Wall clock time and date at job start Tue Mar 31 2020 13:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46812 * 2 1 4 4 C 1.50700 * 109.47302 * 239.99850 * 2 1 3 5 5 O 1.20824 * 120.00207 * 240.00067 * 4 2 1 6 6 O 1.34226 * 119.99983 * 59.99908 * 4 2 1 7 7 N 1.46501 * 109.46985 * 119.99988 * 2 1 3 8 8 C 1.46502 * 120.00097 * 61.20914 * 7 2 1 9 9 C 1.52997 * 117.49843 * 3.23174 * 8 7 2 10 10 C 1.52993 * 117.50023 * 294.57191 * 8 7 2 11 11 S 1.65598 * 119.99964 * 241.48404 * 7 2 1 12 12 O 1.42101 * 106.40344 * 23.26913 * 11 7 2 13 13 O 1.42101 * 106.40496 * 156.18276 * 11 7 2 14 14 N 1.65599 * 107.21990 * 269.72560 * 11 7 2 15 15 C 1.46501 * 119.99922 * 90.00311 * 14 11 7 16 16 C 1.46499 * 119.99952 * 269.99674 * 14 11 7 17 17 H 1.08996 * 109.47091 * 0.02562 * 16 14 11 18 18 C 1.53001 * 109.46693 * 120.00417 * 16 14 11 19 19 C 1.50696 * 109.47066 * 240.00002 * 16 14 11 20 20 H 1.08000 * 120.00412 * 359.97438 * 19 16 14 21 21 C 1.37883 * 119.99987 * 179.97438 * 19 16 14 22 22 N 1.31512 * 119.99728 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00147 * 179.97438 * 21 19 16 24 24 H 1.48494 * 109.47108 * 60.00205 * 23 21 19 25 25 H 1.48503 * 109.46953 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47090 * 299.99868 * 23 21 19 27 27 H 1.08998 * 109.46735 * 52.72745 * 1 2 3 28 28 H 1.09000 * 109.47004 * 172.73017 * 1 2 3 29 29 H 1.09000 * 109.47185 * 292.72895 * 1 2 3 30 30 H 0.96697 * 117.00447 * 180.02562 * 6 4 2 31 31 H 1.09006 * 115.54850 * 148.89943 * 8 7 2 32 32 H 1.08997 * 117.49715 * 359.97438 * 9 8 7 33 33 H 1.08995 * 117.50189 * 145.01837 * 9 8 7 34 34 H 1.09006 * 117.49656 * 214.98209 * 10 8 7 35 35 H 1.09007 * 117.49961 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47720 * 89.99544 * 15 14 11 37 37 H 1.08996 * 109.47086 * 209.99956 * 15 14 11 38 38 H 1.09009 * 109.46793 * 329.99646 * 15 14 11 39 39 H 1.09001 * 109.47257 * 180.02562 * 18 16 14 40 40 H 1.09008 * 109.46868 * 299.99591 * 18 16 14 41 41 H 1.08996 * 109.47678 * 59.99759 * 18 16 14 42 42 H 0.96997 * 119.99955 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7271 -1.6928 -1.1196 6 8 1.7082 -0.2519 -2.4495 7 7 2.0184 -0.6906 1.1962 8 6 1.6864 -2.1007 1.4147 9 6 0.8908 -2.8168 0.3215 10 6 0.2156 -2.4526 1.6461 11 16 2.9398 0.1245 2.3047 12 8 2.6373 1.5033 2.1417 13 8 2.7864 -0.5642 3.5381 14 7 4.5235 -0.0628 1.8583 15 6 5.1483 0.9039 0.9521 16 6 5.2997 -1.1951 2.3697 17 1 4.6716 -1.8006 3.0232 18 6 5.7882 -2.0492 1.1981 19 6 6.4851 -0.6819 3.1459 20 1 6.6446 0.3814 3.2476 21 6 7.3660 -1.5698 3.7261 22 7 7.1720 -2.8646 3.6018 23 14 8.8358 -0.9337 4.6876 24 1 8.3622 -0.1038 5.8242 25 1 9.6225 -2.0816 5.2061 26 1 9.6916 -0.1101 3.7961 27 1 -0.3633 0.6224 -0.8178 28 1 -0.3633 -1.0194 -0.1300 29 1 -0.3633 0.3971 0.9479 30 1 2.0536 -0.7410 -3.2088 31 1 2.4339 -2.6813 1.9555 32 1 0.6140 -2.2387 -0.5600 33 1 1.1145 -3.8685 0.1433 34 1 -0.0046 -3.2649 2.3388 35 1 -0.5052 -1.6349 1.6361 36 1 5.5973 1.7093 1.5332 37 1 5.9198 0.4056 0.3651 38 1 4.3925 1.3161 0.2834 39 1 6.3654 -2.8920 1.5785 40 1 4.9307 -2.4204 0.6367 41 1 6.4161 -1.4440 0.5442 42 1 7.7915 -3.4893 4.0103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:31 Heat of formation + Delta-G solvation = -135.876195 kcal Electronic energy + Delta-G solvation = -27868.783103 eV Core-core repulsion = 23977.011722 eV Total energy + Delta-G solvation = -3891.771381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.74006 -39.18977 -38.48441 -37.93870 -36.98667 -36.89406 -34.92371 -34.55913 -31.56126 -30.95712 -27.32537 -27.05425 -26.01869 -23.45121 -23.32860 -22.66504 -21.86249 -20.23330 -19.38460 -18.75595 -18.55934 -18.24756 -17.96403 -17.03488 -16.59940 -16.46650 -16.05525 -15.67980 -15.25019 -14.90095 -14.67593 -14.52973 -14.33357 -14.14661 -13.78924 -13.46563 -13.40421 -13.27216 -13.19713 -13.04305 -13.00295 -12.81820 -12.64628 -12.62384 -12.46061 -12.22463 -12.20238 -12.15156 -12.00835 -11.88465 -11.44657 -11.18855 -11.15879 -10.52007 -9.95208 -9.69927 -8.12754 -6.27200 -0.52594 1.20785 1.41919 1.44016 1.51203 1.68190 2.12887 2.35909 2.45297 2.93551 3.15047 3.21225 3.54339 3.80929 3.89635 3.95516 4.02068 4.06452 4.14963 4.34705 4.58089 4.65926 4.71593 4.76046 4.81369 4.94028 4.98767 5.00884 5.10612 5.11499 5.14699 5.21354 5.26679 5.41292 5.58776 5.66006 5.72586 5.84250 6.09356 6.27349 6.79821 7.04328 7.41638 8.91445 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.004990 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.478232 B = 5610.270407 C = 5651.691705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 H 0.139 0.861 4 C 0.468 3.532 5 O -0.512 6.512 6 O -0.505 6.505 7 N -0.957 5.957 8 C 0.065 3.935 9 C -0.152 4.152 10 C -0.185 4.185 11 S 2.789 3.211 12 O -0.995 6.995 13 O -1.000 7.000 14 N -0.997 5.997 15 C 0.105 3.895 16 C 0.279 3.721 17 H 0.023 0.977 18 C -0.128 4.128 19 C -0.541 4.541 20 H 0.057 0.943 21 C 0.017 3.983 22 N -0.914 5.914 23 Si 0.958 3.042 24 H -0.277 1.277 25 H -0.281 1.281 26 H -0.267 1.267 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.428 0.572 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.036 0.964 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.515 3.706 -13.155 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.036 3.964 3 H 0.156 0.844 4 C 0.308 3.692 5 O -0.400 6.400 6 O -0.319 6.319 7 N -0.793 5.793 8 C -0.041 4.041 9 C -0.190 4.190 10 C -0.224 4.224 11 S 2.801 3.199 12 O -0.979 6.979 13 O -0.984 6.984 14 N -0.838 5.838 15 C -0.041 4.041 16 C 0.175 3.825 17 H 0.041 0.959 18 C -0.188 4.188 19 C -0.581 4.581 20 H 0.075 0.925 21 C -0.183 4.183 22 N -0.553 5.553 23 Si 0.783 3.217 24 H -0.203 1.203 25 H -0.206 1.206 26 H -0.191 1.191 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.290 0.710 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.686 3.991 -11.994 19.377 hybrid contribution 1.651 -0.561 -0.043 1.745 sum -13.034 3.430 -12.037 18.070 Atomic orbital electron populations 1.22544 0.89098 1.05413 1.05394 1.20656 0.99123 0.96422 0.80167 0.84403 1.23675 0.77263 0.82726 0.85574 1.90824 1.35524 1.26376 1.87263 1.84466 1.72036 1.59006 1.16345 1.57577 1.66628 1.20162 1.34948 1.21265 0.95778 0.81111 1.05959 1.23378 1.01511 1.01331 0.92805 1.23844 0.94481 1.04449 0.99625 1.01584 0.72487 0.72563 0.73260 1.93521 1.84786 1.32522 1.87039 1.93555 1.86221 1.75877 1.42745 1.57675 1.27834 1.36924 1.61386 1.21308 0.99013 0.91208 0.92530 1.18336 0.90252 0.82442 0.91507 0.95886 1.21840 0.99265 1.00550 0.97131 1.21615 1.09744 0.93338 1.33353 0.92458 1.25675 1.00549 0.95051 0.96998 1.69980 1.38335 1.01915 1.45068 0.85619 0.79197 0.77904 0.78965 1.20265 1.20590 1.19143 0.87531 0.89545 0.90118 0.71015 0.87744 0.87617 0.87865 0.87197 0.86333 0.93302 0.90900 0.90768 0.91605 0.95216 0.94492 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 7.76 71.98 0.56 -2.10 16 2 C 0.14 3.35 3.05 44.25 0.13 3.49 16 3 H 0.14 3.07 6.93 -2.39 -0.02 3.05 16 4 C 0.47 10.44 5.85 71.24 0.42 10.86 16 5 O -0.51 -15.05 14.52 21.97 0.32 -14.73 16 6 O -0.50 -7.30 13.35 -51.38 -0.69 -7.99 16 7 N -0.96 -29.63 2.88 -475.07 -1.37 -31.00 16 8 C 0.07 2.00 5.26 44.99 0.24 2.23 16 9 C -0.15 -3.49 7.57 30.62 0.23 -3.26 16 10 C -0.19 -4.15 9.63 30.61 0.29 -3.86 16 11 S 2.79 111.89 6.05 -56.49 -0.34 111.55 16 12 O -0.99 -39.20 15.78 -128.00 -2.02 -41.22 16 13 O -1.00 -48.33 15.94 -128.00 -2.04 -50.37 16 14 N -1.00 -42.98 3.12 -520.45 -1.62 -44.61 16 15 C 0.11 3.79 9.53 127.77 1.22 5.01 16 16 C 0.28 14.33 2.62 44.24 0.12 14.45 16 17 H 0.02 1.35 6.91 -2.39 -0.02 1.33 16 18 C -0.13 -6.22 8.95 71.98 0.64 -5.58 16 19 C -0.54 -30.15 8.37 25.60 0.21 -29.94 16 20 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 21 C 0.02 0.96 5.30 84.66 0.45 1.41 16 22 N -0.91 -52.63 11.32 21.45 0.24 -52.38 16 23 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 24 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.27 4.08 -2.39 -0.01 1.26 16 29 H 0.08 1.31 7.86 -2.39 -0.02 1.29 16 30 H 0.43 2.90 9.10 -74.06 -0.67 2.22 16 31 H 0.10 3.83 8.11 -2.38 -0.02 3.81 16 32 H 0.11 2.14 3.84 -2.39 -0.01 2.13 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.12 2.23 5.95 -2.38 -0.01 2.21 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 2.61 6.43 -2.39 -0.02 2.59 16 38 H 0.07 2.15 7.79 -2.38 -0.02 2.13 16 39 H 0.07 3.53 6.07 -2.39 -0.01 3.51 16 40 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.04 1.69 6.66 -2.39 -0.02 1.67 16 42 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -73.42 344.10 -0.59 -74.01 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.39 Total: 17.97 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 4.51 Total: -7.29 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -2.75 Total: -127.99 kcal Atomic # 8 Polarization: -109.88 SS G_CDS: -4.43 Total: -114.30 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 111.89 SS G_CDS: -0.34 Total: 111.55 kcal Total: -73.42 -0.59 -74.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.871 kcal (2) G-P(sol) polarization free energy of solvation -73.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds