Wall clock time and date at job start Tue Mar 31 2020 13:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47550 * 2 1 4 4 C 1.50701 * 109.47538 * 120.00244 * 2 1 3 5 5 H 1.07998 * 120.00105 * 119.98983 * 4 2 1 6 6 C 1.37880 * 119.99976 * 300.00377 * 4 2 1 7 7 N 1.31513 * 119.99748 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00255 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47283 * 89.99204 * 8 6 4 10 10 H 1.48502 * 109.47087 * 209.99675 * 8 6 4 11 11 H 1.48502 * 109.46932 * 329.99482 * 8 6 4 12 12 N 1.46503 * 109.46775 * 240.00067 * 2 1 3 13 13 C 1.46505 * 120.00096 * 299.99804 * 12 2 1 14 14 S 1.65606 * 119.99853 * 120.00290 * 12 2 1 15 15 O 1.42099 * 106.40209 * 156.46028 * 14 12 2 16 16 O 1.42102 * 106.40139 * 23.53720 * 14 12 2 17 17 N 1.65594 * 107.21603 * 269.99773 * 14 12 2 18 18 C 1.46499 * 120.00083 * 64.99847 * 17 14 12 19 19 H 1.09003 * 110.06105 * 336.41868 * 18 17 14 20 20 C 1.53878 * 110.03154 * 97.83641 * 18 17 14 21 21 C 1.54265 * 106.60008 * 119.28726 * 20 18 17 22 22 C 1.54890 * 104.19752 * 336.38587 * 21 20 18 23 23 C 1.54266 * 110.03427 * 214.99973 * 18 17 14 24 24 H 1.09006 * 110.59979 * 145.59637 * 23 18 17 25 25 C 1.50697 * 110.48887 * 23.00371 * 23 18 17 26 26 O 1.20833 * 119.99747 * 3.77515 * 25 23 18 27 27 O 1.34230 * 120.00262 * 183.49137 * 25 23 18 28 28 H 1.08999 * 109.47550 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47096 * 299.99582 * 1 2 3 30 30 H 1.08997 * 109.47303 * 59.99478 * 1 2 3 31 31 H 0.96998 * 120.00382 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47089 * 270.00397 * 13 12 2 33 33 H 1.09000 * 109.46753 * 29.99925 * 13 12 2 34 34 H 1.08999 * 109.46952 * 149.99994 * 13 12 2 35 35 H 0.97004 * 120.00016 * 245.00152 * 17 14 12 36 36 H 1.09003 * 110.03153 * 359.97438 * 20 18 17 37 37 H 1.09004 * 110.03057 * 238.57299 * 20 18 17 38 38 H 1.09001 * 110.48182 * 217.71196 * 21 20 18 39 39 H 1.08994 * 110.59953 * 95.12329 * 21 20 18 40 40 H 1.09000 * 110.75438 * 279.63325 * 22 21 20 41 41 H 1.08994 * 110.75813 * 156.25637 * 22 21 20 42 42 H 0.96699 * 116.99771 * 180.27188 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.6298 -0.5461 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0182 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 16 2.9703 0.1142 -2.2863 15 8 3.7117 -0.8789 -2.9816 16 8 3.5794 1.1829 -1.5749 17 7 1.9606 0.8091 -3.3998 18 6 1.0291 1.8618 -2.9874 19 1 0.8231 1.7818 -1.9200 20 6 1.6219 3.2453 -3.3075 21 6 0.6482 3.9249 -4.2922 22 6 -0.1009 2.7455 -4.9607 23 6 -0.2842 1.7491 -3.7889 24 1 -1.1357 2.0377 -3.1725 25 6 -0.4643 0.3473 -4.3120 26 8 0.3322 -0.5133 -4.0203 27 8 -1.5125 0.0534 -5.0972 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.7094 1.1616 3.4844 32 1 2.4155 -2.7377 -0.9717 33 1 0.6903 -2.3002 -0.9846 34 1 1.6236 -2.2852 -2.5002 35 1 1.9860 0.5190 -4.3251 36 1 2.6030 3.1333 -3.7692 37 1 1.7038 3.8365 -2.3954 38 1 1.1985 4.4988 -5.0378 39 1 -0.0515 4.5674 -3.7577 40 1 0.5034 2.3033 -5.7527 41 1 -1.0673 3.0704 -5.3461 42 1 -1.5879 -0.8602 -5.4049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573536283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:16 Heat of formation + Delta-G solvation = -179.591197 kcal Electronic energy + Delta-G solvation = -27770.959128 eV Core-core repulsion = 23877.292122 eV Total energy + Delta-G solvation = -3893.667006 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59978 -39.03206 -38.19974 -37.84528 -36.92432 -36.81768 -34.50459 -34.09138 -30.90070 -30.56935 -28.28929 -27.28616 -26.98274 -24.05026 -22.56973 -21.63705 -21.04802 -20.49103 -19.10810 -18.72210 -18.54064 -18.07118 -17.68489 -16.92926 -16.69210 -16.49677 -16.10101 -15.67769 -15.20877 -15.00539 -14.79118 -14.56177 -14.12490 -13.86259 -13.63611 -13.34094 -13.31098 -13.14979 -13.11559 -12.97847 -12.91493 -12.79069 -12.58835 -12.46091 -12.20910 -12.19017 -12.11633 -11.97657 -11.87087 -11.82658 -11.45930 -11.23665 -11.14707 -10.49808 -10.13677 -9.61744 -8.11355 -6.23876 -0.20429 1.33979 1.41389 1.43578 1.52568 2.07486 2.22621 2.43844 2.71777 3.16528 3.32320 3.50487 3.60268 4.02223 4.11054 4.26286 4.37663 4.45306 4.47574 4.59074 4.66953 4.72086 4.78416 4.82945 4.99020 5.03728 5.09411 5.12722 5.14790 5.21663 5.26179 5.34699 5.49121 5.61802 5.72381 5.76481 5.89748 6.13595 6.27742 6.34024 6.82691 7.14538 7.44431 8.92684 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016588 B = 0.005079 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.609369 B = 5512.079128 C = 5617.617742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.274 3.726 3 H 0.028 0.972 4 C -0.541 4.541 5 H 0.050 0.950 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.953 3.047 9 H -0.282 1.282 10 H -0.276 1.276 11 H -0.271 1.271 12 N -0.993 5.993 13 C 0.119 3.881 14 S 2.796 3.204 15 O -1.021 7.021 16 O -1.016 7.016 17 N -1.088 6.088 18 C 0.154 3.846 19 H 0.076 0.924 20 C -0.144 4.144 21 C -0.113 4.113 22 C -0.100 4.100 23 C -0.092 4.092 24 H 0.139 0.861 25 C 0.488 3.512 26 O -0.525 6.525 27 O -0.511 6.511 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.419 0.581 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 4.244 -17.151 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.170 3.830 3 H 0.046 0.954 4 C -0.580 4.580 5 H 0.069 0.931 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.779 3.221 9 H -0.208 1.208 10 H -0.201 1.201 11 H -0.196 1.196 12 N -0.834 5.834 13 C -0.027 4.027 14 S 2.805 3.195 15 O -1.005 7.005 16 O -1.000 7.000 17 N -0.852 5.852 18 C 0.046 3.954 19 H 0.095 0.905 20 C -0.183 4.183 21 C -0.151 4.151 22 C -0.138 4.138 23 C -0.113 4.113 24 H 0.157 0.843 25 C 0.330 3.670 26 O -0.414 6.414 27 O -0.324 6.324 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.258 0.742 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -7.352 4.610 -16.614 18.743 hybrid contribution 0.175 -1.419 0.733 1.607 sum -7.177 3.191 -15.881 17.717 Atomic orbital electron populations 1.21897 0.96846 0.99844 1.00375 1.18405 0.92209 0.91295 0.81099 0.95420 1.21652 1.31661 1.12985 0.91742 0.93127 1.25577 0.95204 0.95757 1.01393 1.69943 1.37132 1.23490 1.24339 0.85641 0.78060 0.79055 0.79365 1.20819 1.20120 1.19554 1.57466 1.69854 1.20851 1.35216 1.21109 1.00746 0.80612 1.00225 1.01156 0.73555 0.72417 0.72371 1.93480 1.71139 1.60918 1.74990 1.93544 1.75411 1.57124 1.73884 1.55695 1.55499 1.50496 1.23511 1.21441 0.87734 0.87603 0.98629 0.90542 1.22729 1.00233 0.94297 1.01050 1.22351 0.97686 0.97150 0.97869 1.22499 1.02686 0.93783 0.94803 1.22223 0.99417 0.89733 0.99876 0.84324 1.23305 0.77681 0.91167 0.74813 1.90715 1.44041 1.50403 1.56256 1.84489 1.46534 1.39119 1.62294 0.94613 0.91180 0.94564 0.92565 0.94763 0.91035 0.91131 0.74245 0.91256 0.91145 0.89467 0.89426 0.90775 0.87622 0.71454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.84 71.98 0.64 -5.20 16 2 C 0.27 13.75 1.94 44.24 0.09 13.84 16 3 H 0.03 1.56 6.73 -2.39 -0.02 1.54 16 4 C -0.54 -30.17 8.37 25.60 0.21 -29.95 16 5 H 0.05 2.86 7.65 -2.91 -0.02 2.84 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -50.81 11.32 21.45 0.24 -50.57 16 8 Si 0.95 44.03 29.54 68.60 2.03 46.05 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.99 -43.95 3.12 -520.44 -1.62 -45.58 16 13 C 0.12 4.71 9.53 127.77 1.22 5.93 16 14 S 2.80 118.80 6.01 -56.49 -0.34 118.46 16 15 O -1.02 -46.65 17.21 -128.00 -2.20 -48.86 16 16 O -1.02 -50.11 16.46 -128.00 -2.11 -52.22 16 17 N -1.09 -34.17 3.27 -166.37 -0.54 -34.71 16 18 C 0.15 4.18 3.27 45.72 0.15 4.33 16 19 H 0.08 2.51 5.60 -2.39 -0.01 2.49 16 20 C -0.14 -3.36 6.59 31.32 0.21 -3.15 16 21 C -0.11 -1.61 6.83 31.67 0.22 -1.40 16 22 C -0.10 -1.31 6.30 31.89 0.20 -1.11 16 23 C -0.09 -1.74 3.32 -10.46 -0.03 -1.78 16 24 H 0.14 2.22 8.14 -2.38 -0.02 2.20 16 25 C 0.49 10.12 7.28 71.23 0.52 10.64 16 26 O -0.53 -14.42 13.59 21.94 0.30 -14.12 16 27 O -0.51 -7.39 13.41 -51.41 -0.69 -8.08 16 28 H 0.03 1.54 6.66 -2.39 -0.02 1.53 16 29 H 0.07 3.48 6.07 -2.38 -0.01 3.46 16 30 H 0.04 1.37 6.80 -2.39 -0.02 1.35 16 31 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 2.71 6.43 -2.39 -0.02 2.69 16 34 H 0.07 2.54 7.57 -2.39 -0.02 2.52 16 35 H 0.42 11.66 7.13 -96.74 -0.69 10.97 16 36 H 0.07 1.73 7.92 -2.39 -0.02 1.71 16 37 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 0.96 8.05 -2.39 -0.02 0.94 16 41 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 42 H 0.42 3.15 9.10 -74.06 -0.67 2.48 16 Total: -1.00 -73.87 345.70 -1.38 -75.25 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -0.30 Total: 20.63 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 3.86 Total: -6.26 kcal Atomic # 7 Polarization: -128.93 SS G_CDS: -1.93 Total: -130.86 kcal Atomic # 8 Polarization: -118.57 SS G_CDS: -4.70 Total: -123.27 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 118.80 SS G_CDS: -0.34 Total: 118.46 kcal Total: -73.87 -1.38 -75.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573536283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.342 kcal (2) G-P(sol) polarization free energy of solvation -73.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds