Wall clock time and date at job start Tue Mar 31 2020 13:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46812 * 2 1 4 4 C 1.50700 * 109.47302 * 239.99850 * 2 1 3 5 5 O 1.20824 * 120.00207 * 240.00067 * 4 2 1 6 6 O 1.34226 * 119.99983 * 59.99908 * 4 2 1 7 7 N 1.46501 * 109.46985 * 119.99988 * 2 1 3 8 8 C 1.46502 * 120.00097 * 61.20914 * 7 2 1 9 9 C 1.52997 * 117.49843 * 3.23174 * 8 7 2 10 10 C 1.52993 * 117.50023 * 294.57191 * 8 7 2 11 11 S 1.65598 * 119.99964 * 241.48404 * 7 2 1 12 12 O 1.42101 * 106.40344 * 23.26913 * 11 7 2 13 13 O 1.42101 * 106.40496 * 156.18276 * 11 7 2 14 14 N 1.65599 * 107.21990 * 269.72560 * 11 7 2 15 15 C 1.46501 * 119.99922 * 90.00311 * 14 11 7 16 16 C 1.46499 * 119.99952 * 269.99674 * 14 11 7 17 17 H 1.08996 * 109.47091 * 0.02562 * 16 14 11 18 18 C 1.53001 * 109.46693 * 120.00417 * 16 14 11 19 19 C 1.50696 * 109.47066 * 240.00002 * 16 14 11 20 20 H 1.08000 * 120.00412 * 359.97438 * 19 16 14 21 21 C 1.37883 * 119.99987 * 179.97438 * 19 16 14 22 22 N 1.31512 * 119.99728 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00147 * 179.97438 * 21 19 16 24 24 H 1.48494 * 109.47108 * 60.00205 * 23 21 19 25 25 H 1.48503 * 109.46953 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47090 * 299.99868 * 23 21 19 27 27 H 1.08998 * 109.46735 * 52.72745 * 1 2 3 28 28 H 1.09000 * 109.47004 * 172.73017 * 1 2 3 29 29 H 1.09000 * 109.47185 * 292.72895 * 1 2 3 30 30 H 0.96697 * 117.00447 * 180.02562 * 6 4 2 31 31 H 1.09006 * 115.54850 * 148.89943 * 8 7 2 32 32 H 1.08997 * 117.49715 * 359.97438 * 9 8 7 33 33 H 1.08995 * 117.50189 * 145.01837 * 9 8 7 34 34 H 1.09006 * 117.49656 * 214.98209 * 10 8 7 35 35 H 1.09007 * 117.49961 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47720 * 89.99544 * 15 14 11 37 37 H 1.08996 * 109.47086 * 209.99956 * 15 14 11 38 38 H 1.09009 * 109.46793 * 329.99646 * 15 14 11 39 39 H 1.09001 * 109.47257 * 180.02562 * 18 16 14 40 40 H 1.09008 * 109.46868 * 299.99591 * 18 16 14 41 41 H 1.08996 * 109.47678 * 59.99759 * 18 16 14 42 42 H 0.96997 * 119.99955 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7271 -1.6928 -1.1196 6 8 1.7082 -0.2519 -2.4495 7 7 2.0184 -0.6906 1.1962 8 6 1.6864 -2.1007 1.4147 9 6 0.8908 -2.8168 0.3215 10 6 0.2156 -2.4526 1.6461 11 16 2.9398 0.1245 2.3047 12 8 2.6373 1.5033 2.1417 13 8 2.7864 -0.5642 3.5381 14 7 4.5235 -0.0628 1.8583 15 6 5.1483 0.9039 0.9521 16 6 5.2997 -1.1951 2.3697 17 1 4.6716 -1.8006 3.0232 18 6 5.7882 -2.0492 1.1981 19 6 6.4851 -0.6819 3.1459 20 1 6.6446 0.3814 3.2476 21 6 7.3660 -1.5698 3.7261 22 7 7.1720 -2.8646 3.6018 23 14 8.8358 -0.9337 4.6876 24 1 8.3622 -0.1038 5.8242 25 1 9.6225 -2.0816 5.2061 26 1 9.6916 -0.1101 3.7961 27 1 -0.3633 0.6224 -0.8178 28 1 -0.3633 -1.0194 -0.1300 29 1 -0.3633 0.3971 0.9479 30 1 2.0536 -0.7410 -3.2088 31 1 2.4339 -2.6813 1.9555 32 1 0.6140 -2.2387 -0.5600 33 1 1.1145 -3.8685 0.1433 34 1 -0.0046 -3.2649 2.3388 35 1 -0.5052 -1.6349 1.6361 36 1 5.5973 1.7093 1.5332 37 1 5.9198 0.4056 0.3651 38 1 4.3925 1.3161 0.2834 39 1 6.3654 -2.8920 1.5785 40 1 4.9307 -2.4204 0.6367 41 1 6.4161 -1.4440 0.5442 42 1 7.7915 -3.4893 4.0103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:32 Heat of formation + Delta-G solvation = -110.869548 kcal Electronic energy + Delta-G solvation = -27867.698734 eV Core-core repulsion = 23977.011722 eV Total energy + Delta-G solvation = -3890.687012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76421 -38.18175 -36.85419 -36.15834 -35.99261 -35.30480 -33.87234 -32.56898 -30.52490 -29.06272 -25.59343 -25.15490 -25.08243 -22.38808 -22.33224 -21.08641 -20.48352 -19.02048 -18.02927 -17.53885 -17.04921 -16.82123 -16.27672 -15.63669 -15.37653 -15.01629 -14.71928 -14.32490 -13.66713 -13.54127 -13.44719 -13.24782 -13.11624 -12.78238 -12.44288 -12.05583 -11.86878 -11.79394 -11.70626 -11.54494 -11.34158 -11.31390 -11.28237 -11.19229 -11.05164 -10.94045 -10.77560 -10.46224 -10.45557 -10.23397 -10.11216 -9.96515 -9.22894 -8.80813 -8.42560 -7.96332 -6.04549 -4.11302 0.99312 2.15602 2.80093 3.27209 3.31894 3.36039 3.39467 3.80681 4.10948 4.41577 4.53753 4.62695 4.78773 4.94826 5.02249 5.07375 5.14657 5.24646 5.27233 5.45626 5.54344 5.62506 5.71320 5.82507 6.04104 6.11911 6.13973 6.28083 6.31840 6.41936 6.54458 6.66264 6.85380 6.95460 7.09409 7.47904 7.66779 7.81930 7.85405 8.08128 8.30778 8.90199 9.54098 11.00990 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.004990 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.478232 B = 5610.270407 C = 5651.691705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.159 3.841 3 H 0.134 0.866 4 C 0.458 3.542 5 O -0.476 6.476 6 O -0.520 6.520 7 N -0.965 5.965 8 C 0.105 3.895 9 C -0.172 4.172 10 C -0.203 4.203 11 S 2.775 3.225 12 O -0.991 6.991 13 O -0.958 6.958 14 N -0.985 5.985 15 C 0.111 3.889 16 C 0.270 3.730 17 H 0.058 0.942 18 C -0.148 4.148 19 C -0.521 4.521 20 H 0.061 0.939 21 C 0.064 3.936 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.408 0.592 31 H 0.138 0.862 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.090 0.910 40 H 0.019 0.981 41 H 0.030 0.970 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.279 2.741 -11.467 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.050 3.950 3 H 0.151 0.849 4 C 0.296 3.704 5 O -0.361 6.361 6 O -0.332 6.332 7 N -0.799 5.799 8 C -0.002 4.002 9 C -0.211 4.211 10 C -0.243 4.243 11 S 2.786 3.214 12 O -0.975 6.975 13 O -0.942 6.942 14 N -0.828 5.828 15 C -0.035 4.035 16 C 0.168 3.832 17 H 0.075 0.925 18 C -0.207 4.207 19 C -0.561 4.561 20 H 0.079 0.921 21 C -0.138 4.138 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.267 0.733 31 H 0.155 0.845 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.038 0.962 41 H 0.049 0.951 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.449 2.994 -10.268 17.184 hybrid contribution 1.363 -0.287 -0.461 1.467 sum -12.085 2.708 -10.729 16.386 Atomic orbital electron populations 1.22512 0.91818 1.04326 1.04153 1.20263 0.96967 0.96659 0.81156 0.84853 1.23877 0.78150 0.83538 0.84804 1.90817 1.33870 1.24747 1.86652 1.84524 1.72622 1.59285 1.16752 1.58086 1.67546 1.19979 1.34260 1.21269 0.94482 0.81443 1.03020 1.23343 1.03613 1.01455 0.92661 1.23722 0.96725 1.04020 0.99805 1.02271 0.72739 0.72863 0.73548 1.93539 1.84857 1.32221 1.86868 1.93616 1.85753 1.75073 1.39711 1.57743 1.26996 1.37317 1.60711 1.21129 0.97980 0.91845 0.92562 1.18740 0.91196 0.81581 0.91725 0.92474 1.22095 0.99351 1.01678 0.97581 1.21293 1.08705 0.93404 1.32656 0.92064 1.24901 0.97972 0.94831 0.96122 1.69855 1.37483 1.01007 1.44468 0.86556 0.82213 0.78287 0.80324 1.20157 1.21214 1.20275 0.90228 0.90207 0.90254 0.73325 0.84500 0.88948 0.88130 0.88033 0.88138 0.93031 0.90863 0.93964 0.89101 0.96175 0.95117 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 7.76 37.16 0.29 -1.36 16 2 C 0.16 2.02 3.05 -69.08 -0.21 1.81 16 3 H 0.13 1.65 6.93 -51.93 -0.36 1.29 16 4 C 0.46 5.68 5.85 36.01 0.21 5.89 16 5 O -0.48 -7.34 14.52 -18.75 -0.27 -7.61 16 6 O -0.52 -4.68 13.35 -39.25 -0.52 -5.21 16 7 N -0.97 -15.22 2.88 -101.51 -0.29 -15.51 16 8 C 0.10 1.59 5.26 -67.93 -0.36 1.24 16 9 C -0.17 -2.12 7.57 -26.70 -0.20 -2.32 16 10 C -0.20 -2.45 9.63 -26.70 -0.26 -2.70 16 11 S 2.77 55.04 6.05 -107.50 -0.65 54.39 16 12 O -0.99 -19.85 15.78 -57.17 -0.90 -20.75 16 13 O -0.96 -22.24 15.94 -57.17 -0.91 -23.16 16 14 N -0.98 -20.92 3.12 -115.85 -0.36 -21.28 16 15 C 0.11 2.04 9.53 59.85 0.57 2.61 16 16 C 0.27 6.72 2.62 -69.08 -0.18 6.54 16 17 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 18 C -0.15 -3.49 8.95 37.16 0.33 -3.15 16 19 C -0.52 -14.20 8.37 -34.44 -0.29 -14.48 16 20 H 0.06 1.66 7.65 -52.49 -0.40 1.25 16 21 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 22 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 23 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.73 4.08 -51.93 -0.21 0.52 16 29 H 0.08 0.76 7.86 -51.93 -0.41 0.36 16 30 H 0.41 2.10 9.10 45.56 0.41 2.52 16 31 H 0.14 2.34 8.11 -51.93 -0.42 1.92 16 32 H 0.09 1.06 3.84 -51.93 -0.20 0.86 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.08 5.95 -51.93 -0.31 0.77 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.33 6.43 -51.93 -0.33 1.00 16 38 H 0.04 0.64 7.79 -51.92 -0.40 0.24 16 39 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 40 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 41 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -33.38 344.10 -8.21 -41.59 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.90 Total: 4.71 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.19 Total: -4.27 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.03 Total: -61.17 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -2.61 Total: -56.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 55.04 SS G_CDS: -0.65 Total: 54.39 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.38 -8.21 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.278 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds