Wall clock time and date at job start Tue Mar 31 2020 13:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46733 * 2 1 4 4 C 1.50692 * 109.47396 * 119.99918 * 2 1 3 5 5 H 1.08003 * 120.00374 * 119.99625 * 4 2 1 6 6 C 1.37880 * 120.00289 * 300.00287 * 4 2 1 7 7 N 1.31516 * 119.99357 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00498 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47234 * 89.99480 * 8 6 4 10 10 H 1.48503 * 109.47421 * 209.99948 * 8 6 4 11 11 H 1.48501 * 109.46751 * 329.99588 * 8 6 4 12 12 N 1.46502 * 109.47124 * 240.00236 * 2 1 3 13 13 C 1.46500 * 119.99798 * 300.00060 * 12 2 1 14 14 S 1.65597 * 120.00320 * 119.99595 * 12 2 1 15 15 O 1.42100 * 106.40286 * 156.46123 * 14 12 2 16 16 O 1.42106 * 106.39786 * 23.53940 * 14 12 2 17 17 N 1.65595 * 107.22012 * 270.00210 * 14 12 2 18 18 C 1.47422 * 125.64931 * 269.96901 * 17 14 12 19 19 H 1.09000 * 110.45735 * 37.03231 * 18 17 14 20 20 C 1.52997 * 110.36991 * 274.75459 * 18 17 14 21 21 C 1.54908 * 104.83357 * 155.91537 * 18 17 14 22 22 C 1.55156 * 101.58197 * 37.01425 * 21 18 17 23 23 C 1.47031 * 125.64931 * 90.02324 * 17 14 12 24 24 H 1.08994 * 109.87878 * 300.42970 * 23 17 14 25 25 C 1.50702 * 109.88194 * 61.59775 * 23 17 14 26 26 O 1.20825 * 119.99780 * 359.25653 * 25 23 17 27 27 O 1.34224 * 119.99944 * 179.26542 * 25 23 17 28 28 H 1.08996 * 109.47005 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46777 * 300.00017 * 1 2 3 30 30 H 1.09005 * 109.47054 * 59.99724 * 1 2 3 31 31 H 0.97004 * 119.99642 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.46779 * 269.99905 * 13 12 2 33 33 H 1.09002 * 109.47284 * 29.99358 * 13 12 2 34 34 H 1.08999 * 109.47587 * 149.99663 * 13 12 2 35 35 H 1.09001 * 109.47385 * 303.14073 * 20 18 17 36 36 H 1.09003 * 109.46890 * 63.13378 * 20 18 17 37 37 H 1.08994 * 109.47302 * 183.13127 * 20 18 17 38 38 H 1.08999 * 111.00895 * 278.93886 * 21 18 17 39 39 H 1.09000 * 111.04072 * 155.09810 * 21 18 17 40 40 H 1.09001 * 110.72147 * 206.13384 * 22 21 18 41 41 H 1.08997 * 110.72273 * 82.85614 * 22 21 18 42 42 H 0.96699 * 117.00289 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3215 -1.1202 4.0079 9 1 3.6298 -0.5459 4.4123 10 1 1.3432 -0.9492 5.1121 11 1 2.4859 -2.5661 3.7119 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1142 -2.2863 15 8 3.7118 -0.8789 -2.9816 16 8 3.5793 1.1830 -1.5749 17 7 1.9606 0.8090 -3.3998 18 6 1.5007 0.1816 -4.6520 19 1 1.3247 -0.8836 -4.5022 20 6 2.5275 0.3993 -5.7652 21 6 0.1738 0.9043 -4.9937 22 6 0.4874 2.3576 -4.5497 23 6 1.3753 2.1544 -3.3039 24 1 0.7701 2.2317 -2.4007 25 6 2.4704 3.1894 -3.2807 26 8 3.6278 2.8453 -3.3246 27 8 2.1601 4.4934 -3.2111 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1618 3.4844 32 1 2.4158 -2.7376 -0.9717 33 1 0.6905 -2.3002 -0.9846 34 1 1.6237 -2.2852 -2.5002 35 1 2.7032 1.4673 -5.8938 36 1 3.4626 -0.0932 -5.4983 37 1 2.1484 -0.0214 -6.6965 38 1 -0.6554 0.4908 -4.4197 39 1 -0.0327 0.8585 -6.0630 40 1 -0.4287 2.8871 -4.2881 41 1 1.0326 2.8898 -5.3291 42 1 2.8965 5.1199 -3.1992 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573577311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:23 Heat of formation + Delta-G solvation = -182.419219 kcal Electronic energy + Delta-G solvation = -27856.418281 eV Core-core repulsion = 23962.628643 eV Total energy + Delta-G solvation = -3893.789638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59568 -39.41031 -38.34709 -37.92163 -37.07077 -36.81203 -34.55516 -32.43761 -31.94431 -30.93057 -27.97121 -27.30305 -27.02196 -24.19050 -22.80568 -22.16438 -21.93597 -19.79861 -19.13480 -19.00327 -18.64969 -18.22048 -17.66977 -17.10102 -16.49277 -16.44664 -15.89911 -15.37693 -15.12140 -14.88811 -14.71259 -14.50006 -14.11978 -14.03575 -13.72520 -13.41569 -13.34622 -13.18881 -13.13604 -13.04283 -13.00141 -12.83442 -12.81388 -12.64087 -12.56573 -12.42966 -12.23497 -12.15568 -11.92926 -11.69061 -11.63174 -11.37530 -11.17576 -10.53720 -10.27552 -9.70923 -8.14455 -6.27707 -0.47137 1.20769 1.39706 1.42267 1.51113 1.88114 2.09237 2.41233 2.66556 3.13739 3.14559 3.40289 3.77057 3.94753 4.10251 4.14777 4.20248 4.36464 4.54381 4.59646 4.65209 4.66577 4.78861 4.84322 4.98691 5.00626 5.00899 5.10452 5.12639 5.15911 5.21145 5.26008 5.42150 5.44465 5.59655 5.60886 5.76931 5.85714 6.13169 6.28819 6.78964 6.97023 7.41057 8.89717 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.005304 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.391373 B = 5278.219667 C = 5677.209259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.019 0.981 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.267 1.267 12 N -0.997 5.997 13 C 0.103 3.897 14 S 2.799 3.201 15 O -1.006 7.006 16 O -1.002 7.002 17 N -0.997 5.997 18 C 0.129 3.871 19 H 0.095 0.905 20 C -0.164 4.164 21 C -0.109 4.109 22 C -0.101 4.101 23 C 0.152 3.848 24 H 0.115 0.885 25 C 0.457 3.543 26 O -0.534 6.534 27 O -0.504 6.504 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.265 0.735 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.032 0.968 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 2.417 -17.794 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.036 0.964 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.211 1.211 10 H -0.199 1.199 11 H -0.191 1.191 12 N -0.839 5.839 13 C -0.042 4.042 14 S 2.811 3.189 15 O -0.990 6.990 16 O -0.986 6.986 17 N -0.837 5.837 18 C 0.025 3.975 19 H 0.113 0.887 20 C -0.223 4.223 21 C -0.148 4.148 22 C -0.140 4.140 23 C 0.043 3.957 24 H 0.133 0.867 25 C 0.298 3.702 26 O -0.423 6.423 27 O -0.317 6.317 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.106 0.894 42 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -6.874 2.157 -17.598 19.016 hybrid contribution 1.282 0.153 1.513 1.989 sum -5.592 2.310 -16.085 17.186 Atomic orbital electron populations 1.21904 0.96091 1.00524 1.00793 1.18420 0.92727 0.90958 0.80975 0.96365 1.21638 1.31778 1.13047 0.91659 0.92987 1.25607 0.95164 0.95742 1.01524 1.69958 1.37117 1.23513 1.24416 0.85632 0.77968 0.79207 0.79296 1.21115 1.19930 1.19140 1.57768 1.70236 1.21018 1.34897 1.21357 1.01845 0.80196 1.00798 1.01173 0.73437 0.72253 0.72074 1.93482 1.69437 1.61110 1.74993 1.93558 1.74741 1.56933 1.73370 1.59130 1.66924 1.22748 1.34886 1.22022 0.95459 0.98269 0.81741 0.88698 1.22219 0.98694 1.02018 0.99362 1.22904 0.94781 0.92625 1.04451 1.22681 0.99324 0.99317 0.92650 1.21145 0.90455 0.78658 1.05465 0.86730 1.24347 0.90497 0.83899 0.71441 1.90745 1.23628 1.82119 1.45785 1.84434 1.45281 1.16853 1.85088 0.93610 0.91392 0.93933 0.92530 0.94427 0.89743 0.90275 0.92772 0.94828 0.87848 0.88534 0.86113 0.85866 0.89362 0.71419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 8.95 71.98 0.64 -5.15 16 2 C 0.27 13.63 2.62 44.24 0.12 13.75 16 3 H 0.02 1.05 6.91 -2.39 -0.02 1.04 16 4 C -0.54 -30.05 8.37 25.60 0.21 -29.84 16 5 H 0.05 2.91 7.65 -2.91 -0.02 2.89 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.91 -51.20 11.32 21.45 0.24 -50.95 16 8 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 9 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 N -1.00 -42.75 3.12 -520.43 -1.62 -44.38 16 13 C 0.10 3.66 9.53 127.77 1.22 4.88 16 14 S 2.80 121.46 5.94 -56.49 -0.34 121.13 16 15 O -1.01 -45.67 16.49 -128.00 -2.11 -47.78 16 16 O -1.00 -53.02 13.55 -118.98 -1.61 -54.63 16 17 N -1.00 -31.28 2.84 -466.23 -1.32 -32.60 16 18 C 0.13 2.83 3.42 45.47 0.16 2.99 16 19 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 20 C -0.16 -3.59 9.49 71.98 0.68 -2.90 16 21 C -0.11 -1.36 6.56 31.99 0.21 -1.15 16 22 C -0.10 -1.51 6.06 31.78 0.19 -1.32 16 23 C 0.15 4.09 3.58 44.59 0.16 4.25 16 24 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 25 C 0.46 14.56 7.00 71.24 0.50 15.06 16 26 O -0.53 -22.02 14.60 29.27 0.43 -21.59 16 27 O -0.50 -11.87 13.39 -51.36 -0.69 -12.55 16 28 H 0.04 1.84 6.66 -2.39 -0.02 1.83 16 29 H 0.07 3.33 6.07 -2.39 -0.01 3.31 16 30 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.08 2.76 6.43 -2.39 -0.02 2.74 16 34 H 0.08 2.25 7.79 -2.39 -0.02 2.23 16 35 H 0.05 1.20 7.46 -2.39 -0.02 1.18 16 36 H 0.03 0.96 7.84 -2.39 -0.02 0.94 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.12 0.77 8.04 -2.39 -0.02 0.75 16 40 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.20 7.46 -2.39 -0.02 1.18 16 42 H 0.42 6.81 9.10 -74.06 -0.67 6.14 16 Total: -1.00 -81.22 349.72 -0.09 -81.32 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.36 Total: 14.02 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 4.54 Total: 2.09 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -2.71 Total: -127.93 kcal Atomic # 8 Polarization: -132.58 SS G_CDS: -3.98 Total: -136.56 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 121.46 SS G_CDS: -0.34 Total: 121.13 kcal Total: -81.22 -0.09 -81.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573577311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.101 kcal (2) G-P(sol) polarization free energy of solvation -81.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds