Wall clock time and date at job start Tue Mar 31 2020 13:30:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.46508 * 119.99805 * 2 1
4 4 C 1.50707 * 109.47048 * 279.82137 * 3 2 1
5 5 H 1.07999 * 119.99644 * 0.02562 * 4 3 2
6 6 C 1.37870 * 119.99847 * 179.97438 * 4 3 2
7 7 N 1.31506 * 120.00352 * 359.97438 * 6 4 3
8 8 Si 1.86803 * 119.99770 * 179.97438 * 6 4 3
9 9 H 1.48507 * 109.47206 * 0.02562 * 8 6 4
10 10 H 1.48496 * 109.46996 * 120.00060 * 8 6 4
11 11 H 1.48501 * 109.47392 * 240.00056 * 8 6 4
12 12 S 1.65600 * 120.00563 * 179.97438 * 2 1 3
13 13 O 1.42094 * 106.40477 * 161.40885 * 12 2 1
14 14 O 1.42098 * 106.39835 * 28.48863 * 12 2 1
15 15 N 1.65603 * 107.21446 * 274.95094 * 12 2 1
16 16 C 1.46918 * 120.63269 * 53.56149 * 15 12 2
17 17 C 1.53196 * 108.77767 * 233.62563 * 16 15 12
18 18 C 1.53032 * 109.31491 * 305.36903 * 17 16 15
19 19 C 1.53048 * 109.53791 * 61.36175 * 18 17 16
20 20 C 1.46930 * 120.62550 * 233.58409 * 15 12 2
21 21 H 1.09007 * 109.58335 * 246.15514 * 20 15 12
22 22 C 1.52998 * 109.58737 * 6.44088 * 20 15 12
23 23 C 1.50700 * 109.47015 * 289.31357 * 22 20 15
24 24 O 1.20823 * 120.00030 * 4.75453 * 23 22 20
25 25 O 1.34226 * 119.99647 * 184.75495 * 23 22 20
26 26 H 1.09004 * 109.46862 * 269.99908 * 1 2 3
27 27 H 1.08998 * 109.47435 * 30.00347 * 1 2 3
28 28 H 1.08997 * 109.46663 * 150.00272 * 1 2 3
29 29 H 1.08997 * 109.46959 * 39.81665 * 3 2 1
30 30 H 1.08997 * 109.47406 * 159.82193 * 3 2 1
31 31 H 0.97004 * 120.00472 * 179.97438 * 7 6 4
32 32 H 1.09003 * 109.58953 * 353.41979 * 16 15 12
33 33 H 1.09002 * 109.58797 * 113.84244 * 16 15 12
34 34 H 1.09002 * 109.49090 * 65.32111 * 17 16 15
35 35 H 1.09003 * 109.49609 * 185.41170 * 17 16 15
36 36 H 1.09001 * 109.45732 * 301.34339 * 18 17 16
37 37 H 1.08991 * 109.46491 * 181.38277 * 18 17 16
38 38 H 1.09001 * 109.49326 * 178.68911 * 19 18 17
39 39 H 1.08994 * 109.49477 * 58.58847 * 19 18 17
40 40 H 1.08993 * 109.46984 * 49.31785 * 22 20 15
41 41 H 1.09008 * 109.46886 * 169.31655 * 22 20 15
42 42 H 0.96700 * 117.00050 * 180.02562 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.2388 1.8250 -1.4001
5 1 1.7662 1.2874 -2.2088
6 6 2.8788 3.0207 -1.6482
7 7 3.4529 3.6761 -0.6632
8 14 2.9305 3.7098 -3.3837
9 1 2.2156 2.7888 -4.3035
10 1 2.2732 5.0411 -3.4075
11 1 4.3434 3.8475 -3.8198
12 16 2.2932 -1.4341 0.0006
13 8 3.6127 -1.1357 -0.4341
14 8 1.4562 -2.3809 -0.6492
15 7 2.4200 -1.9260 1.5768
16 6 1.2247 -2.0436 2.4229
17 6 1.4433 -1.2284 3.7014
18 6 2.7387 -1.6840 4.3768
19 6 3.9209 -1.4352 3.4372
20 6 3.7303 -2.2528 2.1558
21 1 3.7706 -3.3163 2.3915
22 6 4.8342 -1.9072 1.1543
23 6 4.7919 -2.8803 0.0044
24 8 3.9120 -3.7060 -0.0562
25 8 5.7319 -2.8297 -0.9524
26 1 -0.3633 0.0000 1.0277
27 1 -0.3634 0.8899 -0.5139
28 1 -0.3632 -0.8900 -0.5138
29 1 1.6956 1.9781 0.6580
30 1 3.2145 1.1013 0.3545
31 1 3.9035 4.5172 -0.8378
32 1 0.3580 -1.6569 1.8867
33 1 1.0607 -3.0900 2.6804
34 1 1.5167 -0.1703 3.4500
35 1 0.6047 -1.3842 4.3801
36 1 2.6743 -2.7478 4.6055
37 1 2.8841 -1.1226 5.2997
38 1 4.8457 -1.7384 3.9279
39 1 3.9710 -0.3752 3.1884
40 1 4.6810 -0.8952 0.7797
41 1 5.8044 -1.9692 1.6473
42 1 5.6629 -3.4741 -1.6701
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001593728811.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:30:35
Heat of formation + Delta-G solvation = -134.349295 kcal
Electronic energy + Delta-G solvation = -28140.407475 eV
Core-core repulsion = 24248.702305 eV
Total energy + Delta-G solvation = -3891.705170 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 320.128 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.30425 -38.41269 -36.91705 -35.81009 -35.53041 -35.17737 -32.79432 -32.50320
-32.06904 -28.18535 -27.78950 -25.17811 -24.27535 -23.04241 -22.28887 -20.91894
-20.33916 -18.61289 -17.79324 -17.14573 -16.81649 -16.36023 -16.13478 -15.87895
-15.67011 -14.79987 -14.59539 -14.43613 -14.27044 -13.63532 -13.51425 -13.39202
-13.28480 -12.85842 -12.40939 -12.30542 -12.18633 -12.09854 -11.64062 -11.61522
-11.28613 -11.17169 -11.10405 -11.04786 -10.96809 -10.77693 -10.72120 -10.56669
-10.50197 -10.16696 -10.04949 -9.77299 -9.63760 -8.76272 -8.49616 -8.11073
-6.11441 -4.15696 1.12482 2.69952 3.27649 3.35600 3.40404 3.45051
3.47483 3.99252 4.40659 4.54912 4.74799 4.84674 5.00740 5.08558
5.20222 5.23931 5.29244 5.34716 5.53946 5.59407 5.64010 5.71824
5.72452 5.84057 5.92385 5.93551 6.02174 6.10424 6.19256 6.29011
6.39619 6.49658 6.56925 6.74692 6.94180 7.18979 7.36825 7.54459
7.86165 8.15658 8.30210 8.87513 9.50117 10.96983
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.013973 B = 0.006053 C = 0.005337
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2003.398845 B = 4624.711231 C = 5244.727812
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.090 3.910
2 N -0.996 5.996
3 C 0.257 3.743
4 C -0.531 4.531
5 H 0.060 0.940
6 C 0.064 3.936
7 N -0.893 5.893
8 Si 0.896 3.104
9 H -0.272 1.272
10 H -0.283 1.283
11 H -0.281 1.281
12 S 2.784 3.216
13 O -0.969 6.969
14 O -0.984 6.984
15 N -1.002 6.002
16 C 0.128 3.872
17 C -0.136 4.136
18 C -0.113 4.113
19 C -0.130 4.130
20 C 0.175 3.825
21 H 0.080 0.920
22 C -0.160 4.160
23 C 0.514 3.486
24 O -0.560 6.560
25 O -0.506 6.506
26 H 0.041 0.959
27 H 0.082 0.918
28 H 0.064 0.936
29 H 0.033 0.967
30 H 0.042 0.958
31 H 0.263 0.737
32 H 0.077 0.923
33 H 0.067 0.933
34 H 0.073 0.927
35 H 0.071 0.929
36 H 0.062 0.938
37 H 0.065 0.935
38 H 0.074 0.926
39 H 0.077 0.923
40 H 0.175 0.825
41 H 0.102 0.898
42 H 0.402 0.598
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.246 -9.976 10.665 14.605
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 N -0.838 5.838
3 C 0.136 3.864
4 C -0.571 4.571
5 H 0.078 0.922
6 C -0.139 4.139
7 N -0.532 5.532
8 Si 0.723 3.277
9 H -0.197 1.197
10 H -0.209 1.209
11 H -0.207 1.207
12 S 2.796 3.204
13 O -0.953 6.953
14 O -0.966 6.966
15 N -0.841 5.841
16 C 0.003 3.997
17 C -0.175 4.175
18 C -0.150 4.150
19 C -0.169 4.169
20 C 0.068 3.932
21 H 0.098 0.902
22 C -0.199 4.199
23 C 0.361 3.639
24 O -0.454 6.454
25 O -0.315 6.315
26 H 0.059 0.941
27 H 0.100 0.900
28 H 0.083 0.917
29 H 0.051 0.949
30 H 0.060 0.940
31 H 0.073 0.927
32 H 0.095 0.905
33 H 0.086 0.914
34 H 0.092 0.908
35 H 0.090 0.910
36 H 0.080 0.920
37 H 0.084 0.916
38 H 0.093 0.907
39 H 0.095 0.905
40 H 0.191 0.809
41 H 0.120 0.880
42 H 0.260 0.740
Dipole moment (debyes) X Y Z Total
from point charges -0.048 -10.176 10.223 14.425
hybrid contribution -0.128 0.303 -1.140 1.187
sum -0.176 -9.873 9.083 13.416
Atomic orbital electron populations
1.21441 0.80243 1.03745 1.00209 1.57567 1.14345 1.23272 1.88633
1.19077 0.91155 0.78475 0.97734 1.21513 1.35404 1.05964 0.94179
0.92181 1.24915 0.94948 0.96609 0.97393 1.69917 1.35988 1.16073
1.31257 0.86479 0.77994 0.78744 0.84465 1.19680 1.20909 1.20731
1.02085 0.73178 0.72272 0.72831 1.93506 1.35992 1.84092 1.81729
1.93510 1.69326 1.61299 1.72503 1.58165 1.11713 1.83084 1.31130
1.21311 0.86108 1.00359 0.91970 1.21931 0.97955 1.01027 0.96620
1.21417 0.94447 1.01254 0.97915 1.21963 0.98629 1.01469 0.94880
1.20726 0.80534 0.99614 0.92338 0.90192 1.22688 1.00764 1.04945
0.91473 1.22949 0.77750 0.80317 0.82913 1.90783 1.36676 1.39658
1.78325 1.84500 1.52238 1.59336 1.35464 0.94085 0.89968 0.91694
0.94911 0.94020 0.92700 0.90520 0.91438 0.90838 0.91045 0.91963
0.91644 0.90714 0.90476 0.80854 0.88001 0.74040
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.57 9.67 59.85 0.58 2.15 16
2 N -1.00 -20.76 3.21 -123.04 -0.40 -21.15 16
3 C 0.26 6.27 5.19 -5.19 -0.03 6.24 16
4 C -0.53 -14.64 9.33 -34.44 -0.32 -14.96 16
5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16
6 C 0.06 1.77 5.46 -17.83 -0.10 1.67 16
7 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16
8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16
9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
12 S 2.78 57.83 4.03 -107.50 -0.43 57.40 16
13 O -0.97 -21.60 9.09 -68.32 -0.62 -22.22 16
14 O -0.98 -23.06 16.43 -61.73 -1.01 -24.07 16
15 N -1.00 -16.22 3.14 -106.47 -0.33 -16.55 16
16 C 0.13 1.68 6.53 -3.71 -0.02 1.65 16
17 C -0.14 -1.45 6.08 -26.61 -0.16 -1.61 16
18 C -0.11 -1.09 5.88 -26.69 -0.16 -1.25 16
19 C -0.13 -1.43 5.36 -26.61 -0.14 -1.58 16
20 C 0.17 2.45 2.46 -67.60 -0.17 2.28 16
21 H 0.08 1.08 7.83 -51.93 -0.41 0.67 16
22 C -0.16 -2.47 4.78 -27.88 -0.13 -2.60 16
23 C 0.51 9.21 5.23 36.01 0.19 9.40 16
24 O -0.56 -11.33 14.60 -27.05 -0.40 -11.72 16
25 O -0.51 -8.16 13.41 -44.46 -0.60 -8.76 16
26 H 0.04 0.57 7.10 -51.93 -0.37 0.20 16
27 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16
28 H 0.06 1.10 7.07 -51.93 -0.37 0.74 16
29 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16
30 H 0.04 1.06 7.30 -51.93 -0.38 0.68 16
31 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16
32 H 0.08 0.99 5.69 -51.93 -0.30 0.69 16
33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16
34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
40 H 0.17 3.13 5.46 -55.75 -0.30 2.82 16
41 H 0.10 1.19 8.12 -51.92 -0.42 0.77 16
42 H 0.40 4.75 9.10 45.56 0.41 5.17 16
LS Contribution 341.04 15.07 5.14 5.14
Total: -1.00 -35.27 341.04 -8.87 -44.14
By element:
Atomic # 1 Polarization: 9.99 SS G_CDS: -5.47 Total: 4.52 kcal
Atomic # 6 Polarization: 1.87 SS G_CDS: -0.46 Total: 1.41 kcal
Atomic # 7 Polarization: -62.33 SS G_CDS: 0.01 Total: -62.33 kcal
Atomic # 8 Polarization: -64.15 SS G_CDS: -2.63 Total: -66.78 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal
Atomic # 16 Polarization: 57.83 SS G_CDS: -0.43 Total: 57.40 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -35.27 -8.87 -44.14 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001593728811.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.209 kcal
(2) G-P(sol) polarization free energy of solvation -35.267 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.476 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.140 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.349 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds