Wall clock time and date at job start Tue Mar 31 2020 13:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.47444 * 2 1 4 4 C 1.50705 * 109.47189 * 240.00152 * 2 1 3 5 5 H 1.07997 * 120.00019 * 240.00409 * 4 2 1 6 6 C 1.37882 * 119.99949 * 59.99755 * 4 2 1 7 7 N 1.31513 * 120.00037 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99761 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46848 * 60.00403 * 8 6 4 10 10 H 1.48503 * 109.46825 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46870 * 299.99893 * 8 6 4 12 12 N 1.46498 * 109.47348 * 120.00044 * 2 1 3 13 13 C 1.46498 * 119.99874 * 60.00075 * 12 2 1 14 14 S 1.65595 * 120.00275 * 239.99785 * 12 2 1 15 15 O 1.42105 * 106.40149 * 23.54018 * 14 12 2 16 16 O 1.42098 * 106.40317 * 156.45891 * 14 12 2 17 17 N 1.65606 * 107.22013 * 270.00200 * 14 12 2 18 18 C 1.46500 * 120.00055 * 64.99549 * 17 14 12 19 19 H 1.08997 * 110.01761 * 336.39592 * 18 17 14 20 20 C 1.53873 * 110.03032 * 97.83741 * 18 17 14 21 21 C 1.54263 * 106.60061 * 119.28172 * 20 18 17 22 22 C 1.54893 * 104.19622 * 336.38998 * 21 20 18 23 23 C 1.54264 * 110.02842 * 215.00151 * 18 17 14 24 24 H 1.09004 * 110.48345 * 145.64983 * 23 18 17 25 25 C 1.50696 * 110.49198 * 23.00802 * 23 18 17 26 26 O 1.20833 * 119.99745 * 359.97438 * 25 23 18 27 27 O 1.34227 * 120.00404 * 180.02562 * 25 23 18 28 28 H 1.09000 * 109.47139 * 300.00085 * 1 2 3 29 29 H 1.09000 * 109.47570 * 59.99552 * 1 2 3 30 30 H 1.08997 * 109.47444 * 179.97438 * 1 2 3 31 31 H 0.96991 * 120.00109 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47325 * 269.99908 * 13 12 2 33 33 H 1.09004 * 109.47539 * 29.99621 * 13 12 2 34 34 H 1.08996 * 109.47424 * 150.00237 * 13 12 2 35 35 H 0.97002 * 119.99610 * 244.99510 * 17 14 12 36 36 H 1.08999 * 110.03062 * 238.56767 * 20 18 17 37 37 H 1.09000 * 110.03293 * 0.02562 * 20 18 17 38 38 H 1.08998 * 110.48868 * 217.71056 * 21 20 18 39 39 H 1.09002 * 110.59326 * 95.12029 * 21 20 18 40 40 H 1.08993 * 110.75389 * 279.62455 * 22 21 20 41 41 H 1.09005 * 110.75593 * 156.25158 * 22 21 20 42 42 H 0.96700 * 117.00130 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8256 -2.5202 -4.0078 10 1 1.8258 -0.4206 -5.2205 11 1 3.8062 -1.1208 -4.0082 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 16 2.9704 0.1141 2.2861 15 8 2.6904 1.4973 2.1192 16 8 2.8228 -0.5646 3.5258 17 7 4.5438 -0.1043 1.8179 18 6 5.0139 0.4529 0.5471 19 1 4.1729 0.5966 -0.1312 20 6 5.7298 1.7928 0.7919 21 6 7.1788 1.6159 0.2932 22 6 7.4182 0.0869 0.3562 23 6 6.0529 -0.4916 -0.0917 24 1 5.9685 -0.4724 -1.1783 25 6 5.8790 -1.8956 0.4274 26 8 5.0121 -2.1387 1.2332 27 8 6.6878 -2.8759 -0.0046 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7088 1.1614 -3.4843 32 1 0.7375 -2.1444 1.9993 33 1 1.5294 -2.5969 0.4707 34 1 2.4628 -2.5819 1.9863 35 1 5.1540 -0.6011 2.3850 36 1 5.2365 2.5874 0.2319 37 1 5.7278 2.0283 1.8561 38 1 7.8747 2.1383 0.9496 39 1 7.2784 1.9757 -0.7309 40 1 7.6550 -0.2254 1.3732 41 1 8.2083 -0.2092 -0.3340 42 1 6.5380 -3.7600 0.3572 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573536284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:20 Heat of formation + Delta-G solvation = -178.395916 kcal Electronic energy + Delta-G solvation = -28083.918034 eV Core-core repulsion = 24190.302860 eV Total energy + Delta-G solvation = -3893.615175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57984 -38.99495 -38.19264 -37.82388 -36.91746 -36.81874 -34.46521 -34.04215 -30.88409 -30.54869 -28.25749 -27.24046 -26.96683 -24.03754 -22.55007 -21.62435 -21.02305 -20.55598 -19.01720 -18.68253 -18.36941 -18.26951 -17.63611 -16.89222 -16.61350 -16.45275 -16.07648 -15.64965 -15.16295 -14.94860 -14.83515 -14.46097 -14.12911 -13.76181 -13.67322 -13.35965 -13.29497 -13.15074 -13.10564 -12.98035 -12.89011 -12.71572 -12.66236 -12.44150 -12.23194 -12.14112 -12.09226 -11.98079 -11.84390 -11.81604 -11.45501 -11.26498 -11.09912 -10.46415 -10.05569 -9.59691 -8.05372 -6.19920 -0.15736 1.34628 1.46064 1.48828 1.55205 2.07153 2.23796 2.47284 2.72696 3.22062 3.38217 3.53102 3.63560 4.04897 4.16731 4.35932 4.41182 4.47844 4.51164 4.62529 4.70905 4.75548 4.79486 4.80681 4.98599 5.02253 5.08157 5.15388 5.22615 5.25068 5.26912 5.37070 5.50868 5.62907 5.72302 5.74835 5.87290 6.11564 6.31690 6.37548 6.88538 7.14943 7.49020 8.98823 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.007820 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.525410 B = 3579.902255 C = 4578.982004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.274 3.726 3 H 0.028 0.972 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.022 3.978 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.278 1.278 10 H -0.290 1.290 11 H -0.262 1.262 12 N -0.993 5.993 13 C 0.115 3.885 14 S 2.797 3.203 15 O -1.018 7.018 16 O -1.019 7.019 17 N -1.087 6.087 18 C 0.157 3.843 19 H 0.081 0.919 20 C -0.141 4.141 21 C -0.113 4.113 22 C -0.100 4.100 23 C -0.093 4.093 24 H 0.126 0.874 25 C 0.490 3.510 26 O -0.523 6.523 27 O -0.513 6.513 28 H 0.015 0.985 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.263 0.737 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.419 0.581 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.984 -4.165 2.972 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.046 0.954 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.178 4.178 7 N -0.554 5.554 8 Si 0.776 3.224 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.187 1.187 12 N -0.834 5.834 13 C -0.031 4.031 14 S 2.806 3.194 15 O -1.001 7.001 16 O -1.004 7.004 17 N -0.851 5.851 18 C 0.048 3.952 19 H 0.099 0.901 20 C -0.181 4.181 21 C -0.151 4.151 22 C -0.137 4.137 23 C -0.114 4.114 24 H 0.144 0.856 25 C 0.333 3.667 26 O -0.412 6.412 27 O -0.326 6.326 28 H 0.034 0.966 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.257 0.743 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.121 0.879 42 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 14.299 -3.141 3.571 15.070 hybrid contribution -0.245 -1.335 -0.718 1.536 sum 14.054 -4.476 2.853 15.023 Atomic orbital electron populations 1.21956 0.98378 0.99767 0.99829 1.18418 0.91680 0.91429 0.81527 0.95418 1.21434 1.31478 1.12725 0.90349 0.91934 1.25608 0.95206 0.95506 1.01460 1.70002 1.37207 1.23850 1.24309 0.85732 0.79346 0.78417 0.78869 1.20328 1.21559 1.18671 1.57499 1.65381 1.21960 1.38574 1.21161 0.99488 0.80972 1.01513 1.01115 0.73443 0.72617 0.72230 1.93534 1.85066 1.34509 1.87027 1.93487 1.86696 1.76224 1.43945 1.55673 1.28916 1.69964 1.30594 1.21383 0.97238 0.92517 0.84024 0.90122 1.22709 0.97199 0.95748 1.02418 1.22347 0.94437 0.95464 1.02808 1.22503 0.93279 0.95303 1.02635 1.22169 0.98930 0.87089 1.03174 0.85601 1.23281 0.77433 0.87924 0.78053 1.90662 1.33569 1.83581 1.33366 1.84495 1.57717 1.22670 1.67735 0.96592 0.90972 0.94178 0.92742 0.93747 0.91092 0.91604 0.74261 0.91383 0.90948 0.89115 0.89855 0.90469 0.87917 0.71562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.87 8.97 71.98 0.65 -6.22 16 2 C 0.27 13.54 1.95 44.24 0.09 13.63 16 3 H 0.03 1.54 6.73 -2.39 -0.02 1.53 16 4 C -0.52 -25.90 7.38 25.60 0.19 -25.72 16 5 H 0.06 3.05 7.33 -2.91 -0.02 3.03 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -49.51 11.32 21.45 0.24 -49.27 16 8 Si 0.95 39.96 29.54 68.60 2.03 41.98 16 9 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 12 N -0.99 -43.35 3.12 -520.47 -1.62 -44.98 16 13 C 0.11 4.45 9.28 127.77 1.19 5.64 16 14 S 2.80 117.93 6.01 -56.49 -0.34 117.59 16 15 O -1.02 -48.72 16.46 -128.00 -2.11 -50.83 16 16 O -1.02 -45.49 17.21 -128.00 -2.20 -47.69 16 17 N -1.09 -36.57 3.30 -166.38 -0.55 -37.12 16 18 C 0.16 4.89 3.29 45.71 0.15 5.04 16 19 H 0.08 3.14 6.47 -2.39 -0.02 3.12 16 20 C -0.14 -3.71 6.59 31.32 0.21 -3.50 16 21 C -0.11 -1.97 6.83 31.67 0.22 -1.75 16 22 C -0.10 -1.67 6.32 31.89 0.20 -1.47 16 23 C -0.09 -2.25 3.32 -10.47 -0.03 -2.28 16 24 H 0.13 2.99 8.14 -2.38 -0.02 2.97 16 25 C 0.49 12.40 7.34 71.23 0.52 12.92 16 26 O -0.52 -16.16 13.53 21.94 0.30 -15.87 16 27 O -0.51 -9.65 13.42 -51.39 -0.69 -10.34 16 28 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 30 H 0.04 1.84 7.67 -2.39 -0.02 1.83 16 31 H 0.26 13.67 8.31 -92.72 -0.77 12.90 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 2.77 7.02 -2.39 -0.02 2.75 16 34 H 0.07 2.40 7.68 -2.39 -0.02 2.38 16 35 H 0.42 12.58 7.01 -96.74 -0.68 11.90 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 1.92 7.92 -2.39 -0.02 1.90 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16 41 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.42 4.72 9.10 -74.06 -0.67 4.04 16 Total: -1.00 -67.92 348.18 -1.42 -69.35 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.30 Total: 29.31 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 3.82 Total: -2.14 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -1.93 Total: -131.37 kcal Atomic # 8 Polarization: -120.02 SS G_CDS: -4.70 Total: -124.72 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 16 Polarization: 117.93 SS G_CDS: -0.34 Total: 117.59 kcal Total: -67.92 -1.42 -69.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573536284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.050 kcal (2) G-P(sol) polarization free energy of solvation -67.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds