Wall clock time and date at job start Tue Mar 31 2020 13:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46952 * 2 1 4 4 C 1.46498 * 119.99758 * 289.36570 * 3 2 1 5 5 C 1.50700 * 109.47195 * 275.00072 * 4 3 2 6 6 H 1.08000 * 120.00000 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00073 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99918 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99822 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47261 * 89.99729 * 9 7 5 11 11 H 1.48497 * 109.47190 * 209.99365 * 9 7 5 12 12 H 1.48497 * 109.47536 * 329.99812 * 9 7 5 13 13 S 1.65596 * 120.00280 * 109.36383 * 3 2 1 14 14 O 1.42106 * 106.39981 * 351.31735 * 13 3 2 15 15 O 1.42104 * 106.40317 * 218.39685 * 13 3 2 16 16 N 1.65595 * 107.21873 * 104.85725 * 13 3 2 17 17 C 1.46502 * 120.00086 * 262.07300 * 16 13 3 18 18 H 1.09000 * 109.47408 * 172.08170 * 17 16 13 19 19 C 1.52999 * 109.46994 * 52.08623 * 17 16 13 20 20 C 1.50696 * 109.47498 * 292.08820 * 17 16 13 21 21 O 1.20827 * 119.99547 * 358.66566 * 20 17 16 22 22 O 1.34226 * 120.00475 * 178.66862 * 20 17 16 23 23 C 1.46504 * 120.00201 * 82.07315 * 16 13 3 24 24 C 1.53000 * 117.49607 * 233.04036 * 23 16 13 25 25 C 1.52999 * 60.00024 * 252.50722 * 24 23 16 26 26 H 1.08999 * 109.47819 * 300.00165 * 1 2 3 27 27 H 1.09006 * 109.47354 * 60.00561 * 1 2 3 28 28 H 1.09003 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47154 * 239.99810 * 2 1 3 30 30 H 1.09000 * 109.47022 * 119.99724 * 2 1 3 31 31 H 1.09002 * 109.47106 * 34.99981 * 4 3 2 32 32 H 1.09003 * 109.47233 * 155.00077 * 4 3 2 33 33 H 0.96997 * 119.99525 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47441 * 298.90189 * 19 17 16 35 35 H 1.08997 * 109.47472 * 58.90467 * 19 17 16 36 36 H 1.08999 * 109.47452 * 178.90294 * 19 17 16 37 37 H 0.96703 * 117.00116 * 179.97438 * 22 20 17 38 38 H 1.08993 * 115.55830 * 18.72823 * 23 16 13 39 39 H 1.09004 * 117.49522 * 145.01996 * 24 23 16 40 40 H 1.08994 * 117.50114 * 359.97438 * 24 23 16 41 41 H 1.09002 * 117.49861 * 107.48943 * 25 24 23 42 42 H 1.08999 * 117.50318 * 252.51810 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.8658 2.2121 -1.1970 5 6 3.0173 1.9576 -2.1352 6 1 3.7861 1.2483 -1.8665 7 6 3.0899 2.6311 -3.3361 8 7 2.1540 3.4952 -3.6630 9 14 4.5177 2.3161 -4.4986 10 1 4.1672 1.2093 -5.4247 11 1 4.7991 3.5461 -5.2816 12 1 5.7218 1.9425 -3.7140 13 16 2.7426 2.0035 1.3529 14 8 2.5567 1.0442 2.3847 15 8 2.3064 3.3519 1.4575 16 7 4.3705 2.0605 1.0552 17 6 5.2434 0.9925 1.5490 18 1 6.2457 1.1248 1.1416 19 6 4.6889 -0.3638 1.1088 20 6 5.3016 1.0468 3.0539 21 8 4.6973 1.9058 3.6512 22 8 6.0248 0.1410 3.7308 23 6 4.9380 3.1789 0.2979 24 6 5.8059 2.8417 -0.9162 25 6 6.4536 3.3785 0.3617 26 1 -0.3635 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.9290 1.9626 -1.6954 32 1 1.8561 3.2637 -0.9105 33 1 2.2049 3.9687 -4.5080 34 1 3.6944 -0.5046 1.5322 35 1 4.6285 -0.3959 0.0210 36 1 5.3487 -1.1573 1.4596 37 1 6.0321 0.2166 4.6948 38 1 4.3149 4.0712 0.2390 39 1 5.7537 3.5124 -1.7740 40 1 5.9549 1.7879 -1.1513 41 1 7.0285 2.6778 0.9672 42 1 6.8274 4.4023 0.3449 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589729886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:02 Heat of formation + Delta-G solvation = -149.495788 kcal Electronic energy + Delta-G solvation = -28269.187380 eV Core-core repulsion = 24376.825409 eV Total energy + Delta-G solvation = -3892.361971 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50810 -39.14229 -38.48291 -37.69190 -37.10197 -36.86177 -35.15128 -34.56239 -31.51675 -30.97180 -28.50888 -26.22955 -24.96656 -23.37669 -23.27478 -22.89790 -22.17066 -19.73499 -19.33399 -18.88727 -18.50135 -18.21286 -17.78596 -17.05128 -16.73145 -16.48220 -16.09774 -15.95065 -15.28571 -14.87675 -14.63925 -14.56588 -14.17013 -13.98302 -13.71802 -13.59059 -13.41505 -13.28516 -13.14707 -13.09555 -12.95493 -12.68217 -12.57311 -12.54763 -12.42788 -12.37571 -12.25083 -12.05527 -11.98470 -11.69210 -11.57562 -11.36123 -11.17923 -10.46472 -9.82956 -9.69222 -8.04232 -6.14795 -0.40330 1.17231 1.50403 1.53269 1.61891 1.72627 2.04054 2.51966 2.60953 3.02681 3.29168 3.33196 3.57316 3.87468 3.93969 4.03634 4.09588 4.15203 4.21362 4.37022 4.44788 4.48467 4.67889 4.71710 4.81283 4.89260 4.98530 5.13497 5.16853 5.22040 5.28130 5.31505 5.36530 5.43075 5.52626 5.60097 5.63242 5.87411 6.01838 6.22362 6.95879 6.96214 7.54103 9.04922 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.007193 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.559337 B = 3891.764459 C = 4861.968330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.993 5.993 4 C 0.261 3.739 5 C -0.511 4.511 6 H 0.084 0.916 7 C 0.016 3.984 8 N -0.937 5.937 9 Si 0.942 3.058 10 H -0.287 1.287 11 H -0.299 1.299 12 H -0.233 1.233 13 S 2.802 3.198 14 O -0.994 6.994 15 O -1.027 7.027 16 N -0.953 5.953 17 C 0.157 3.843 18 H 0.163 0.837 19 C -0.188 4.188 20 C 0.471 3.529 21 O -0.548 6.548 22 O -0.498 6.498 23 C 0.066 3.934 24 C -0.158 4.158 25 C -0.167 4.167 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.019 0.981 32 H 0.004 0.996 33 H 0.260 0.740 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.427 0.573 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.592 -9.960 7.937 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.834 5.834 4 C 0.137 3.863 5 C -0.550 4.550 6 H 0.102 0.898 7 C -0.182 4.182 8 N -0.578 5.578 9 Si 0.768 3.232 10 H -0.213 1.213 11 H -0.226 1.226 12 H -0.156 1.156 13 S 2.812 3.188 14 O -0.979 6.979 15 O -1.011 7.011 16 N -0.788 5.788 17 C 0.049 3.951 18 H 0.180 0.820 19 C -0.246 4.246 20 C 0.313 3.687 21 O -0.438 6.438 22 O -0.310 6.310 23 C -0.041 4.041 24 C -0.198 4.198 25 C -0.206 4.206 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.037 0.963 32 H 0.022 0.978 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.289 0.711 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.134 0.866 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.918 -9.377 8.393 16.023 hybrid contribution 0.039 0.664 -0.508 0.837 sum 9.957 -8.713 7.885 15.403 Atomic orbital electron populations 1.22135 0.96007 1.03164 1.01135 1.21431 0.94873 0.81303 1.03631 1.57647 1.72865 1.22527 1.30379 1.18747 0.97658 0.88154 0.81723 1.21706 1.08120 1.23416 1.01744 0.89809 1.25670 0.98263 0.94767 0.99537 1.70095 1.35839 1.28123 1.23752 0.85823 0.81439 0.76762 0.79179 1.21324 1.22579 1.15588 1.01142 0.72847 0.72126 0.72643 1.93469 1.85948 1.62585 1.55851 1.93480 1.81134 1.39449 1.86992 1.57181 1.24408 1.30600 1.66628 1.20535 0.99970 0.89024 0.85573 0.82005 1.22637 1.03727 0.93838 1.04390 1.24185 0.74338 0.77607 0.92605 1.90712 1.43710 1.38015 1.71363 1.84427 1.65650 1.52772 1.28177 1.21330 0.94094 0.89785 0.98863 1.23279 1.01808 1.02854 0.91815 1.23554 0.92206 1.04116 1.00732 0.94098 0.93384 0.88777 0.89633 0.88824 0.96251 0.97813 0.93123 0.91470 0.88757 0.86239 0.71106 0.87432 0.89301 0.87309 0.86587 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 10.05 71.98 0.72 -4.40 16 2 C 0.11 3.71 6.21 86.38 0.54 4.24 16 3 N -0.99 -40.59 2.89 -519.85 -1.50 -42.10 16 4 C 0.26 12.75 5.35 85.63 0.46 13.21 16 5 C -0.51 -24.11 8.00 25.60 0.20 -23.91 16 6 H 0.08 3.59 7.22 -2.91 -0.02 3.56 16 7 C 0.02 0.80 5.46 84.65 0.46 1.26 16 8 N -0.94 -52.53 13.29 21.45 0.28 -52.24 16 9 Si 0.94 38.60 29.17 68.60 2.00 40.60 16 10 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.30 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.23 -8.24 7.11 99.48 0.71 -7.53 16 13 S 2.80 119.27 4.82 -56.49 -0.27 119.00 16 14 O -0.99 -41.49 12.00 -120.23 -1.44 -42.93 16 15 O -1.03 -53.36 16.05 -128.00 -2.05 -55.42 16 16 N -0.95 -33.03 2.75 -475.07 -1.31 -34.34 16 17 C 0.16 4.09 2.73 44.24 0.12 4.21 16 18 H 0.16 3.07 5.57 -2.39 -0.01 3.05 16 19 C -0.19 -4.21 8.80 71.98 0.63 -3.58 16 20 C 0.47 13.21 6.82 71.23 0.49 13.69 16 21 O -0.55 -20.51 15.49 28.21 0.44 -20.07 16 22 O -0.50 -9.25 13.30 -51.38 -0.68 -9.93 16 23 C 0.07 2.26 6.14 44.99 0.28 2.54 16 24 C -0.16 -4.70 8.51 30.59 0.26 -4.44 16 25 C -0.17 -4.10 9.75 30.59 0.30 -3.80 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.64 7.14 -2.38 -0.02 1.62 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.09 2.76 5.27 -2.39 -0.01 2.75 16 31 H 0.02 1.02 7.03 -2.39 -0.02 1.00 16 32 H 0.00 0.22 7.20 -2.39 -0.02 0.20 16 33 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 34 H 0.07 1.79 4.04 -2.39 -0.01 1.78 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.12 1.86 8.11 -2.39 -0.02 1.84 16 37 H 0.43 4.60 9.10 -74.06 -0.67 3.92 16 38 H 0.11 4.41 7.45 -2.39 -0.02 4.39 16 39 H 0.09 2.89 7.77 -2.39 -0.02 2.87 16 40 H 0.11 2.96 8.00 -2.39 -0.02 2.94 16 41 H 0.12 2.22 6.27 -2.39 -0.01 2.21 16 42 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -73.51 348.07 0.30 -73.21 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.38 Total: 25.19 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 4.46 Total: -0.97 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -2.52 Total: -128.67 kcal Atomic # 8 Polarization: -124.61 SS G_CDS: -3.74 Total: -128.36 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.00 Total: 40.60 kcal Atomic # 16 Polarization: 119.27 SS G_CDS: -0.27 Total: 119.00 kcal Total: -73.51 0.30 -73.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589729886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.288 kcal (2) G-P(sol) polarization free energy of solvation -73.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds