921 5.921
21 Si 1.020 2.980
22 H -0.254 1.254
23 H -0.276 1.276
24 H -0.255 1.255
25 C -0.255 4.255
26 C 0.468 3.532
27 O -0.482 6.482
28 O -0.365 6.365
29 H 0.111 0.889
30 H 0.065 0.935
31 H 0.069 0.931
32 H 0.128 0.872
33 H 0.138 0.862
34 H 0.423 0.577
35 H 0.423 0.577
36 H 0.121 0.879
37 H 0.150 0.850
38 H 0.120 0.880
39 H 0.272 0.728
40 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.524 24.185 -2.736 29.419
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.016 3.984
3 H 0.133 0.867
4 C -0.179 4.179
5 C -0.001 4.001
6 H 0.136 0.864
7 N -0.367 5.367
8 C 0.400 3.600
9 O -0.476 6.476
10 N -0.317 5.317
11 C 0.111 3.889
12 C -0.224 4.224
13 C -0.070 4.070
14 C -0.233 4.233
15 C 0.085 3.915
16 O -0.131 6.131
17 C -0.490 4.490
18 H 0.123 0.877
19 C -0.221 4.221
20 N -0.559 5.559
21 Si 0.839 3.161
22 H -0.179 1.179
23 H -0.201 1.201
24 H -0.180 1.180
25 C -0.277 4.277
26 C 0.307 3.693
27 O -0.364 6.364
28 O -0.284 6.284
29 H 0.130 0.870
30 H 0.084 0.916
31 H 0.088 0.912
32 H 0.146 0.854
33 H 0.156 0.844
34 H 0.263 0.737
35 H 0.261 0.739
36 H 0.139 0.861
37 H 0.168 0.832
38 H 0.138 0.862
39 H 0.081 0.919
40 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -14.996 24.167 -3.298 28.632
hybrid contribution -0.752 -0.862 0.375 1.203
sum -15.748 23.305 -2.923 28.279
Atomic orbital electron populations
1.21989 0.89718 1.04155 1.04762 1.24117 0.97929 0.95768 0.80555
0.86664 1.23436 0.96497 0.99638 0.98285 1.22196 1.04415 0.81425
0.92043 0.86352 1.44665 1.09381 1.04531 1.78083 1.16100 0.85187
0.81103 0.77640 1.90985 1.21322 1.78681 1.56571 1.42329 1.11519
1.03679 1.74138 1.17124 0.89530 0.88358 0.93920 1.20816 0.97189
1.01697 1.02670 1.20871 0.97751 0.91361 0.97023 1.20454 1.00223
1.01253 1.01399 1.19558 0.94290 0.86504 0.91145 1.83997 1.41109
1.35702 1.52317 1.21798 0.92453 1.14402 1.20324 0.87719 1.26630
1.02579 0.94735 0.98148 1.70192 1.32056 1.16607 1.37046 0.84634
0.75518 0.78539 0.77430 1.17859 1.20064 1.17963 1.20778 1.03443
0.97344 1.06148 1.24332 0.80295 0.73462 0.91239 1.90722 1.34755
1.50692 1.60214 1.87402 1.31892 1.65799 1.43278 0.87023 0.91595
0.91200 0.85421 0.84359 0.73732 0.73889 0.86141 0.83228 0.86185
0.91864 0.84754
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.28 9.49 71.98 0.68 0.41 16
2 C 0.07 0.42 4.13 31.06 0.13 0.54 16
3 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16
4 C -0.14 -0.50 6.51 31.56 0.21 -0.29 16
5 C 0.11 1.70 3.35 45.00 0.15 1.85 16
6 H 0.12 2.25 7.60 -2.39 -0.02 2.23 16
7 N -0.71 -12.25 5.12 -457.75 -2.35 -14.60 16
8 C 0.70 20.07 8.29 179.05 1.48 21.56 16
9 O -0.60 -22.94 13.74 -3.99 -0.05 -23.00 16
10 N -0.67 -18.94 5.35 -317.23 -1.70 -20.63 16
11 C 0.21 7.83 6.27 38.13 0.24 8.07 16
12 C -0.20 -7.99 8.65 22.42 0.19 -7.80 16
13 C -0.05 -1.98 10.03 22.24 0.22 -1.76 16
14 C -0.21 -9.50 9.99 22.41 0.22 -9.28 16
15 C 0.14 6.84 6.64 22.56 0.15 6.99 16
16 O -0.23 -13.38 9.76 -22.81 -0.22 -13.61 16
17 C -0.41 -23.39 9.44 67.92 0.64 -22.75 16
18 H 0.11 5.28 5.30 -2.91 -0.02 5.27 16
19 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16
20 N -0.92 -55.89 13.67 21.61 0.30 -55.60 16
21 Si 1.02 41.14 29.55 68.60 2.03 43.17 16
22 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16
23 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16
24 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16
25 C -0.26 -11.04 9.04 22.51 0.20 -10.84 16
26 C 0.47 11.05 8.15 71.49 0.58 11.63 16
27 O -0.48 -16.77 18.00 21.51 0.39 -16.39 16
28 O -0.37 -6.50 10.88 -58.03 -0.63 -7.13 16
29 H 0.11 -0.36 8.14 -2.38 -0.02 -0.38 16
30 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16
31 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16
32 H 0.13 -0.12 7.36 -2.39 -0.02 -0.14 16
33 H 0.14 -0.19 8.14 -2.39 -0.02 -0.21 16
34 H 0.42 3.80 8.37 -92.72 -0.78 3.03 16
35 H 0.42 8.47 8.83 -92.71 -0.82 7.65 16
36 H 0.12 4.85 6.45 -2.91 -0.02 4.83 16
37 H 0.15 4.69 8.06 -2.91 -0.02 4.66 16
38 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16
39 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16
40 H 0.13 5.56 5.72 -2.91 -0.02 5.55 16
Total: -1.00 -88.21 347.63 2.86 -85.35
By element:
Atomic # 1 Polarization: 25.39 SS G_CDS: -0.48 Total: 24.92 kcal
Atomic # 6 Polarization: -8.07 SS G_CDS: 5.58 Total: -2.50 kcal
Atomic # 7 Polarization: -87.08 SS G_CDS: -3.75 Total: -90.82 kcal
Atomic # 8 Polarization: -59.60 SS G_CDS: -0.52 Total: -60.12 kcal
Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal
Total: -88.21 2.86 -85.35 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001434684407.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.611 kcal
(2) G-P(sol) polarization free energy of solvation -88.215 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.355 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.965 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds