Wall clock time and date at job start Tue Mar 31 2020 13:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.47444 * 2 1 4 4 C 1.50705 * 109.47189 * 240.00152 * 2 1 3 5 5 H 1.07997 * 120.00019 * 240.00409 * 4 2 1 6 6 C 1.37882 * 119.99949 * 59.99755 * 4 2 1 7 7 N 1.31513 * 120.00037 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99761 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46848 * 60.00403 * 8 6 4 10 10 H 1.48503 * 109.46825 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46870 * 299.99893 * 8 6 4 12 12 N 1.46498 * 109.47348 * 120.00044 * 2 1 3 13 13 C 1.46498 * 119.99874 * 60.00075 * 12 2 1 14 14 S 1.65595 * 120.00275 * 239.99785 * 12 2 1 15 15 O 1.42105 * 106.40149 * 23.54018 * 14 12 2 16 16 O 1.42098 * 106.40317 * 156.45891 * 14 12 2 17 17 N 1.65606 * 107.22013 * 270.00200 * 14 12 2 18 18 C 1.46500 * 120.00055 * 64.99549 * 17 14 12 19 19 H 1.08997 * 110.01761 * 336.39592 * 18 17 14 20 20 C 1.53873 * 110.03032 * 97.83741 * 18 17 14 21 21 C 1.54263 * 106.60061 * 119.28172 * 20 18 17 22 22 C 1.54893 * 104.19622 * 336.38998 * 21 20 18 23 23 C 1.54264 * 110.02842 * 215.00151 * 18 17 14 24 24 H 1.09004 * 110.48345 * 145.64983 * 23 18 17 25 25 C 1.50696 * 110.49198 * 23.00802 * 23 18 17 26 26 O 1.20833 * 119.99745 * 359.97438 * 25 23 18 27 27 O 1.34227 * 120.00404 * 180.02562 * 25 23 18 28 28 H 1.09000 * 109.47139 * 300.00085 * 1 2 3 29 29 H 1.09000 * 109.47570 * 59.99552 * 1 2 3 30 30 H 1.08997 * 109.47444 * 179.97438 * 1 2 3 31 31 H 0.96991 * 120.00109 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47325 * 269.99908 * 13 12 2 33 33 H 1.09004 * 109.47539 * 29.99621 * 13 12 2 34 34 H 1.08996 * 109.47424 * 150.00237 * 13 12 2 35 35 H 0.97002 * 119.99610 * 244.99510 * 17 14 12 36 36 H 1.08999 * 110.03062 * 238.56767 * 20 18 17 37 37 H 1.09000 * 110.03293 * 0.02562 * 20 18 17 38 38 H 1.08998 * 110.48868 * 217.71056 * 21 20 18 39 39 H 1.09002 * 110.59326 * 95.12029 * 21 20 18 40 40 H 1.08993 * 110.75389 * 279.62455 * 22 21 20 41 41 H 1.09005 * 110.75593 * 156.25158 * 22 21 20 42 42 H 0.96700 * 117.00130 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8256 -2.5202 -4.0078 10 1 1.8258 -0.4206 -5.2205 11 1 3.8062 -1.1208 -4.0082 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 16 2.9704 0.1141 2.2861 15 8 2.6904 1.4973 2.1192 16 8 2.8228 -0.5646 3.5258 17 7 4.5438 -0.1043 1.8179 18 6 5.0139 0.4529 0.5471 19 1 4.1729 0.5966 -0.1312 20 6 5.7298 1.7928 0.7919 21 6 7.1788 1.6159 0.2932 22 6 7.4182 0.0869 0.3562 23 6 6.0529 -0.4916 -0.0917 24 1 5.9685 -0.4724 -1.1783 25 6 5.8790 -1.8956 0.4274 26 8 5.0121 -2.1387 1.2332 27 8 6.6878 -2.8759 -0.0046 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7088 1.1614 -3.4843 32 1 0.7375 -2.1444 1.9993 33 1 1.5294 -2.5969 0.4707 34 1 2.4628 -2.5819 1.9863 35 1 5.1540 -0.6011 2.3850 36 1 5.2365 2.5874 0.2319 37 1 5.7278 2.0283 1.8561 38 1 7.8747 2.1383 0.9496 39 1 7.2784 1.9757 -0.7309 40 1 7.6550 -0.2254 1.3732 41 1 8.2083 -0.2092 -0.3340 42 1 6.5380 -3.7600 0.3572 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573536284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:21 Heat of formation + Delta-G solvation = -154.931685 kcal Electronic energy + Delta-G solvation = -28082.900549 eV Core-core repulsion = 24190.302860 eV Total energy + Delta-G solvation = -3892.597689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.52026 -37.92877 -36.46288 -36.02334 -35.88125 -35.05241 -32.79929 -32.56143 -29.54953 -28.99580 -27.16182 -25.37772 -25.15047 -23.00882 -20.75721 -20.65076 -19.87619 -19.02362 -17.86969 -17.13704 -16.81641 -16.38848 -16.31996 -15.49340 -15.23785 -15.07124 -14.78827 -14.23837 -13.95959 -13.38313 -13.18497 -13.06518 -12.74622 -12.42651 -11.98086 -11.93343 -11.85295 -11.63282 -11.46267 -11.33522 -11.28227 -11.16194 -11.08105 -11.00275 -10.88919 -10.87187 -10.69177 -10.53582 -10.38685 -10.18126 -10.14513 -9.99226 -9.25007 -8.71150 -8.49534 -7.82797 -6.10637 -4.19175 1.50314 2.39282 3.15044 3.20638 3.28337 3.29199 3.70152 4.30033 4.32644 4.46061 4.59473 4.92889 5.18048 5.19906 5.36915 5.44083 5.45017 5.59641 5.64787 5.70633 5.76562 5.87688 5.97115 6.05183 6.19850 6.35943 6.38032 6.49113 6.62017 6.65962 6.78272 6.94696 6.97277 7.17767 7.47731 7.62704 7.72156 7.81280 8.08410 8.08508 8.28689 8.85379 9.46841 10.93831 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.007820 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.525410 B = 3579.902255 C = 4578.982004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.057 0.943 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.987 5.987 13 C 0.115 3.885 14 S 2.786 3.214 15 O -0.989 6.989 16 O -1.004 7.004 17 N -1.104 6.104 18 C 0.165 3.835 19 H 0.118 0.882 20 C -0.139 4.139 21 C -0.122 4.122 22 C -0.111 4.111 23 C -0.091 4.091 24 H 0.123 0.877 25 C 0.488 3.512 26 O -0.491 6.491 27 O -0.522 6.522 28 H 0.011 0.989 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.410 0.590 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.553 -2.940 3.513 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.075 0.925 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.829 5.829 13 C -0.032 4.032 14 S 2.795 3.205 15 O -0.972 6.972 16 O -0.988 6.988 17 N -0.864 5.864 18 C 0.056 3.944 19 H 0.136 0.864 20 C -0.178 4.178 21 C -0.160 4.160 22 C -0.148 4.148 23 C -0.112 4.112 24 H 0.141 0.859 25 C 0.329 3.671 26 O -0.377 6.377 27 O -0.335 6.335 28 H 0.030 0.970 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.246 0.754 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 11.844 -1.881 4.100 12.674 hybrid contribution 0.498 -1.692 -0.914 1.987 sum 12.342 -3.573 3.186 13.238 Atomic orbital electron populations 1.22041 0.98185 0.99581 1.00608 1.18700 0.91889 0.92563 0.80510 0.92511 1.21352 1.31863 1.13004 0.90099 0.92074 1.24918 0.95039 0.94955 0.98805 1.69870 1.36027 1.22498 1.23847 0.86676 0.79103 0.79819 0.82452 1.20394 1.21240 1.20264 1.57578 1.64624 1.21279 1.39469 1.21075 0.98639 0.82067 1.01372 1.01634 0.72744 0.73392 0.72725 1.93573 1.84218 1.32709 1.86731 1.93519 1.86050 1.76128 1.43092 1.56088 1.30514 1.69899 1.29908 1.21301 0.97440 0.90370 0.85258 0.86446 1.22721 0.94955 0.97529 1.02607 1.22359 0.96851 0.94962 1.01848 1.22486 0.94730 0.95962 1.01667 1.22155 0.98136 0.87570 1.03324 0.85910 1.23219 0.77821 0.87357 0.78677 1.90675 1.32211 1.83026 1.31813 1.84548 1.58829 1.21878 1.68199 0.96962 0.89057 0.94972 0.92595 0.94622 0.90852 0.92690 0.75444 0.90071 0.90629 0.91240 0.90905 0.91185 0.90338 0.73681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.97 37.15 0.33 -3.15 16 2 C 0.27 6.45 1.95 -69.09 -0.13 6.32 16 3 H 0.06 1.50 6.73 -51.93 -0.35 1.15 16 4 C -0.52 -12.96 7.38 -34.44 -0.25 -13.22 16 5 H 0.06 1.50 7.33 -52.49 -0.38 1.12 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.88 -23.54 11.32 55.43 0.63 -22.91 16 8 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 N -0.99 -21.34 3.12 -115.86 -0.36 -21.70 16 13 C 0.12 2.26 9.28 59.85 0.56 2.82 16 14 S 2.79 57.96 6.01 -107.50 -0.65 57.31 16 15 O -0.99 -22.95 16.46 -57.17 -0.94 -23.89 16 16 O -1.00 -22.43 17.21 -57.17 -0.98 -23.41 16 17 N -1.10 -18.67 3.30 -3.94 -0.01 -18.68 16 18 C 0.16 2.59 3.29 -66.81 -0.22 2.37 16 19 H 0.12 2.21 6.47 -51.93 -0.34 1.87 16 20 C -0.14 -1.86 6.59 -25.62 -0.17 -2.03 16 21 C -0.12 -1.24 6.83 -25.07 -0.17 -1.41 16 22 C -0.11 -1.11 6.32 -24.73 -0.16 -1.27 16 23 C -0.09 -1.19 3.32 -90.11 -0.30 -1.49 16 24 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 25 C 0.49 6.68 7.34 36.00 0.26 6.95 16 26 O -0.49 -7.92 13.53 -18.76 -0.25 -8.17 16 27 O -0.52 -5.72 13.42 -39.25 -0.53 -6.25 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 30 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 31 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.45 7.02 -51.93 -0.36 1.09 16 34 H 0.05 1.02 7.68 -51.93 -0.40 0.62 16 35 H 0.41 6.32 7.01 -34.47 -0.24 6.07 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.40 2.87 9.10 45.56 0.41 3.29 16 LS Contribution 348.18 15.07 5.25 5.25 Total: -1.00 -31.60 348.18 -8.52 -40.12 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.30 Total: 10.18 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.35 Total: -2.55 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.25 Total: -63.29 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -2.71 Total: -61.72 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 57.96 SS G_CDS: -0.65 Total: 57.31 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.60 -8.52 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573536284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.811 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds