Wall clock time and date at job start Tue Mar 31 2020 12:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47420 * 2 1 4 4 N 1.31883 * 119.92516 * 269.72689 * 3 2 1 5 5 N 1.28287 * 122.58289 * 180.27594 * 4 3 2 6 6 C 1.32495 * 122.18032 * 359.97438 * 5 4 3 7 7 S 1.76196 * 120.25276 * 179.97438 * 6 5 4 8 8 C 1.81400 * 103.00080 * 0.02562 * 7 6 5 9 9 C 1.50701 * 109.47039 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00220 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99658 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00186 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99751 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46755 * 90.00500 * 13 11 9 15 15 H 1.48504 * 109.46874 * 210.00398 * 13 11 9 16 16 H 1.48500 * 109.47146 * 330.00119 * 13 11 9 17 17 C 1.40552 * 119.49569 * 359.97438 * 6 5 4 18 18 C 1.48348 * 121.16282 * 179.97438 * 17 6 5 19 19 N 1.34077 * 126.68256 * 180.02562 * 18 17 6 20 20 N 1.28982 * 107.27022 * 179.97438 * 19 18 17 21 21 N 1.28728 * 108.95324 * 359.97438 * 20 19 18 22 22 H 0.96999 * 125.33784 * 179.97438 * 21 20 19 23 23 N 1.28882 * 109.32717 * 359.72903 * 21 20 19 24 24 C 1.38555 * 119.92745 * 89.99459 * 3 2 1 25 25 C 1.50697 * 121.03775 * 359.74901 * 24 3 2 26 26 C 1.52994 * 109.47314 * 90.00180 * 25 24 3 27 27 H 1.09001 * 109.46911 * 60.00764 * 1 2 3 28 28 H 1.09005 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47551 * 299.99945 * 1 2 3 30 30 H 1.08998 * 109.47410 * 239.99521 * 2 1 3 31 31 H 1.09007 * 109.47076 * 120.00122 * 2 1 3 32 32 H 1.09001 * 109.46845 * 299.99811 * 8 7 6 33 33 H 1.08995 * 109.47585 * 59.99761 * 8 7 6 34 34 H 0.97001 * 119.99933 * 179.97438 * 12 11 9 35 35 H 1.09008 * 109.46907 * 210.00043 * 25 24 3 36 36 H 1.09002 * 109.47267 * 329.99861 * 25 24 3 37 37 H 1.09003 * 109.47444 * 179.97438 * 26 25 24 38 38 H 1.09008 * 109.47022 * 299.99793 * 26 25 24 39 39 H 1.08995 * 109.47509 * 59.99887 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2569 2.0392 -1.1430 5 7 2.6893 3.2456 -1.2025 6 6 2.9417 3.9591 -0.1150 7 16 3.5351 5.6122 -0.2558 8 6 3.6292 5.8605 -2.0502 9 6 4.1287 7.2526 -2.3392 10 1 4.3655 7.9212 -1.5248 11 6 4.2835 7.6726 -3.6433 12 7 3.9947 6.8586 -4.6350 13 14 4.9020 9.3985 -4.0015 14 1 6.3842 9.3842 -4.0920 15 1 4.3320 9.8714 -5.2887 16 1 4.4814 10.3118 -2.9087 17 6 2.7325 3.3874 1.1519 18 6 3.0034 4.1525 2.3936 19 7 2.8444 3.7189 3.6523 20 7 3.1889 4.6836 4.4360 21 7 3.5534 5.6916 3.7231 22 1 3.8585 6.5440 4.0713 23 7 3.4544 5.3889 2.4743 24 6 2.2627 2.0725 1.2008 25 6 2.0134 1.3849 2.5184 26 6 3.2872 0.6662 2.9676 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 4.3143 5.1312 -2.4825 33 1 2.6389 5.7322 -2.4873 34 1 4.1032 7.1542 -5.5525 35 1 1.7308 2.1253 3.2668 36 1 1.2083 0.6593 2.4030 37 1 3.1070 0.1692 3.9209 38 1 3.5698 -0.0742 2.2191 39 1 4.0923 1.3917 3.0831 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590933040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:12 Heat of formation + Delta-G solvation = 141.872660 kcal Electronic energy + Delta-G solvation = -24274.805608 eV Core-core repulsion = 20766.972743 eV Total energy + Delta-G solvation = -3507.832865 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.111 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.54445 -42.23570 -37.26592 -36.15533 -35.32598 -35.10458 -33.67067 -32.18144 -31.35057 -30.62530 -27.08166 -26.62708 -25.50700 -25.03884 -24.38092 -22.89367 -22.43302 -20.28613 -19.14921 -18.89042 -18.23532 -18.02895 -17.30014 -16.68461 -16.41340 -15.72958 -15.69127 -15.23016 -14.78652 -14.74762 -14.47585 -14.34948 -14.29890 -13.66569 -13.58653 -13.44492 -13.13603 -12.75393 -12.65198 -12.63386 -12.55646 -12.42753 -12.41600 -12.27567 -11.96672 -11.90977 -11.64356 -11.32587 -11.22025 -11.07785 -10.73016 -10.65714 -10.51196 -8.64166 -8.31997 -6.49242 -0.82837 -0.32350 0.11275 0.49718 1.08636 1.17826 1.40052 1.42557 1.53941 1.74582 2.31405 2.36306 2.39863 2.80989 3.02040 3.13283 3.41825 3.52532 3.67146 3.90270 4.18914 4.21609 4.36374 4.41446 4.46606 4.51139 4.53398 4.67438 4.90874 4.92142 5.03912 5.04578 5.09207 5.13180 5.21900 5.33316 5.37749 5.52794 5.54135 5.58639 5.82360 6.59848 7.04321 7.19762 7.55333 8.80412 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.013514 B = 0.004288 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.419311 B = 6528.803454 C = 8367.901823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 C 0.055 3.945 4 N -0.247 5.247 5 N -0.287 5.287 6 C 0.061 3.939 7 S -0.001 6.001 8 C 0.061 3.939 9 C -0.542 4.542 10 H 0.073 0.927 11 C 0.015 3.985 12 N -0.924 5.924 13 Si 0.981 3.019 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.258 1.258 17 C -0.028 4.028 18 C 0.202 3.798 19 N -0.257 5.257 20 N -0.046 5.046 21 N -0.198 5.198 22 H 0.495 0.505 23 N -0.272 5.272 24 C -0.007 4.007 25 C -0.092 4.092 26 C -0.133 4.133 27 H 0.037 0.963 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.270 0.730 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -11.360 20.385 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.096 4.096 4 N -0.089 5.089 5 N -0.133 5.133 6 C -0.196 4.196 7 S 0.241 5.759 8 C -0.088 4.088 9 C -0.581 4.581 10 H 0.091 0.909 11 C -0.187 4.187 12 N -0.562 5.562 13 Si 0.803 3.197 14 H -0.193 1.193 15 H -0.203 1.203 16 H -0.182 1.182 17 C -0.048 4.048 18 C -0.077 4.077 19 N -0.131 5.131 20 N -0.041 5.041 21 N -0.049 5.049 22 H 0.354 0.646 23 N -0.125 5.125 24 C -0.022 4.022 25 C -0.130 4.130 26 C -0.191 4.191 27 H 0.056 0.944 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.137 0.863 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.794 -10.422 19.977 22.849 hybrid contribution 0.279 0.749 -0.891 1.196 sum -3.516 -9.673 19.086 21.684 Atomic orbital electron populations 1.21758 0.92800 1.03874 1.01834 1.20658 0.97434 0.86579 1.05729 1.23331 0.97561 1.00440 0.88217 1.72575 1.07165 1.02108 1.27036 1.73717 1.12889 1.01583 1.25064 1.25431 0.98801 1.02655 0.92700 1.85472 1.76104 1.02213 1.12158 1.21042 0.98911 0.99999 0.88816 1.20968 1.46594 0.97260 0.93253 0.90868 1.26013 0.94716 1.02713 0.95243 1.70131 1.47888 1.38228 0.99919 0.85218 0.78690 0.77697 0.78070 1.19283 1.20298 1.18209 1.17856 1.05145 0.94442 0.87336 1.22878 1.02580 0.89326 0.92949 1.76032 1.18438 1.20318 0.98292 1.78793 1.11576 0.92047 1.21642 1.47877 1.40259 1.16241 1.00522 0.64578 1.75240 1.19271 1.15917 1.02060 1.21431 0.90843 0.90606 0.99319 1.21059 1.00968 1.00964 0.90013 1.21619 0.95281 0.99528 1.02664 0.94363 0.88743 0.91764 0.89425 0.86280 0.96691 0.96691 0.92084 0.87762 0.86705 0.89038 0.91868 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.78 71.98 0.70 -1.58 16 2 C -0.07 -1.19 5.56 29.85 0.17 -1.03 16 3 C 0.06 1.61 6.11 42.63 0.26 1.87 16 4 N -0.25 -9.80 11.40 -47.68 -0.54 -10.35 16 5 N -0.29 -13.34 10.61 -53.66 -0.57 -13.91 16 6 C 0.06 2.62 7.12 85.16 0.61 3.23 16 7 S 0.00 -0.07 19.12 -56.49 -1.08 -1.15 16 8 C 0.06 3.46 4.99 71.24 0.36 3.81 16 9 C -0.54 -31.31 9.13 25.60 0.23 -31.08 16 10 H 0.07 4.02 7.71 -2.91 -0.02 4.00 16 11 C 0.01 0.83 5.46 84.66 0.46 1.29 16 12 N -0.92 -56.70 13.29 21.45 0.28 -56.41 16 13 Si 0.98 43.75 29.54 68.60 2.03 45.78 16 14 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 17 C -0.03 -0.94 5.94 -19.66 -0.12 -1.06 16 18 C 0.20 6.14 7.75 137.32 1.06 7.20 16 19 N -0.26 -6.46 9.05 -52.23 -0.47 -6.93 16 20 N -0.05 -0.99 13.47 37.02 0.50 -0.49 16 21 N -0.20 -3.88 7.90 37.02 0.29 -3.59 16 22 H 0.49 4.82 8.96 -347.53 -3.12 1.70 16 23 N -0.27 -7.92 9.77 -52.18 -0.51 -8.43 16 24 C -0.01 -0.19 5.21 -19.43 -0.10 -0.29 16 25 C -0.09 -1.67 4.73 29.85 0.14 -1.53 16 26 C -0.13 -2.12 9.64 71.98 0.69 -1.42 16 27 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.06 0.91 7.45 -2.39 -0.02 0.90 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.12 1.39 6.00 -2.38 -0.01 1.37 16 32 H 0.01 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.01 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.10 2.07 5.41 -2.38 -0.01 2.06 16 36 H 0.11 1.39 6.03 -2.39 -0.01 1.37 16 37 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 0.89 7.44 -2.38 -0.02 0.87 16 39 H 0.03 0.70 7.95 -2.39 -0.02 0.68 16 Total: -1.00 -77.02 340.99 2.40 -74.63 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -2.00 Total: 1.43 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 4.47 Total: -20.59 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -1.02 Total: -100.11 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.08 Total: -1.15 kcal Total: -77.02 2.40 -74.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590933040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.500 kcal (2) G-P(sol) polarization free energy of solvation -77.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds