Wall clock time and date at job start Tue Mar 31 2020 13:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46953 * 2 1 4 4 C 1.50701 * 109.46804 * 119.99671 * 2 1 3 5 5 H 1.07998 * 120.00012 * 120.00293 * 4 2 1 6 6 C 1.37879 * 120.00260 * 300.00088 * 4 2 1 7 7 N 1.31515 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00288 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47011 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46919 * 119.99991 * 8 6 4 11 11 H 1.48494 * 109.46952 * 240.00108 * 8 6 4 12 12 N 1.46496 * 109.47553 * 239.99519 * 2 1 3 13 13 C 1.46501 * 120.00143 * 300.00375 * 12 2 1 14 14 S 1.65608 * 119.99953 * 119.99911 * 12 2 1 15 15 O 1.42099 * 106.40241 * 203.54109 * 14 12 2 16 16 O 1.42097 * 106.39895 * 336.46183 * 14 12 2 17 17 N 1.65596 * 107.21450 * 90.00320 * 14 12 2 18 18 C 1.46496 * 120.00278 * 65.00189 * 17 14 12 19 19 H 1.09005 * 110.01678 * 336.38743 * 18 17 14 20 20 C 1.54265 * 110.03630 * 97.83105 * 18 17 14 21 21 C 1.54893 * 104.19659 * 95.67320 * 20 18 17 22 22 C 1.54890 * 102.74626 * 37.94755 * 21 20 18 23 23 H 1.08991 * 110.48575 * 80.73330 * 22 21 20 24 24 C 1.50704 * 110.59524 * 203.32228 * 22 21 20 25 25 O 1.20822 * 119.99744 * 114.84419 * 24 22 21 26 26 O 1.34223 * 120.00018 * 294.83830 * 24 22 21 27 27 C 1.53878 * 110.03614 * 214.99981 * 18 17 14 28 28 H 1.08998 * 109.47442 * 300.00338 * 1 2 3 29 29 H 1.09009 * 109.47055 * 60.00572 * 1 2 3 30 30 H 1.09006 * 109.46953 * 180.02562 * 1 2 3 31 31 H 0.97008 * 120.00060 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46532 * 269.99642 * 13 12 2 33 33 H 1.09000 * 109.46877 * 29.99666 * 13 12 2 34 34 H 1.09000 * 109.47251 * 149.99772 * 13 12 2 35 35 H 0.97005 * 120.00011 * 245.00188 * 17 14 12 36 36 H 1.08995 * 110.49185 * 214.35773 * 20 18 17 37 37 H 1.09004 * 110.48572 * 337.00018 * 20 18 17 38 38 H 1.09003 * 110.75631 * 279.62942 * 21 20 18 39 39 H 1.09000 * 110.91041 * 156.33254 * 21 20 18 40 40 H 0.96705 * 117.00122 * 180.02562 * 26 24 22 41 41 H 1.09002 * 110.03163 * 359.97438 * 27 18 17 42 42 H 1.08991 * 110.03527 * 121.37961 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3223 -1.1194 4.0081 9 1 3.1482 -2.2854 3.6040 10 1 3.1470 -0.1855 4.8162 11 1 1.1675 -1.5864 4.8165 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 2.8230 -0.5647 -3.5258 16 8 2.6904 1.4972 -2.1192 17 7 4.5438 -0.1043 -1.8178 18 6 5.1358 -1.4441 -1.8412 19 1 4.3525 -2.1993 -1.7760 20 6 5.9523 -1.6386 -3.1355 21 6 7.4058 -1.2983 -2.7225 22 6 7.5034 -1.8918 -1.2952 23 1 7.6863 -2.9653 -1.3401 24 6 8.5902 -1.2053 -0.5087 25 8 8.3076 -0.5446 0.4626 26 8 9.8722 -1.3281 -0.8871 27 6 6.1220 -1.6052 -0.6710 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.7087 1.1616 3.4843 32 1 2.4158 -2.7377 -0.9714 33 1 0.6905 -2.3002 -0.9845 34 1 1.6239 -2.2854 -2.5000 35 1 5.0734 0.6550 -1.5279 36 1 5.8847 -2.6712 -3.4778 37 1 5.6063 -0.9553 -3.9112 38 1 7.5595 -0.2193 -2.7036 39 1 8.1222 -1.7774 -3.3899 40 1 10.5340 -0.8698 -0.3512 41 1 6.1605 -0.6863 -0.0859 42 1 5.8173 -2.4385 -0.0380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571036712.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:25 Heat of formation + Delta-G solvation = -176.023829 kcal Electronic energy + Delta-G solvation = -26756.580556 eV Core-core repulsion = 22863.068243 eV Total energy + Delta-G solvation = -3893.512313 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64695 -38.28196 -36.63339 -36.23576 -36.13912 -35.24059 -33.26263 -32.58975 -29.16226 -29.07131 -27.78823 -25.56765 -25.12731 -23.37726 -20.84520 -20.77815 -20.00766 -18.88611 -18.23494 -17.25595 -17.07304 -16.83360 -16.32510 -16.06384 -15.63596 -15.11129 -14.95319 -14.34268 -13.86371 -13.52535 -13.45377 -13.24642 -12.81671 -12.56052 -12.16925 -12.01758 -11.91417 -11.77985 -11.70835 -11.50965 -11.39222 -11.34648 -11.14763 -11.04191 -11.01702 -10.99809 -10.89306 -10.77766 -10.51001 -10.42601 -10.25166 -10.03535 -9.35945 -9.10979 -8.47124 -7.95800 -6.07937 -4.15969 1.27263 2.06520 2.85264 3.25478 3.34066 3.35623 3.50774 4.12652 4.26045 4.37451 4.40562 4.71864 4.98544 5.12503 5.19978 5.23106 5.26087 5.31021 5.38904 5.51027 5.60243 5.72446 5.74503 5.93208 6.06077 6.14451 6.21157 6.28013 6.37259 6.47997 6.64226 6.84501 6.87331 7.10731 7.25765 7.53706 7.65064 7.73980 7.79575 8.05501 8.27325 8.87228 9.50560 10.97219 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.005575 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.027679 B = 5021.488086 C = 6768.256313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.990 5.990 13 C 0.097 3.903 14 S 2.781 3.219 15 O -0.998 6.998 16 O -0.982 6.982 17 N -1.121 6.121 18 C 0.158 3.842 19 H 0.092 0.908 20 C -0.139 4.139 21 C -0.109 4.109 22 C -0.088 4.088 23 H 0.114 0.886 24 C 0.482 3.518 25 O -0.507 6.507 26 O -0.518 6.518 27 C -0.123 4.123 28 H 0.093 0.907 29 H 0.012 0.988 30 H 0.033 0.967 31 H 0.263 0.737 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.412 0.588 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.408 0.592 41 H 0.100 0.900 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.939 -7.293 -9.033 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.832 5.832 13 C -0.049 4.049 14 S 2.790 3.210 15 O -0.982 6.982 16 O -0.967 6.967 17 N -0.878 5.878 18 C 0.050 3.950 19 H 0.110 0.890 20 C -0.178 4.178 21 C -0.147 4.147 22 C -0.107 4.107 23 H 0.132 0.868 24 C 0.324 3.676 25 O -0.394 6.394 26 O -0.330 6.330 27 C -0.162 4.162 28 H 0.111 0.889 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.246 0.754 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.266 0.734 41 H 0.118 0.882 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.053 -6.851 -9.688 16.913 hybrid contribution 1.159 -0.079 1.977 2.294 sum 13.212 -6.930 -7.710 16.794 Atomic orbital electron populations 1.22069 0.98073 0.99582 1.00817 1.18729 0.91794 0.92755 0.80252 0.92364 1.21393 1.31641 1.12989 0.90074 0.91909 1.24923 0.94989 0.94974 0.99001 1.69890 1.36400 1.22641 1.23657 0.86493 0.78550 0.79634 0.82990 1.19817 1.21025 1.21065 1.57662 1.64516 1.21323 1.39743 1.21301 1.01905 0.81872 0.99827 1.01830 0.72643 0.73131 0.73396 1.93531 1.86112 1.76341 1.42185 1.93596 1.83623 1.32560 1.86873 1.56227 1.32239 1.14458 1.84897 1.21192 0.96023 0.83911 0.93883 0.89040 1.22926 0.93934 1.02822 0.98109 1.22475 0.97972 1.01255 0.92968 1.21940 0.91551 1.01292 0.95949 0.86772 1.23471 0.82798 0.78356 0.82996 1.90766 1.83140 1.38373 1.27093 1.84539 1.18133 1.71320 1.59048 1.22548 0.90422 1.05442 0.97760 0.88869 0.96862 0.94827 0.92740 0.93967 0.90587 0.91999 0.75433 0.90117 0.89814 0.90905 0.90173 0.73390 0.88155 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 2 C 0.27 6.48 2.62 -69.09 -0.18 6.30 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -13.27 8.37 -34.44 -0.29 -13.56 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.52 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.62 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 N -0.99 -19.93 3.12 -115.85 -0.36 -20.29 16 13 C 0.10 1.65 9.33 59.85 0.56 2.21 16 14 S 2.78 52.86 6.05 -107.50 -0.65 52.21 16 15 O -1.00 -19.32 16.50 -57.17 -0.94 -20.26 16 16 O -0.98 -22.26 16.70 -57.17 -0.95 -23.22 16 17 N -1.12 -17.17 5.46 -3.94 -0.02 -17.20 16 18 C 0.16 2.02 3.47 -66.81 -0.23 1.79 16 19 H 0.09 1.15 6.67 -51.93 -0.35 0.81 16 20 C -0.14 -1.44 6.54 -25.07 -0.16 -1.60 16 21 C -0.11 -0.98 6.32 -24.74 -0.16 -1.13 16 22 C -0.09 -0.86 3.36 -90.11 -0.30 -1.16 16 23 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 24 C 0.48 5.38 7.63 36.01 0.27 5.65 16 25 O -0.51 -7.64 16.18 -18.75 -0.30 -7.94 16 26 O -0.52 -4.29 13.42 -39.24 -0.53 -4.81 16 27 C -0.12 -1.51 5.95 -25.61 -0.15 -1.67 16 28 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 29 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.03 0.73 6.66 -51.93 -0.35 0.39 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.04 0.64 7.44 -51.93 -0.39 0.26 16 33 H 0.08 1.30 6.43 -51.93 -0.33 0.97 16 34 H 0.06 0.95 7.02 -51.93 -0.36 0.58 16 35 H 0.41 5.93 8.67 -34.47 -0.30 5.63 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 38 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.41 1.82 9.10 45.56 0.41 2.23 16 41 H 0.10 1.49 6.46 -51.93 -0.34 1.15 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -33.72 351.66 -8.42 -42.14 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.16 Total: 7.05 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.41 Total: -4.70 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: 0.24 Total: -61.39 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -2.73 Total: -56.23 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 52.86 SS G_CDS: -0.65 Total: 52.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.72 -8.42 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571036712.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.881 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds