Wall clock time and date at job start Tue Mar 31 2020 12:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47420 * 2 1 4 4 N 1.31883 * 119.92516 * 269.72689 * 3 2 1 5 5 N 1.28287 * 122.58289 * 180.27594 * 4 3 2 6 6 C 1.32495 * 122.18032 * 359.97438 * 5 4 3 7 7 S 1.76196 * 120.25276 * 179.97438 * 6 5 4 8 8 C 1.81400 * 103.00080 * 0.02562 * 7 6 5 9 9 C 1.50701 * 109.47039 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00220 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99658 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00186 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99751 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46755 * 90.00500 * 13 11 9 15 15 H 1.48504 * 109.46874 * 210.00398 * 13 11 9 16 16 H 1.48500 * 109.47146 * 330.00119 * 13 11 9 17 17 C 1.40552 * 119.49569 * 359.97438 * 6 5 4 18 18 C 1.48348 * 121.16282 * 179.97438 * 17 6 5 19 19 N 1.34077 * 126.68256 * 180.02562 * 18 17 6 20 20 N 1.28982 * 107.27022 * 179.97438 * 19 18 17 21 21 N 1.28728 * 108.95324 * 359.97438 * 20 19 18 22 22 H 0.96999 * 125.33784 * 179.97438 * 21 20 19 23 23 N 1.28882 * 109.32717 * 359.72903 * 21 20 19 24 24 C 1.38555 * 119.92745 * 89.99459 * 3 2 1 25 25 C 1.50697 * 121.03775 * 359.74901 * 24 3 2 26 26 C 1.52994 * 109.47314 * 90.00180 * 25 24 3 27 27 H 1.09001 * 109.46911 * 60.00764 * 1 2 3 28 28 H 1.09005 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47551 * 299.99945 * 1 2 3 30 30 H 1.08998 * 109.47410 * 239.99521 * 2 1 3 31 31 H 1.09007 * 109.47076 * 120.00122 * 2 1 3 32 32 H 1.09001 * 109.46845 * 299.99811 * 8 7 6 33 33 H 1.08995 * 109.47585 * 59.99761 * 8 7 6 34 34 H 0.97001 * 119.99933 * 179.97438 * 12 11 9 35 35 H 1.09008 * 109.46907 * 210.00043 * 25 24 3 36 36 H 1.09002 * 109.47267 * 329.99861 * 25 24 3 37 37 H 1.09003 * 109.47444 * 179.97438 * 26 25 24 38 38 H 1.09008 * 109.47022 * 299.99793 * 26 25 24 39 39 H 1.08995 * 109.47509 * 59.99887 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2569 2.0392 -1.1430 5 7 2.6893 3.2456 -1.2025 6 6 2.9417 3.9591 -0.1150 7 16 3.5351 5.6122 -0.2558 8 6 3.6292 5.8605 -2.0502 9 6 4.1287 7.2526 -2.3392 10 1 4.3655 7.9212 -1.5248 11 6 4.2835 7.6726 -3.6433 12 7 3.9947 6.8586 -4.6350 13 14 4.9020 9.3985 -4.0015 14 1 6.3842 9.3842 -4.0920 15 1 4.3320 9.8714 -5.2887 16 1 4.4814 10.3118 -2.9087 17 6 2.7325 3.3874 1.1519 18 6 3.0034 4.1525 2.3936 19 7 2.8444 3.7189 3.6523 20 7 3.1889 4.6836 4.4360 21 7 3.5534 5.6916 3.7231 22 1 3.8585 6.5440 4.0713 23 7 3.4544 5.3889 2.4743 24 6 2.2627 2.0725 1.2008 25 6 2.0134 1.3849 2.5184 26 6 3.2872 0.6662 2.9676 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 4.3143 5.1312 -2.4825 33 1 2.6389 5.7322 -2.4873 34 1 4.1032 7.1542 -5.5525 35 1 1.7308 2.1253 3.2668 36 1 1.2083 0.6593 2.4030 37 1 3.1070 0.1692 3.9209 38 1 3.5698 -0.0742 2.2191 39 1 4.0923 1.3917 3.0831 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590933040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:12 Heat of formation + Delta-G solvation = 163.860585 kcal Electronic energy + Delta-G solvation = -24273.852140 eV Core-core repulsion = 20766.972743 eV Total energy + Delta-G solvation = -3506.879397 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.46371 -40.88687 -36.09812 -35.02013 -34.02666 -33.17394 -32.67075 -31.01494 -30.17066 -28.54016 -25.86481 -25.51291 -24.32564 -23.38973 -23.05310 -21.77981 -21.31433 -19.23384 -17.74278 -17.24676 -17.13078 -16.22473 -16.07363 -15.12093 -14.86782 -14.65839 -14.51127 -13.96058 -13.76713 -13.40181 -13.19148 -12.77249 -12.62297 -12.41153 -12.37423 -12.21553 -11.93197 -11.61683 -11.56470 -11.38536 -11.26710 -11.16746 -11.12629 -10.92705 -10.81817 -10.49519 -10.03939 -9.83236 -9.65110 -9.54632 -9.32378 -8.95144 -8.61917 -6.94054 -6.19053 -4.26710 0.45936 1.02804 1.15503 2.08835 2.21343 2.30657 3.24255 3.30165 3.32427 3.46195 3.58507 3.68062 4.00462 4.32637 4.40460 4.53917 4.72625 4.76364 5.08064 5.16475 5.17145 5.18965 5.23990 5.30474 5.40227 5.42837 5.57623 5.71510 5.74942 5.79915 5.90479 6.08970 6.10663 6.13201 6.25761 6.38235 6.40534 7.13473 7.24272 7.69437 7.95684 8.12469 8.74336 8.96285 9.36511 10.91499 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.013514 B = 0.004288 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.419311 B = 6528.803454 C = 8367.901823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C 0.040 3.960 4 N -0.210 5.210 5 N -0.240 5.240 6 C 0.084 3.916 7 S -0.021 6.021 8 C 0.056 3.944 9 C -0.523 4.523 10 H 0.066 0.934 11 C 0.071 3.929 12 N -0.882 5.882 13 Si 0.905 3.095 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.271 1.271 17 C -0.024 4.024 18 C 0.217 3.783 19 N -0.263 5.263 20 N -0.059 5.059 21 N -0.226 5.226 22 H 0.476 0.524 23 N -0.248 5.248 24 C -0.018 4.018 25 C -0.096 4.096 26 C -0.136 4.136 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.267 0.733 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.801 -10.368 17.263 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.110 4.110 4 N -0.054 5.054 5 N -0.087 5.087 6 C -0.172 4.172 7 S 0.223 5.777 8 C -0.092 4.092 9 C -0.563 4.563 10 H 0.084 0.916 11 C -0.135 4.135 12 N -0.519 5.519 13 Si 0.732 3.268 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.196 1.196 17 C -0.046 4.046 18 C -0.062 4.062 19 N -0.137 5.137 20 N -0.053 5.053 21 N -0.073 5.073 22 H 0.330 0.670 23 N -0.100 5.100 24 C -0.033 4.033 25 C -0.134 4.134 26 C -0.193 4.193 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.453 -9.415 16.840 19.600 hybrid contribution 0.253 0.664 -0.146 0.726 sum -3.200 -8.751 16.695 19.119 Atomic orbital electron populations 1.21750 0.94162 1.02060 1.02546 1.20384 0.96477 0.89651 1.03872 1.22484 1.00560 0.98853 0.89117 1.72640 1.05289 1.02700 1.24743 1.73842 1.11254 1.00025 1.23609 1.25537 0.97001 1.03310 0.91324 1.85950 1.73997 1.00072 1.17728 1.21501 1.02105 1.01053 0.84530 1.20586 1.46518 0.96678 0.92553 0.91568 1.24942 0.94931 0.98014 0.95596 1.69982 1.46759 1.35777 0.99363 0.86382 0.79046 0.83442 0.77935 1.20309 1.20873 1.19587 1.17668 1.05710 0.93268 0.87924 1.23078 1.01347 0.89028 0.92792 1.76024 1.18381 1.19969 0.99300 1.78839 1.12172 0.92140 1.22183 1.47903 1.41837 1.15681 1.01858 0.66978 1.75398 1.18751 1.15707 1.00109 1.20888 0.93054 0.91715 0.97610 1.20892 0.99310 1.00555 0.92693 1.21598 0.96825 0.99904 1.00987 0.92024 0.91820 0.92596 0.89581 0.89823 0.93065 0.93063 0.92352 0.87480 0.89983 0.91687 0.92807 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.78 37.16 0.36 -1.02 16 2 C -0.06 -0.69 5.56 -27.89 -0.16 -0.84 16 3 C 0.04 0.59 6.11 -82.45 -0.50 0.09 16 4 N -0.21 -4.00 11.40 33.58 0.38 -3.62 16 5 N -0.24 -5.21 10.61 31.69 0.34 -4.88 16 6 C 0.08 1.70 7.12 -16.39 -0.12 1.59 16 7 S -0.02 -0.46 19.12 -107.50 -2.06 -2.52 16 8 C 0.06 1.47 4.99 36.01 0.18 1.65 16 9 C -0.52 -14.49 9.13 -34.44 -0.31 -14.80 16 10 H 0.07 1.78 7.71 -52.49 -0.40 1.37 16 11 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 12 N -0.88 -25.85 13.29 55.43 0.74 -25.12 16 13 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 17 C -0.02 -0.42 5.94 -104.31 -0.62 -1.04 16 18 C 0.22 3.39 7.75 -156.29 -1.21 2.18 16 19 N -0.26 -3.58 9.05 32.14 0.29 -3.28 16 20 N -0.06 -0.70 13.47 60.35 0.81 0.11 16 21 N -0.23 -2.43 7.90 60.35 0.48 -1.95 16 22 H 0.48 2.83 8.96 -340.36 -3.05 -0.22 16 23 N -0.25 -3.70 9.77 32.16 0.31 -3.38 16 24 C -0.02 -0.26 5.21 -103.96 -0.54 -0.80 16 25 C -0.10 -1.05 4.73 -27.89 -0.13 -1.18 16 26 C -0.14 -1.33 9.64 37.15 0.36 -0.97 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.50 7.45 -51.93 -0.39 0.11 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.69 6.00 -51.93 -0.31 0.38 16 32 H 0.05 1.45 8.14 -51.92 -0.42 1.03 16 33 H 0.05 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 35 H 0.11 1.25 5.41 -51.92 -0.28 0.97 16 36 H 0.08 0.71 6.03 -51.93 -0.31 0.40 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.49 7.44 -51.92 -0.39 0.10 16 39 H 0.05 0.63 7.95 -51.93 -0.41 0.22 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -32.73 340.99 -8.60 -41.33 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -7.22 Total: -4.54 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -2.79 Total: -13.28 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 3.35 Total: -42.12 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -2.06 Total: -2.52 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.73 -8.60 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590933040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.187 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds