Wall clock time and date at job start Tue Mar 31 2020 13:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46727 * 2 1 4 4 C 1.46503 * 120.00053 * 85.00278 * 3 2 1 5 5 C 1.50702 * 109.47310 * 84.99451 * 4 3 2 6 6 H 1.08002 * 119.99611 * 359.72824 * 5 4 3 7 7 C 1.37876 * 120.00148 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99828 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00063 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47482 * 89.99971 * 9 7 5 11 11 H 1.48499 * 109.47325 * 210.00186 * 9 7 5 12 12 H 1.48505 * 109.46908 * 329.99858 * 9 7 5 13 13 S 1.65602 * 120.00447 * 264.99801 * 3 2 1 14 14 O 1.42103 * 106.39937 * 23.54151 * 13 3 2 15 15 O 1.42098 * 106.40492 * 156.46265 * 13 3 2 16 16 N 1.65597 * 107.21827 * 270.00800 * 13 3 2 17 17 C 1.47425 * 125.65440 * 90.02245 * 16 13 3 18 18 C 1.54902 * 104.83343 * 155.83241 * 17 16 13 19 19 C 1.55160 * 101.58373 * 37.01190 * 18 17 16 20 20 H 1.09000 * 110.72261 * 83.03657 * 19 18 17 21 21 C 1.50700 * 110.71861 * 206.13526 * 19 18 17 22 22 O 1.20824 * 120.00269 * 24.53995 * 21 19 18 23 23 O 1.34238 * 119.99555 * 204.54015 * 21 19 18 24 24 C 1.47027 * 125.64453 * 269.71378 * 16 13 3 25 25 H 1.09001 * 109.88377 * 61.67997 * 24 16 13 26 26 C 1.53003 * 109.88169 * 300.51262 * 24 16 13 27 27 H 1.08999 * 109.47330 * 60.00370 * 1 2 3 28 28 H 1.09007 * 109.46959 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47203 * 299.99598 * 1 2 3 30 30 H 1.08997 * 109.47203 * 240.00402 * 2 1 3 31 31 H 1.08995 * 109.46798 * 120.00375 * 2 1 3 32 32 H 1.09004 * 109.47222 * 324.99902 * 4 3 2 33 33 H 1.08996 * 109.47430 * 204.99934 * 4 3 2 34 34 H 0.97001 * 119.99659 * 180.02562 * 8 7 5 35 35 H 1.09002 * 110.36386 * 274.67238 * 17 16 13 36 36 H 1.09000 * 110.36121 * 36.99231 * 17 16 13 37 37 H 1.09005 * 111.00698 * 155.08221 * 18 17 16 38 38 H 1.09001 * 111.00678 * 278.89621 * 18 17 16 39 39 H 0.96702 * 116.99822 * 179.97438 * 23 21 19 40 40 H 1.09000 * 109.46952 * 65.60478 * 26 24 16 41 41 H 1.08998 * 109.47366 * 185.60651 * 26 24 16 42 42 H 1.09002 * 109.47412 * 305.60814 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4947 1.7888 1.8824 6 1 4.1703 1.1079 1.3860 7 6 3.8524 2.3606 3.0849 8 7 5.0190 2.0818 3.6243 9 14 2.6802 3.5311 3.9479 10 1 1.7956 2.7627 4.8602 11 1 3.4590 4.5226 4.7325 12 1 1.8539 4.2388 2.9371 13 16 2.4121 2.1203 -1.4286 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5187 -1.1997 16 7 4.0143 1.8138 -1.7137 17 6 4.5491 0.6595 -2.4588 18 6 5.9330 1.1269 -2.9742 19 6 6.4341 1.9878 -1.7845 20 1 6.8838 1.3591 -1.0160 21 6 7.4129 3.0317 -2.2568 22 8 7.3830 3.4134 -3.4028 23 8 8.3181 3.5375 -1.4043 24 6 5.1388 2.6511 -1.2711 25 1 5.1571 2.7020 -0.1824 26 6 5.0032 4.0574 -1.8584 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3617 1.8097 1.9454 33 1 2.0920 3.1802 1.0757 34 1 5.2705 2.4837 4.4706 35 1 4.6609 -0.1999 -1.7977 36 1 3.8960 0.4129 -3.2959 37 1 6.5933 0.2769 -3.1466 38 1 5.8308 1.7289 -3.8771 39 1 8.9252 4.2044 -1.7533 40 1 4.1192 4.5410 -1.4428 41 1 5.8885 4.6423 -1.6090 42 1 4.9053 3.9907 -2.9420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596299632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:44 Heat of formation + Delta-G solvation = -186.284010 kcal Electronic energy + Delta-G solvation = -27515.160966 eV Core-core repulsion = 23621.203738 eV Total energy + Delta-G solvation = -3893.957228 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74822 -39.30544 -38.39806 -37.74413 -37.04909 -36.92938 -34.62330 -32.51280 -32.20771 -31.78644 -28.90204 -27.46201 -24.62860 -24.42867 -23.39139 -23.03294 -21.01980 -19.84875 -19.17544 -19.01511 -18.54197 -18.43423 -17.64501 -17.28819 -16.92687 -16.27101 -15.97792 -15.70831 -15.31666 -14.83087 -14.63248 -14.50843 -14.31669 -14.07843 -13.88490 -13.78965 -13.68187 -13.46852 -13.24890 -13.10294 -13.08692 -12.88079 -12.71968 -12.66191 -12.47467 -12.30756 -12.29191 -12.01176 -11.89291 -11.77999 -11.70461 -11.58434 -11.47135 -10.71711 -10.05955 -9.76191 -8.24072 -6.26423 -0.40396 1.13333 1.36396 1.41980 1.50109 1.83639 2.17627 2.37562 2.51032 3.10367 3.14460 3.41053 3.57560 3.89428 3.95702 4.15504 4.28221 4.36133 4.37407 4.41596 4.44151 4.49906 4.64335 4.68660 4.72005 4.86366 4.93908 4.97363 5.00358 5.04781 5.17051 5.20717 5.28114 5.35997 5.41493 5.47982 5.52487 5.60631 5.86948 6.36290 6.77955 7.00807 7.37255 8.90074 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.006834 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.069811 B = 4096.295023 C = 5613.743021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 N -0.990 5.990 4 C 0.221 3.779 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.029 3.971 8 N -0.930 5.930 9 Si 0.914 3.086 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.256 1.256 13 S 2.808 3.192 14 O -0.995 6.995 15 O -1.003 7.003 16 N -1.012 6.012 17 C 0.110 3.890 18 C -0.104 4.104 19 C -0.091 4.091 20 H 0.129 0.871 21 C 0.504 3.496 22 O -0.535 6.535 23 O -0.512 6.512 24 C 0.166 3.834 25 H 0.080 0.920 26 C -0.183 4.183 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.265 0.735 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.427 0.573 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -3.729 -10.233 11.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.006 4.006 3 N -0.830 5.830 4 C 0.096 3.904 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.171 4.171 8 N -0.570 5.570 9 Si 0.738 3.262 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.180 1.180 13 S 2.819 3.181 14 O -0.979 6.979 15 O -0.987 6.987 16 N -0.851 5.851 17 C -0.014 4.014 18 C -0.142 4.142 19 C -0.112 4.112 20 H 0.147 0.853 21 C 0.347 3.653 22 O -0.425 6.425 23 O -0.325 6.325 24 C 0.060 3.940 25 H 0.098 0.902 26 C -0.242 4.242 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.103 0.897 39 H 0.289 0.711 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.883 -3.371 -10.761 11.311 hybrid contribution 0.413 1.047 0.967 1.484 sum 1.297 -2.324 -9.794 10.149 Atomic orbital electron populations 1.22209 0.95414 1.03474 1.01641 1.21299 0.94890 0.81040 1.03417 1.57595 1.78913 1.24262 1.22268 1.19338 0.96728 0.92032 0.82324 1.21580 1.01744 1.27618 1.05896 0.92049 1.25489 0.96217 0.97526 0.97824 1.69987 1.22173 1.45371 1.19452 0.86216 0.80159 0.80087 0.79701 1.18771 1.21069 1.17997 1.00912 0.72041 0.72616 0.72556 1.93530 1.70513 1.76464 1.57386 1.93496 1.86267 1.32594 1.86370 1.58915 1.22485 1.35237 1.68499 1.22300 0.95284 0.87936 0.95889 1.22823 0.95584 0.99950 0.95878 1.22161 0.91946 0.95283 1.01807 0.85314 1.22920 0.79106 0.80380 0.82883 1.90686 1.71010 1.59841 1.20957 1.84590 1.45326 1.56896 1.45728 1.21015 0.84182 0.89643 0.99205 0.90246 1.22572 1.03593 0.96301 1.01719 0.93385 0.89031 0.92695 0.89787 0.90036 0.93964 0.94869 0.92534 0.89564 0.88824 0.86061 0.89662 0.71101 0.90848 0.91308 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.59 10.24 71.98 0.74 -3.86 16 2 C 0.12 3.70 6.06 86.38 0.52 4.22 16 3 N -0.99 -37.89 2.82 -519.86 -1.47 -39.36 16 4 C 0.22 9.82 4.50 85.63 0.39 10.20 16 5 C -0.53 -26.80 9.51 25.60 0.24 -26.55 16 6 H 0.06 3.31 8.06 -2.91 -0.02 3.28 16 7 C 0.03 1.55 5.47 84.65 0.46 2.02 16 8 N -0.93 -52.79 13.96 21.45 0.30 -52.49 16 9 Si 0.91 41.35 27.47 68.60 1.88 43.24 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.26 -11.30 6.54 99.48 0.65 -10.65 16 13 S 2.81 107.35 6.27 -56.49 -0.35 107.00 16 14 O -0.99 -38.00 16.43 -128.00 -2.10 -40.10 16 15 O -1.00 -44.29 13.78 -128.00 -1.76 -46.05 16 16 N -1.01 -33.35 3.47 -484.28 -1.68 -35.03 16 17 C 0.11 2.70 7.11 86.85 0.62 3.31 16 18 C -0.10 -2.22 6.39 31.98 0.20 -2.02 16 19 C -0.09 -2.39 3.39 -10.35 -0.04 -2.43 16 20 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 21 C 0.50 13.08 5.31 71.24 0.38 13.45 16 22 O -0.53 -15.65 15.94 21.97 0.35 -15.30 16 23 O -0.51 -11.35 13.42 -51.49 -0.69 -12.04 16 24 C 0.17 5.60 3.63 45.34 0.16 5.76 16 25 H 0.08 3.20 7.71 -2.39 -0.02 3.18 16 26 C -0.18 -6.26 7.93 71.98 0.57 -5.69 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 2.28 7.61 -2.39 -0.02 2.26 16 31 H 0.08 2.56 8.11 -2.39 -0.02 2.54 16 32 H 0.04 1.80 7.53 -2.38 -0.02 1.78 16 33 H 0.03 1.58 5.97 -2.39 -0.01 1.57 16 34 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 2.11 7.78 -2.39 -0.02 2.09 16 37 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.08 1.99 7.22 -2.39 -0.02 1.97 16 39 H 0.43 5.31 9.10 -74.06 -0.67 4.64 16 40 H 0.07 2.85 5.90 -2.39 -0.01 2.84 16 41 H 0.07 2.15 6.82 -2.39 -0.02 2.13 16 42 H 0.06 2.12 7.85 -2.39 -0.02 2.10 16 Total: -1.00 -68.74 350.70 -0.97 -69.71 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.31 Total: 22.00 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 4.25 Total: -1.57 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -2.85 Total: -126.88 kcal Atomic # 8 Polarization: -109.29 SS G_CDS: -4.21 Total: -113.49 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.88 Total: 43.24 kcal Atomic # 16 Polarization: 107.35 SS G_CDS: -0.35 Total: 107.00 kcal Total: -68.74 -0.97 -69.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.578 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds