Wall clock time and date at job start Tue Mar 31 2020 13:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46953 * 2 1 4 4 C 1.50701 * 109.46804 * 119.99671 * 2 1 3 5 5 H 1.07998 * 120.00012 * 120.00293 * 4 2 1 6 6 C 1.37879 * 120.00260 * 300.00088 * 4 2 1 7 7 N 1.31515 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00288 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47011 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46919 * 119.99991 * 8 6 4 11 11 H 1.48494 * 109.46952 * 240.00108 * 8 6 4 12 12 N 1.46496 * 109.47553 * 239.99519 * 2 1 3 13 13 C 1.46501 * 120.00143 * 300.00375 * 12 2 1 14 14 S 1.65608 * 119.99953 * 119.99911 * 12 2 1 15 15 O 1.42099 * 106.40241 * 203.54109 * 14 12 2 16 16 O 1.42097 * 106.39895 * 336.46183 * 14 12 2 17 17 N 1.65596 * 107.21450 * 90.00320 * 14 12 2 18 18 C 1.46496 * 120.00278 * 65.00189 * 17 14 12 19 19 H 1.09005 * 110.01678 * 336.38743 * 18 17 14 20 20 C 1.54265 * 110.03630 * 97.83105 * 18 17 14 21 21 C 1.54893 * 104.19659 * 95.67320 * 20 18 17 22 22 C 1.54890 * 102.74626 * 37.94755 * 21 20 18 23 23 H 1.08991 * 110.48575 * 80.73330 * 22 21 20 24 24 C 1.50704 * 110.59524 * 203.32228 * 22 21 20 25 25 O 1.20822 * 119.99744 * 114.84419 * 24 22 21 26 26 O 1.34223 * 120.00018 * 294.83830 * 24 22 21 27 27 C 1.53878 * 110.03614 * 214.99981 * 18 17 14 28 28 H 1.08998 * 109.47442 * 300.00338 * 1 2 3 29 29 H 1.09009 * 109.47055 * 60.00572 * 1 2 3 30 30 H 1.09006 * 109.46953 * 180.02562 * 1 2 3 31 31 H 0.97008 * 120.00060 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46532 * 269.99642 * 13 12 2 33 33 H 1.09000 * 109.46877 * 29.99666 * 13 12 2 34 34 H 1.09000 * 109.47251 * 149.99772 * 13 12 2 35 35 H 0.97005 * 120.00011 * 245.00188 * 17 14 12 36 36 H 1.08995 * 110.49185 * 214.35773 * 20 18 17 37 37 H 1.09004 * 110.48572 * 337.00018 * 20 18 17 38 38 H 1.09003 * 110.75631 * 279.62942 * 21 20 18 39 39 H 1.09000 * 110.91041 * 156.33254 * 21 20 18 40 40 H 0.96705 * 117.00122 * 180.02562 * 26 24 22 41 41 H 1.09002 * 110.03163 * 359.97438 * 27 18 17 42 42 H 1.08991 * 110.03527 * 121.37961 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3223 -1.1194 4.0081 9 1 3.1482 -2.2854 3.6040 10 1 3.1470 -0.1855 4.8162 11 1 1.1675 -1.5864 4.8165 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 2.8230 -0.5647 -3.5258 16 8 2.6904 1.4972 -2.1192 17 7 4.5438 -0.1043 -1.8178 18 6 5.1358 -1.4441 -1.8412 19 1 4.3525 -2.1993 -1.7760 20 6 5.9523 -1.6386 -3.1355 21 6 7.4058 -1.2983 -2.7225 22 6 7.5034 -1.8918 -1.2952 23 1 7.6863 -2.9653 -1.3401 24 6 8.5902 -1.2053 -0.5087 25 8 8.3076 -0.5446 0.4626 26 8 9.8722 -1.3281 -0.8871 27 6 6.1220 -1.6052 -0.6710 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.7087 1.1616 3.4843 32 1 2.4158 -2.7377 -0.9714 33 1 0.6905 -2.3002 -0.9845 34 1 1.6239 -2.2854 -2.5000 35 1 5.0734 0.6550 -1.5279 36 1 5.8847 -2.6712 -3.4778 37 1 5.6063 -0.9553 -3.9112 38 1 7.5595 -0.2193 -2.7036 39 1 8.1222 -1.7774 -3.3899 40 1 10.5340 -0.8698 -0.3512 41 1 6.1605 -0.6863 -0.0859 42 1 5.8173 -2.4385 -0.0380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571036712.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:24 Heat of formation + Delta-G solvation = -202.195388 kcal Electronic energy + Delta-G solvation = -26757.715440 eV Core-core repulsion = 22863.068243 eV Total energy + Delta-G solvation = -3894.647197 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50551 -39.21183 -38.23969 -37.86170 -37.06536 -36.86341 -34.50033 -34.35263 -30.90283 -29.99916 -28.77110 -27.28312 -26.93371 -24.22294 -22.58910 -21.73057 -20.93083 -20.28653 -19.09128 -18.75869 -18.38217 -18.24333 -17.91991 -17.16949 -16.94888 -16.52427 -16.03751 -15.82705 -15.16254 -14.82430 -14.75191 -14.52714 -14.35663 -13.77448 -13.62015 -13.43034 -13.20787 -13.15024 -13.06778 -12.92464 -12.89924 -12.74368 -12.60351 -12.55103 -12.23572 -12.21994 -12.13842 -12.07015 -11.94377 -11.85759 -11.70628 -11.39629 -11.13154 -10.50029 -10.38618 -9.62198 -8.08425 -6.22217 -0.24354 1.22298 1.42815 1.46266 1.55279 2.00304 2.17820 2.45718 2.65229 3.20616 3.41180 3.48617 3.55572 3.96339 4.14623 4.28980 4.33546 4.35803 4.50345 4.55987 4.62579 4.74450 4.76264 4.84551 4.97055 5.02087 5.05284 5.12530 5.18482 5.21345 5.29358 5.33933 5.45051 5.63378 5.65619 5.71972 5.87846 6.06418 6.18982 6.31289 6.87667 7.01508 7.47420 8.96379 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.005575 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.027679 B = 5021.488086 C = 6768.256313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.273 3.727 3 H 0.021 0.979 4 C -0.521 4.521 5 H 0.071 0.929 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.954 3.046 9 H -0.261 1.261 10 H -0.291 1.291 11 H -0.282 1.282 12 N -0.997 5.997 13 C 0.091 3.909 14 S 2.797 3.203 15 O -0.999 6.999 16 O -1.024 7.024 17 N -1.114 6.114 18 C 0.146 3.854 19 H 0.096 0.904 20 C -0.135 4.135 21 C -0.102 4.102 22 C -0.082 4.082 23 H 0.147 0.853 24 C 0.487 3.513 25 O -0.555 6.555 26 O -0.508 6.508 27 C -0.124 4.124 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.047 0.953 31 H 0.262 0.738 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.416 0.584 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.425 0.575 41 H 0.070 0.930 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.678 -9.884 -9.948 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.168 3.832 3 H 0.039 0.961 4 C -0.560 4.560 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.185 1.185 10 H -0.218 1.218 11 H -0.207 1.207 12 N -0.838 5.838 13 C -0.055 4.055 14 S 2.806 3.194 15 O -0.983 6.983 16 O -1.009 7.009 17 N -0.875 5.875 18 C 0.039 3.961 19 H 0.114 0.886 20 C -0.174 4.174 21 C -0.139 4.139 22 C -0.101 4.101 23 H 0.165 0.835 24 C 0.331 3.669 25 O -0.446 6.446 26 O -0.321 6.321 27 C -0.163 4.163 28 H 0.087 0.913 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.250 0.750 36 H 0.126 0.874 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.286 0.714 41 H 0.088 0.912 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.818 -9.475 -10.636 19.845 hybrid contribution 0.703 0.715 2.195 2.413 sum 14.521 -8.761 -8.441 18.943 Atomic orbital electron populations 1.21950 0.97907 1.00186 0.99907 1.18367 0.91934 0.91274 0.81585 0.96096 1.21653 1.31035 1.12868 0.90473 0.91118 1.25670 0.95351 0.95650 1.01813 1.70027 1.37743 1.24088 1.24088 0.85560 0.78003 0.78723 0.79631 1.18512 1.21767 1.20746 1.57544 1.65345 1.22565 1.38379 1.21530 1.02389 0.80259 1.01276 1.01203 0.73108 0.71923 0.73177 1.93521 1.86551 1.76091 1.42098 1.93536 1.84691 1.35295 1.87363 1.55968 1.30752 1.16030 1.84708 1.21548 0.96568 0.82262 0.95720 0.88635 1.22923 0.94077 1.04167 0.96208 1.22466 0.97726 1.00946 0.92799 1.21978 0.89509 1.03035 0.95610 0.83533 1.23721 0.83748 0.77283 0.82150 1.90762 1.83929 1.40572 1.29318 1.84494 1.17472 1.71090 1.59010 1.22482 0.92232 1.04120 0.97459 0.91325 0.96226 0.93365 0.92901 0.92031 0.90881 0.90136 0.75003 0.87447 0.90966 0.91946 0.87392 0.71386 0.91156 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.70 8.95 71.98 0.64 -6.06 16 2 C 0.27 13.40 2.62 44.25 0.12 13.51 16 3 H 0.02 1.19 6.91 -2.38 -0.02 1.18 16 4 C -0.52 -26.45 8.37 25.60 0.21 -26.24 16 5 H 0.07 3.41 7.65 -2.91 -0.02 3.38 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -51.92 11.32 21.45 0.24 -51.67 16 8 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 9 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 N -1.00 -39.69 3.12 -520.45 -1.62 -41.32 16 13 C 0.09 2.91 9.33 127.77 1.19 4.10 16 14 S 2.80 106.02 6.05 -56.49 -0.34 105.68 16 15 O -1.00 -37.40 16.50 -128.00 -2.11 -39.52 16 16 O -1.02 -47.78 16.70 -128.00 -2.14 -49.91 16 17 N -1.11 -33.79 5.46 -166.37 -0.91 -34.70 16 18 C 0.15 3.46 3.47 45.72 0.16 3.62 16 19 H 0.10 2.18 6.67 -2.38 -0.02 2.16 16 20 C -0.13 -2.39 6.54 31.67 0.21 -2.18 16 21 C -0.10 -1.51 6.32 31.89 0.20 -1.30 16 22 C -0.08 -1.37 3.36 -10.46 -0.04 -1.40 16 23 H 0.15 1.54 8.14 -2.39 -0.02 1.52 16 24 C 0.49 9.98 7.63 71.24 0.54 10.52 16 25 O -0.56 -16.56 16.18 21.98 0.36 -16.20 16 26 O -0.51 -7.00 13.42 -51.35 -0.69 -7.69 16 27 C -0.12 -2.87 5.95 31.32 0.19 -2.68 16 28 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 29 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.05 2.10 6.66 -2.38 -0.02 2.09 16 31 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 32 H 0.06 1.72 7.44 -2.39 -0.02 1.71 16 33 H 0.07 2.38 6.43 -2.39 -0.02 2.36 16 34 H 0.08 2.28 7.02 -2.39 -0.02 2.26 16 35 H 0.42 12.20 8.67 -96.74 -0.84 11.36 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.49 8.04 -2.39 -0.02 1.47 16 38 H 0.06 1.06 8.05 -2.39 -0.02 1.04 16 39 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.42 2.79 9.10 -74.05 -0.67 2.12 16 41 H 0.07 2.10 6.46 -2.39 -0.02 2.08 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -73.53 351.66 -1.76 -75.29 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.45 Total: 22.67 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 3.88 Total: -6.90 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -2.29 Total: -127.69 kcal Atomic # 8 Polarization: -108.74 SS G_CDS: -4.58 Total: -113.32 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: 106.02 SS G_CDS: -0.34 Total: 105.68 kcal Total: -73.53 -1.76 -75.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571036712.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.909 kcal (2) G-P(sol) polarization free energy of solvation -73.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds