Wall clock time and date at job start Tue Mar 31 2020 13:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46952 * 2 1 4 4 C 1.46498 * 119.99758 * 289.36570 * 3 2 1 5 5 C 1.50700 * 109.47195 * 275.00072 * 4 3 2 6 6 H 1.08000 * 120.00000 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00073 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99918 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99822 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47261 * 89.99729 * 9 7 5 11 11 H 1.48497 * 109.47190 * 209.99365 * 9 7 5 12 12 H 1.48497 * 109.47536 * 329.99812 * 9 7 5 13 13 S 1.65596 * 120.00280 * 109.36383 * 3 2 1 14 14 O 1.42106 * 106.39981 * 351.31735 * 13 3 2 15 15 O 1.42104 * 106.40317 * 218.39685 * 13 3 2 16 16 N 1.65595 * 107.21873 * 104.85725 * 13 3 2 17 17 C 1.46502 * 120.00086 * 262.07300 * 16 13 3 18 18 H 1.09000 * 109.47408 * 172.08170 * 17 16 13 19 19 C 1.52999 * 109.46994 * 52.08623 * 17 16 13 20 20 C 1.50696 * 109.47498 * 292.08820 * 17 16 13 21 21 O 1.20827 * 119.99547 * 358.66566 * 20 17 16 22 22 O 1.34226 * 120.00475 * 178.66862 * 20 17 16 23 23 C 1.46504 * 120.00201 * 82.07315 * 16 13 3 24 24 C 1.53000 * 117.49607 * 233.04036 * 23 16 13 25 25 C 1.52999 * 60.00024 * 252.50722 * 24 23 16 26 26 H 1.08999 * 109.47819 * 300.00165 * 1 2 3 27 27 H 1.09006 * 109.47354 * 60.00561 * 1 2 3 28 28 H 1.09003 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47154 * 239.99810 * 2 1 3 30 30 H 1.09000 * 109.47022 * 119.99724 * 2 1 3 31 31 H 1.09002 * 109.47106 * 34.99981 * 4 3 2 32 32 H 1.09003 * 109.47233 * 155.00077 * 4 3 2 33 33 H 0.96997 * 119.99525 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47441 * 298.90189 * 19 17 16 35 35 H 1.08997 * 109.47472 * 58.90467 * 19 17 16 36 36 H 1.08999 * 109.47452 * 178.90294 * 19 17 16 37 37 H 0.96703 * 117.00116 * 179.97438 * 22 20 17 38 38 H 1.08993 * 115.55830 * 18.72823 * 23 16 13 39 39 H 1.09004 * 117.49522 * 145.01996 * 24 23 16 40 40 H 1.08994 * 117.50114 * 359.97438 * 24 23 16 41 41 H 1.09002 * 117.49861 * 107.48943 * 25 24 23 42 42 H 1.08999 * 117.50318 * 252.51810 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.8658 2.2121 -1.1970 5 6 3.0173 1.9576 -2.1352 6 1 3.7861 1.2483 -1.8665 7 6 3.0899 2.6311 -3.3361 8 7 2.1540 3.4952 -3.6630 9 14 4.5177 2.3161 -4.4986 10 1 4.1672 1.2093 -5.4247 11 1 4.7991 3.5461 -5.2816 12 1 5.7218 1.9425 -3.7140 13 16 2.7426 2.0035 1.3529 14 8 2.5567 1.0442 2.3847 15 8 2.3064 3.3519 1.4575 16 7 4.3705 2.0605 1.0552 17 6 5.2434 0.9925 1.5490 18 1 6.2457 1.1248 1.1416 19 6 4.6889 -0.3638 1.1088 20 6 5.3016 1.0468 3.0539 21 8 4.6973 1.9058 3.6512 22 8 6.0248 0.1410 3.7308 23 6 4.9380 3.1789 0.2979 24 6 5.8059 2.8417 -0.9162 25 6 6.4536 3.3785 0.3617 26 1 -0.3635 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.9290 1.9626 -1.6954 32 1 1.8561 3.2637 -0.9105 33 1 2.2049 3.9687 -4.5080 34 1 3.6944 -0.5046 1.5322 35 1 4.6285 -0.3959 0.0210 36 1 5.3487 -1.1573 1.4596 37 1 6.0321 0.2166 4.6948 38 1 4.3149 4.0712 0.2390 39 1 5.7537 3.5124 -1.7740 40 1 5.9549 1.7879 -1.1513 41 1 7.0285 2.6778 0.9672 42 1 6.8274 4.4023 0.3449 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589729886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:03 Heat of formation + Delta-G solvation = -126.164659 kcal Electronic energy + Delta-G solvation = -28268.175667 eV Core-core repulsion = 24376.825409 eV Total energy + Delta-G solvation = -3891.350257 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.34486 -37.90642 -36.83614 -36.13805 -35.88885 -35.16387 -33.93045 -32.70082 -30.02787 -29.68633 -26.71148 -25.11823 -23.24904 -22.20210 -21.94080 -21.47191 -20.83101 -18.44019 -17.97761 -17.50657 -16.87353 -16.47539 -16.32404 -15.83480 -15.39595 -15.01877 -14.58245 -14.40423 -13.80604 -13.53374 -13.33082 -13.00162 -12.93484 -12.70195 -12.19348 -12.12060 -11.99788 -11.85537 -11.64552 -11.44997 -11.38591 -11.33077 -11.18755 -11.18063 -11.07744 -10.91977 -10.76868 -10.55902 -10.36669 -10.29978 -10.10584 -9.86818 -9.71495 -8.50798 -8.48810 -8.04628 -6.11250 -4.16019 1.18276 2.32126 2.90788 3.21035 3.28880 3.30812 3.41138 4.12516 4.27001 4.34523 4.74022 4.82451 4.96138 5.15610 5.22051 5.25787 5.36990 5.41624 5.46636 5.54054 5.65468 5.77116 5.83233 5.86819 5.94338 6.08398 6.23525 6.34747 6.39419 6.51965 6.54371 6.57748 6.63659 6.68201 6.88132 7.35771 7.43156 7.63267 7.85925 7.96605 8.15308 8.87825 9.48657 10.97060 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.007193 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.559337 B = 3891.764459 C = 4861.968330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.120 3.880 3 N -0.992 5.992 4 C 0.245 3.755 5 C -0.526 4.526 6 H 0.065 0.935 7 C 0.066 3.934 8 N -0.892 5.892 9 Si 0.884 3.116 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.266 1.266 13 S 2.796 3.204 14 O -0.991 6.991 15 O -0.977 6.977 16 N -0.956 5.956 17 C 0.168 3.832 18 H 0.129 0.871 19 C -0.189 4.189 20 C 0.468 3.532 21 O -0.500 6.500 22 O -0.516 6.516 23 C 0.102 3.898 24 C -0.157 4.157 25 C -0.205 4.205 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.407 0.593 38 H 0.142 0.858 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 -7.323 7.716 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.833 5.833 4 C 0.123 3.877 5 C -0.565 4.565 6 H 0.084 0.916 7 C -0.136 4.136 8 N -0.530 5.530 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.190 1.190 13 S 2.806 3.194 14 O -0.975 6.975 15 O -0.961 6.961 16 N -0.789 5.789 17 C 0.059 3.941 18 H 0.146 0.854 19 C -0.247 4.247 20 C 0.307 3.693 21 O -0.386 6.386 22 O -0.327 6.327 23 C -0.004 4.004 24 C -0.196 4.196 25 C -0.244 4.244 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.266 0.734 38 H 0.160 0.840 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.810 -6.681 8.126 12.532 hybrid contribution 0.988 -0.103 -0.548 1.134 sum 7.798 -6.785 7.578 12.816 Atomic orbital electron populations 1.22119 0.96653 1.01230 1.02435 1.21137 0.94176 0.83025 1.02259 1.57777 1.72066 1.21546 1.31954 1.19174 0.98186 0.89588 0.80745 1.21497 1.08394 1.24162 1.02461 0.91644 1.24891 0.96002 0.95004 0.97750 1.69935 1.33429 1.26409 1.23259 0.86770 0.83183 0.77685 0.81226 1.21032 1.21381 1.19048 1.01602 0.71972 0.73232 0.72622 1.93486 1.85384 1.62973 1.55707 1.93547 1.79616 1.36661 1.86277 1.57543 1.25347 1.29544 1.66464 1.20078 0.98931 0.89417 0.85710 0.85404 1.22598 1.04071 0.93924 1.04121 1.24054 0.75038 0.78056 0.92164 1.90708 1.41548 1.35936 1.70424 1.84485 1.67194 1.54609 1.26452 1.21376 0.92138 0.90377 0.96544 1.23291 1.02013 1.02387 0.91954 1.23441 0.95355 1.02647 1.02956 0.93220 0.91649 0.92340 0.90791 0.90612 0.94257 0.93926 0.92714 0.89584 0.89257 0.89607 0.73418 0.84016 0.87946 0.88475 0.89291 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.05 37.16 0.37 -2.22 16 2 C 0.12 2.04 6.21 -4.04 -0.03 2.01 16 3 N -0.99 -20.01 2.89 -115.66 -0.33 -20.35 16 4 C 0.25 5.77 5.35 -5.19 -0.03 5.74 16 5 C -0.53 -12.44 8.00 -34.44 -0.28 -12.71 16 6 H 0.07 1.47 7.22 -52.49 -0.38 1.09 16 7 C 0.07 1.65 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -24.20 13.29 55.43 0.74 -23.47 16 9 Si 0.88 19.19 29.17 -169.99 -4.96 14.24 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 13 S 2.80 58.52 4.82 -107.50 -0.52 58.00 16 14 O -0.99 -20.77 12.00 -65.30 -0.78 -21.55 16 15 O -0.98 -24.01 16.05 -57.17 -0.92 -24.93 16 16 N -0.96 -17.06 2.75 -101.51 -0.28 -17.33 16 17 C 0.17 2.45 2.73 -69.08 -0.19 2.27 16 18 H 0.13 1.53 5.57 -51.93 -0.29 1.24 16 19 C -0.19 -2.47 8.80 37.16 0.33 -2.14 16 20 C 0.47 7.17 6.82 36.00 0.25 7.42 16 21 O -0.50 -9.60 15.49 -25.29 -0.39 -9.99 16 22 O -0.52 -5.79 13.30 -39.25 -0.52 -6.31 16 23 C 0.10 1.79 6.14 -67.93 -0.42 1.37 16 24 C -0.16 -2.53 8.51 -26.73 -0.23 -2.76 16 25 C -0.21 -2.83 9.75 -26.73 -0.26 -3.10 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.09 7.14 -51.93 -0.37 0.72 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.18 5.27 -51.93 -0.27 0.91 16 31 H 0.04 0.98 7.03 -51.93 -0.37 0.61 16 32 H 0.04 1.12 7.20 -51.93 -0.37 0.75 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.09 1.27 4.04 -51.93 -0.21 1.06 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 37 H 0.41 2.91 9.10 45.56 0.41 3.32 16 38 H 0.14 2.74 7.45 -51.93 -0.39 2.35 16 39 H 0.10 1.75 7.77 -51.93 -0.40 1.35 16 40 H 0.10 1.53 8.00 -51.93 -0.42 1.11 16 41 H 0.09 1.08 6.27 -51.93 -0.33 0.75 16 42 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 348.07 15.07 5.25 5.25 Total: -1.00 -32.28 348.07 -8.34 -40.62 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.05 Total: 8.39 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.57 Total: -2.56 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.12 Total: -61.15 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -2.62 Total: -62.78 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.96 Total: 14.24 kcal Atomic # 16 Polarization: 58.52 SS G_CDS: -0.52 Total: 58.00 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.28 -8.34 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589729886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.541 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds