Wall clock time and date at job start Tue Mar 31 2020 12:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38252 * 119.88453 * 2 1 4 4 C 1.38995 * 120.23222 * 180.25551 * 3 2 1 5 5 N 1.39709 * 120.00208 * 179.76889 * 4 3 2 6 6 C 1.46491 * 120.00081 * 179.72712 * 5 4 3 7 7 C 1.52999 * 109.47365 * 182.04502 * 6 5 4 8 8 C 1.50690 * 115.55026 * 319.93843 * 7 6 5 9 9 H 1.08004 * 120.00326 * 95.41463 * 8 7 6 10 10 C 1.37878 * 120.00193 * 275.41661 * 8 7 6 11 11 N 1.31520 * 119.99873 * 7.23068 * 10 8 7 12 12 Si 1.86801 * 120.00261 * 187.23105 * 10 8 7 13 13 H 1.48500 * 109.46872 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46985 * 120.00039 * 12 10 8 15 15 H 1.48493 * 109.47199 * 239.99616 * 12 10 8 16 16 C 1.53005 * 117.50160 * 174.26470 * 7 6 5 17 17 C 1.52993 * 60.03233 * 252.47836 * 16 7 6 18 18 C 1.38667 * 119.99418 * 359.49220 * 4 3 2 19 19 C 1.39507 * 119.76699 * 0.25369 * 18 4 3 20 20 C 1.47743 * 120.11143 * 179.97438 * 19 18 4 21 21 O 1.21470 * 119.99772 * 179.97438 * 20 19 18 22 22 O 1.34711 * 120.00188 * 0.02562 * 20 19 18 23 23 C 1.37963 * 119.88595 * 179.74953 * 2 1 3 24 24 N 1.48025 * 119.99780 * 359.97438 * 23 2 1 25 25 O 1.21806 * 119.99944 * 270.02306 * 24 23 2 26 26 O 1.21796 * 120.00469 * 90.02499 * 24 23 2 27 27 H 1.09000 * 109.47210 * 270.25074 * 1 2 3 28 28 H 1.09002 * 109.47125 * 30.25648 * 1 2 3 29 29 H 1.08999 * 109.46749 * 150.25314 * 1 2 3 30 30 H 1.08009 * 119.88385 * 0.02562 * 3 2 1 31 31 H 0.97001 * 119.99801 * 359.72242 * 5 4 3 32 32 H 1.09002 * 109.47683 * 62.04034 * 6 5 4 33 33 H 1.09004 * 109.46746 * 302.04454 * 6 5 4 34 34 H 0.96999 * 119.99846 * 174.98696 * 11 10 8 35 35 H 1.09009 * 117.49514 * 359.97438 * 16 7 6 36 36 H 1.09002 * 117.49943 * 144.96918 * 16 7 6 37 37 H 1.09000 * 117.49859 * 107.50393 * 17 16 7 38 38 H 1.09008 * 117.49567 * 252.51711 * 17 16 7 39 39 H 1.07991 * 120.11366 * 180.27211 * 18 4 3 40 40 H 0.96696 * 117.00356 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1987 0.0000 4 6 3.5858 1.2071 -0.0054 5 7 4.2770 2.4212 -0.0102 6 6 5.7419 2.4301 -0.0098 7 6 6.2432 3.8749 0.0358 8 6 5.4731 4.8570 -0.8088 9 1 4.6844 5.4477 -0.3664 10 6 5.7752 5.0016 -2.1462 11 7 6.6341 4.1862 -2.7182 12 14 4.9647 6.3556 -3.1459 13 1 4.0453 7.1311 -2.2749 14 1 6.0083 7.2597 -3.6926 15 1 4.1967 5.7527 -4.2647 16 6 7.7505 4.0956 0.1786 17 6 6.8209 4.3820 1.3595 18 6 4.2863 0.0104 -0.0001 19 6 3.5911 -1.1991 0.0052 20 6 4.3298 -2.4786 0.0103 21 8 3.7224 -3.5305 0.0154 22 8 5.6769 -2.4786 0.0103 23 6 2.1944 -1.1962 0.0052 24 7 1.4517 -2.4766 0.0114 25 8 1.1462 -2.9983 1.0688 26 8 1.1461 -3.0085 -1.0408 27 1 -0.3633 0.0045 1.0276 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3633 -0.8923 -0.5099 30 1 1.6520 2.1319 0.0004 31 1 3.7869 3.2583 -0.0139 32 1 6.1085 1.9467 -0.9154 33 1 6.1082 1.8907 0.8637 34 1 6.7922 4.2408 -3.6737 35 1 8.3849 3.2114 0.2404 36 1 8.1851 4.9509 -0.3388 37 1 6.8439 3.6863 2.1983 38 1 6.6438 5.4258 1.6190 39 1 5.3662 0.0148 0.0002 40 1 6.1159 -3.3402 0.0141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600281004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:32 Heat of formation + Delta-G solvation = -56.904908 kcal Electronic energy + Delta-G solvation = -26878.282140 eV Core-core repulsion = 22854.491260 eV Total energy + Delta-G solvation = -4023.790881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.26889 -41.63689 -40.53689 -38.77464 -37.47877 -37.45391 -36.30134 -34.14037 -34.01417 -31.77232 -29.20256 -27.83186 -27.01487 -26.81010 -25.35863 -22.92366 -22.66129 -22.23395 -21.21454 -20.09831 -19.79877 -19.37830 -18.68842 -18.50356 -17.93146 -17.04466 -16.97209 -16.76375 -16.52823 -15.75193 -15.57899 -15.42643 -14.91832 -14.60345 -14.44409 -14.38627 -14.22341 -13.48088 -13.41036 -13.25569 -12.97739 -12.91141 -12.88059 -12.84469 -12.70499 -12.34479 -12.17578 -12.15841 -12.08186 -12.04132 -11.53446 -11.42649 -10.82114 -10.46919 -10.30237 -9.98585 -8.66846 -8.13177 -6.25122 -0.85012 -0.47927 -0.13034 0.44816 1.15565 1.39379 1.47218 1.52778 1.60509 2.27057 2.35060 2.42520 3.17659 3.20268 3.48261 3.56143 3.72638 3.79456 4.00301 4.20512 4.22518 4.34477 4.46303 4.52259 4.52664 4.66579 4.70884 4.82956 4.90349 4.94253 5.00559 5.04307 5.14324 5.20808 5.28366 5.39321 5.52381 5.64664 5.75739 6.17299 6.38712 6.53122 6.61388 6.78230 6.83402 7.45759 8.93582 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015586 B = 0.003684 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.054272 B = 7598.138947 C = 8400.632390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.010 3.990 3 C -0.157 4.157 4 C 0.252 3.748 5 N -0.687 5.687 6 C 0.167 3.833 7 C 0.006 3.994 8 C -0.505 4.505 9 H 0.062 0.938 10 C 0.038 3.962 11 N -0.899 5.899 12 Si 0.938 3.062 13 H -0.263 1.263 14 H -0.292 1.292 15 H -0.287 1.287 16 C -0.161 4.161 17 C -0.184 4.184 18 C -0.136 4.136 19 C -0.044 4.044 20 C 0.526 3.474 21 O -0.536 6.536 22 O -0.487 6.487 23 C -0.083 4.083 24 N 0.047 4.953 25 O -0.156 6.156 26 O -0.173 6.173 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.054 0.946 30 H 0.177 0.823 31 H 0.416 0.584 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.259 0.741 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.160 0.840 40 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 -5.267 6.532 10.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.007 3.993 3 C -0.181 4.181 4 C 0.139 3.861 5 N -0.308 5.308 6 C 0.043 3.957 7 C 0.005 3.995 8 C -0.542 4.542 9 H 0.080 0.920 10 C -0.164 4.164 11 N -0.536 5.536 12 Si 0.765 3.235 13 H -0.187 1.187 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.200 4.200 17 C -0.221 4.221 18 C -0.159 4.159 19 C -0.048 4.048 20 C 0.370 3.630 21 O -0.428 6.428 22 O -0.301 6.301 23 C -0.167 4.167 24 N 0.575 4.425 25 O -0.380 6.380 26 O -0.392 6.392 27 H 0.121 0.879 28 H 0.134 0.866 29 H 0.073 0.927 30 H 0.195 0.805 31 H 0.255 0.745 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.177 0.823 40 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -4.986 -4.421 6.341 9.199 hybrid contribution 0.109 -0.099 -1.051 1.061 sum -4.877 -4.521 5.290 8.498 Atomic orbital electron populations 1.21107 0.87417 1.04953 1.05045 1.19389 0.98028 0.88492 0.93342 1.20868 0.91427 0.98340 1.07479 1.18168 0.91819 0.86874 0.89270 1.45158 1.06739 1.04826 1.74054 1.20865 0.78706 0.97184 0.98974 1.19093 0.93073 0.92303 0.95029 1.20580 1.18588 1.21412 0.93665 0.92003 1.25520 0.94940 0.96924 0.98981 1.70055 1.35019 1.37837 1.10672 0.85822 0.78370 0.80290 0.79005 1.18693 1.21811 1.21340 1.22448 0.94475 1.01087 1.01950 1.23106 1.06119 1.01095 0.91801 1.20945 1.01341 0.88404 1.05217 1.18352 0.89181 0.92391 1.04833 1.20759 0.82055 0.88344 0.71794 1.90992 1.70270 1.34315 1.47206 1.84516 1.18238 1.42911 1.84403 1.20409 0.90315 0.83245 1.22744 1.43406 0.97737 1.01773 0.99616 1.94464 1.56939 1.65841 1.20744 1.94487 1.57757 1.65407 1.21551 0.87895 0.86603 0.92732 0.80548 0.74517 0.93727 0.92081 0.93227 0.90460 0.92451 0.88858 0.90441 0.82251 0.69676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.76 71.24 0.70 -1.73 16 2 C 0.01 0.25 5.87 -19.93 -0.12 0.13 16 3 C -0.16 -3.55 9.54 22.45 0.21 -3.34 16 4 C 0.25 6.76 6.65 38.17 0.25 7.02 16 5 N -0.69 -20.49 5.54 -339.53 -1.88 -22.37 16 6 C 0.17 5.69 4.99 86.38 0.43 6.12 16 7 C 0.01 0.22 1.71 -52.91 -0.09 0.13 16 8 C -0.50 -22.27 7.41 25.60 0.19 -22.08 16 9 H 0.06 2.68 7.82 -2.91 -0.02 2.66 16 10 C 0.04 1.81 5.39 84.65 0.46 2.26 16 11 N -0.90 -45.25 12.98 21.45 0.28 -44.97 16 12 Si 0.94 38.31 29.55 68.60 2.03 40.34 16 13 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 14 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 16 C -0.16 -6.34 9.51 30.59 0.29 -6.05 16 17 C -0.18 -6.31 9.89 30.62 0.30 -6.01 16 18 C -0.14 -3.75 8.87 22.68 0.20 -3.54 16 19 C -0.04 -1.32 5.87 -20.11 -0.12 -1.44 16 20 C 0.53 15.54 8.27 70.34 0.58 16.12 16 21 O -0.54 -19.10 15.22 26.33 0.40 -18.70 16 22 O -0.49 -10.33 12.68 -56.20 -0.71 -11.05 16 23 C -0.08 -2.56 6.12 36.65 0.22 -2.34 16 24 N 0.05 1.65 1.47 -45.79 -0.07 1.59 16 25 O -0.16 -5.62 18.92 22.53 0.43 -5.19 16 26 O -0.17 -6.46 18.78 22.55 0.42 -6.04 16 27 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 28 H 0.12 1.54 8.08 -2.39 -0.02 1.52 16 29 H 0.05 1.20 7.30 -2.39 -0.02 1.19 16 30 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.42 12.37 7.42 -92.71 -0.69 11.68 16 32 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 33 H 0.06 1.82 7.65 -2.39 -0.02 1.80 16 34 H 0.26 12.78 8.32 -92.71 -0.77 12.00 16 35 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 36 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.09 2.72 8.09 -2.39 -0.02 2.70 16 38 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 39 H 0.16 4.23 6.28 -2.92 -0.02 4.21 16 40 H 0.44 4.85 9.11 -74.06 -0.67 4.18 16 Total: -1.00 -61.41 355.03 4.16 -57.25 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.25 Total: 23.89 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 3.52 Total: -14.74 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -1.67 Total: -65.75 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: 0.54 Total: -40.97 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -61.41 4.16 -57.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600281004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.340 kcal (2) G-P(sol) polarization free energy of solvation -61.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds