Wall clock time and date at job start Tue Mar 31 2020 13:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46733 * 2 1 4 4 C 1.50692 * 109.47396 * 119.99918 * 2 1 3 5 5 H 1.08003 * 120.00374 * 119.99625 * 4 2 1 6 6 C 1.37880 * 120.00289 * 300.00287 * 4 2 1 7 7 N 1.31516 * 119.99357 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00498 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47234 * 89.99480 * 8 6 4 10 10 H 1.48503 * 109.47421 * 209.99948 * 8 6 4 11 11 H 1.48501 * 109.46751 * 329.99588 * 8 6 4 12 12 N 1.46502 * 109.47124 * 240.00236 * 2 1 3 13 13 C 1.46500 * 119.99798 * 300.00060 * 12 2 1 14 14 S 1.65597 * 120.00320 * 119.99595 * 12 2 1 15 15 O 1.42100 * 106.40286 * 156.46123 * 14 12 2 16 16 O 1.42106 * 106.39786 * 23.53940 * 14 12 2 17 17 N 1.65595 * 107.22012 * 270.00210 * 14 12 2 18 18 C 1.47422 * 125.64931 * 269.96901 * 17 14 12 19 19 H 1.09000 * 110.45735 * 37.03231 * 18 17 14 20 20 C 1.52997 * 110.36991 * 274.75459 * 18 17 14 21 21 C 1.54908 * 104.83357 * 155.91537 * 18 17 14 22 22 C 1.55156 * 101.58197 * 37.01425 * 21 18 17 23 23 C 1.47031 * 125.64931 * 90.02324 * 17 14 12 24 24 H 1.08994 * 109.87878 * 300.42970 * 23 17 14 25 25 C 1.50702 * 109.88194 * 61.59775 * 23 17 14 26 26 O 1.20825 * 119.99780 * 359.25653 * 25 23 17 27 27 O 1.34224 * 119.99944 * 179.26542 * 25 23 17 28 28 H 1.08996 * 109.47005 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46777 * 300.00017 * 1 2 3 30 30 H 1.09005 * 109.47054 * 59.99724 * 1 2 3 31 31 H 0.97004 * 119.99642 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.46779 * 269.99905 * 13 12 2 33 33 H 1.09002 * 109.47284 * 29.99358 * 13 12 2 34 34 H 1.08999 * 109.47587 * 149.99663 * 13 12 2 35 35 H 1.09001 * 109.47385 * 303.14073 * 20 18 17 36 36 H 1.09003 * 109.46890 * 63.13378 * 20 18 17 37 37 H 1.08994 * 109.47302 * 183.13127 * 20 18 17 38 38 H 1.08999 * 111.00895 * 278.93886 * 21 18 17 39 39 H 1.09000 * 111.04072 * 155.09810 * 21 18 17 40 40 H 1.09001 * 110.72147 * 206.13384 * 22 21 18 41 41 H 1.08997 * 110.72273 * 82.85614 * 22 21 18 42 42 H 0.96699 * 117.00289 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3215 -1.1202 4.0079 9 1 3.6298 -0.5459 4.4123 10 1 1.3432 -0.9492 5.1121 11 1 2.4859 -2.5661 3.7119 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1142 -2.2863 15 8 3.7118 -0.8789 -2.9816 16 8 3.5793 1.1830 -1.5749 17 7 1.9606 0.8090 -3.3998 18 6 1.5007 0.1816 -4.6520 19 1 1.3247 -0.8836 -4.5022 20 6 2.5275 0.3993 -5.7652 21 6 0.1738 0.9043 -4.9937 22 6 0.4874 2.3576 -4.5497 23 6 1.3753 2.1544 -3.3039 24 1 0.7701 2.2317 -2.4007 25 6 2.4704 3.1894 -3.2807 26 8 3.6278 2.8453 -3.3246 27 8 2.1601 4.4934 -3.2111 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1618 3.4844 32 1 2.4158 -2.7376 -0.9717 33 1 0.6905 -2.3002 -0.9846 34 1 1.6237 -2.2852 -2.5002 35 1 2.7032 1.4673 -5.8938 36 1 3.4626 -0.0932 -5.4983 37 1 2.1484 -0.0214 -6.6965 38 1 -0.6554 0.4908 -4.4197 39 1 -0.0327 0.8585 -6.0630 40 1 -0.4287 2.8871 -4.2881 41 1 1.0326 2.8898 -5.3291 42 1 2.8965 5.1199 -3.1992 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573577311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:24 Heat of formation + Delta-G solvation = -155.372373 kcal Electronic energy + Delta-G solvation = -27855.245442 eV Core-core repulsion = 23962.628643 eV Total energy + Delta-G solvation = -3892.616799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43749 -38.37030 -36.62364 -36.17532 -35.82526 -35.06961 -32.58222 -31.43706 -30.95170 -29.10767 -26.99379 -25.59074 -25.14149 -23.22889 -21.36255 -21.02674 -20.57313 -18.42885 -17.93276 -17.48718 -17.08733 -16.50012 -16.19622 -15.45549 -15.25525 -14.94909 -14.48620 -14.04251 -13.70895 -13.51513 -13.17550 -13.14945 -12.95075 -12.77578 -12.45034 -12.18543 -11.96581 -11.92062 -11.69579 -11.44782 -11.37383 -11.31900 -11.19538 -11.13088 -10.96365 -10.82853 -10.81055 -10.76995 -10.48000 -10.30137 -10.26998 -10.00349 -9.28984 -9.06694 -8.45758 -7.98124 -6.08219 -4.14357 1.11595 2.42201 3.02118 3.29392 3.35764 3.38677 3.48598 4.14101 4.27259 4.39245 4.44178 4.79177 4.99475 5.08822 5.12203 5.23448 5.28324 5.44910 5.49437 5.56344 5.61889 5.66792 5.73145 5.85065 5.96967 6.13267 6.17813 6.30543 6.38151 6.44579 6.61426 6.66295 6.74866 6.78635 6.98669 7.45137 7.62049 7.77624 8.02504 8.07498 8.26594 8.87807 9.51454 10.97640 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.005304 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.391373 B = 5278.219667 C = 5677.209259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.267 3.733 3 H 0.056 0.944 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.991 5.991 13 C 0.110 3.890 14 S 2.787 3.213 15 O -0.987 6.987 16 O -0.952 6.952 17 N -0.999 5.999 18 C 0.146 3.854 19 H 0.088 0.912 20 C -0.166 4.166 21 C -0.125 4.125 22 C -0.111 4.111 23 C 0.164 3.836 24 H 0.118 0.882 25 C 0.460 3.540 26 O -0.484 6.484 27 O -0.517 6.517 28 H 0.034 0.966 29 H 0.093 0.907 30 H 0.010 0.990 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 2.703 -16.058 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.074 0.926 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.834 5.834 13 C -0.037 4.037 14 S 2.798 3.202 15 O -0.971 6.971 16 O -0.936 6.936 17 N -0.835 5.835 18 C 0.040 3.960 19 H 0.106 0.894 20 C -0.225 4.225 21 C -0.163 4.163 22 C -0.150 4.150 23 C 0.055 3.945 24 H 0.135 0.865 25 C 0.298 3.702 26 O -0.369 6.369 27 O -0.329 6.329 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -4.479 2.444 -15.857 16.658 hybrid contribution 0.517 -0.017 1.057 1.177 sum -3.962 2.427 -14.800 15.513 Atomic orbital electron populations 1.22129 0.98236 0.99831 1.00543 1.18731 0.91291 0.92927 0.80636 0.92615 1.21324 1.31525 1.13004 0.90001 0.91967 1.24905 0.94935 0.95029 0.99003 1.69853 1.36603 1.22735 1.23789 0.86490 0.78685 0.79991 0.82224 1.20544 1.21142 1.19845 1.57904 1.70342 1.19737 1.35407 1.21146 1.01736 0.82148 0.98638 1.01922 0.73222 0.73047 0.71990 1.93522 1.68302 1.60440 1.74821 1.93630 1.72868 1.55397 1.71693 1.59605 1.67528 1.21692 1.34681 1.21544 0.93432 0.97417 0.83583 0.89394 1.22215 1.00115 1.02345 0.97792 1.22870 0.97028 0.94346 1.02105 1.22564 0.99344 0.98119 0.94986 1.20715 0.90607 0.80265 1.02895 0.86472 1.23849 0.90737 0.82739 0.72825 1.90758 1.21636 1.81257 1.43253 1.84475 1.44606 1.17807 1.85979 0.94651 0.88831 0.97105 0.92699 0.93249 0.90927 0.93464 0.92482 0.91298 0.91530 0.89793 0.89605 0.88706 0.90294 0.73338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.95 37.16 0.33 -2.93 16 2 C 0.27 6.55 2.62 -69.08 -0.18 6.37 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -14.12 8.37 -34.44 -0.29 -14.41 16 5 H 0.06 1.70 7.65 -52.48 -0.40 1.30 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.74 11.32 55.43 0.63 -24.11 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 12 N -0.99 -21.11 3.12 -115.85 -0.36 -21.48 16 13 C 0.11 1.99 9.53 59.85 0.57 2.56 16 14 S 2.79 59.13 5.94 -107.50 -0.64 58.49 16 15 O -0.99 -21.91 16.49 -57.17 -0.94 -22.85 16 16 O -0.95 -23.97 13.55 -66.60 -0.90 -24.87 16 17 N -1.00 -16.07 2.84 -98.72 -0.28 -16.35 16 18 C 0.15 1.79 3.42 -66.42 -0.23 1.56 16 19 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 20 C -0.17 -1.97 9.49 37.16 0.35 -1.61 16 21 C -0.12 -1.08 6.56 -24.58 -0.16 -1.24 16 22 C -0.11 -1.05 6.06 -24.90 -0.15 -1.20 16 23 C 0.16 2.33 3.58 -68.10 -0.24 2.09 16 24 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 25 C 0.46 7.34 7.00 36.01 0.25 7.59 16 26 O -0.48 -9.65 14.60 -26.39 -0.39 -10.03 16 27 O -0.52 -6.34 13.39 -39.24 -0.53 -6.87 16 28 H 0.03 0.73 6.66 -51.93 -0.35 0.39 16 29 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 34 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 35 H 0.06 0.68 7.46 -51.93 -0.39 0.29 16 36 H 0.07 0.99 7.84 -51.93 -0.41 0.59 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.54 8.04 -51.93 -0.42 0.13 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.69 7.46 -51.93 -0.39 0.30 16 42 H 0.41 3.42 9.10 45.56 0.41 3.83 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -35.57 349.72 -8.44 -44.00 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.44 Total: 2.10 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 0.16 Total: 0.41 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -0.01 Total: -61.93 kcal Atomic # 8 Polarization: -61.86 SS G_CDS: -2.76 Total: -64.62 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 59.13 SS G_CDS: -0.64 Total: 58.49 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.57 -8.44 -44.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573577311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.369 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds