Wall clock time and date at job start Tue Mar 31 2020 12:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38579 * 119.82903 * 2 1 4 4 C 1.38014 * 120.42256 * 179.72358 * 3 2 1 5 5 C 1.38899 * 120.06871 * 0.55895 * 4 3 2 6 6 N 1.39082 * 120.17299 * 179.74444 * 5 4 3 7 7 C 1.34774 * 120.00317 * 35.24303 * 6 5 4 8 8 O 1.21364 * 119.99368 * 355.54158 * 7 6 5 9 9 C 1.49355 * 120.00223 * 175.26934 * 7 6 5 10 10 O 1.21354 * 120.00345 * 0.27236 * 9 7 6 11 11 N 1.34778 * 119.99918 * 180.27487 * 9 7 6 12 12 C 1.46498 * 119.99940 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47261 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47230 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00232 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00076 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00043 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00322 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47188 * 59.99589 * 18 16 14 20 20 H 1.48498 * 109.47555 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46891 * 299.99751 * 18 16 14 22 22 C 1.40373 * 119.65401 * 359.47094 * 5 4 3 23 23 C 1.47384 * 120.20574 * 180.27361 * 22 5 4 24 24 O 1.21508 * 120.00179 * 5.37104 * 23 22 5 25 25 O 1.34753 * 119.99896 * 185.37272 * 23 22 5 26 26 C 1.37793 * 119.82817 * 180.02562 * 2 1 3 27 27 H 1.09009 * 109.46920 * 269.97139 * 1 2 3 28 28 H 1.08997 * 109.47331 * 29.96558 * 1 2 3 29 29 H 1.08996 * 109.47532 * 149.97896 * 1 2 3 30 30 H 1.08001 * 119.78946 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.96920 * 180.30181 * 4 3 2 32 32 H 0.96999 * 119.99792 * 215.24477 * 6 5 4 33 33 H 0.96997 * 120.00058 * 359.97438 * 11 9 7 34 34 H 1.08997 * 109.47426 * 299.99986 * 12 11 9 35 35 H 1.09003 * 109.47166 * 60.00094 * 12 11 9 36 36 H 1.08997 * 109.47045 * 300.00410 * 13 12 11 37 37 H 1.09003 * 109.46798 * 60.00059 * 13 12 11 38 38 H 0.96997 * 120.00129 * 180.02562 * 17 16 14 39 39 H 0.96696 * 117.00386 * 180.02562 * 25 23 22 40 40 H 1.08007 * 120.03937 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1963 1.2022 0.0000 4 6 3.5763 1.2165 0.0057 5 6 4.2847 0.0217 -0.0002 6 7 5.6755 0.0337 0.0003 7 6 6.3410 0.9892 0.6788 8 8 5.7291 1.8854 1.2220 9 6 7.8312 0.9417 0.7673 10 8 8.4431 0.0455 0.2241 11 7 8.4964 1.8942 1.4505 12 6 9.9580 1.8474 1.5378 13 6 10.4580 3.0352 2.3624 14 6 11.9616 2.9874 2.4516 15 1 12.5061 2.1893 1.9689 16 6 12.6421 3.9618 3.1505 17 7 11.9790 4.9334 3.7388 18 14 14.5058 3.9022 3.2618 19 1 15.0856 3.9689 1.8963 20 1 14.9910 5.0544 4.0630 21 1 14.9223 2.6352 3.9150 22 6 3.5896 -1.1978 -0.0007 23 6 4.3290 -2.4727 -0.0008 24 8 5.5401 -2.4727 0.0980 25 8 3.6620 -3.6384 -0.1106 26 6 2.1923 -1.1954 -0.0005 27 1 -0.3633 -0.0005 1.0278 28 1 -0.3634 0.8903 -0.5133 29 1 -0.3634 -0.8897 -0.5141 30 1 1.6500 2.1339 0.0004 31 1 4.1061 2.1576 0.0106 32 1 6.1664 -0.6458 -0.4879 33 1 8.0073 2.6108 1.8844 34 1 10.2638 0.9175 2.0172 35 1 10.3836 1.8965 0.5355 36 1 10.1523 3.9649 1.8826 37 1 10.0324 2.9865 3.3647 38 1 12.4578 5.6191 4.2301 39 1 4.1899 -4.4485 -0.1056 40 1 1.6501 -2.1295 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600442317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:00 Heat of formation + Delta-G solvation = -137.882159 kcal Electronic energy + Delta-G solvation = -25643.128669 eV Core-core repulsion = 21615.826352 eV Total energy + Delta-G solvation = -4027.302318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47562 -40.32201 -39.23742 -38.23764 -36.60930 -35.59436 -34.82076 -32.88037 -32.09760 -31.71860 -29.84485 -27.35202 -25.64758 -24.99201 -23.80586 -22.75710 -21.11866 -20.89832 -20.22494 -18.62625 -18.42158 -17.69768 -17.12094 -16.63225 -16.19512 -16.16299 -15.83638 -15.31877 -14.88839 -14.74302 -14.55479 -14.35425 -14.24364 -14.04490 -13.61169 -13.52749 -13.03479 -12.68150 -12.53823 -12.39564 -12.31989 -12.00964 -11.87225 -11.40466 -11.24161 -11.05117 -11.00117 -10.68975 -10.44831 -10.40041 -9.82893 -9.52804 -9.42772 -9.23879 -8.72775 -8.46813 -8.41840 -6.10448 -4.14183 0.22680 0.82789 1.55886 2.17372 2.37113 2.62182 3.21443 3.30756 3.34806 3.37620 3.43879 3.73202 4.28928 4.39249 4.45974 4.59001 4.65310 4.77892 4.94439 5.07407 5.22425 5.25990 5.26361 5.50060 5.52624 5.74451 5.80914 6.00430 6.11932 6.12538 6.16722 6.22968 6.48885 6.56694 6.67181 6.92270 7.42000 7.50456 7.56812 7.57912 7.80364 7.86522 8.17671 8.30312 8.91122 9.50670 11.00998 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024355 B = 0.002318 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.381963 B =12078.112524 C =13040.636408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.119 4.119 3 C -0.060 4.060 4 C -0.132 4.132 5 C 0.210 3.790 6 N -0.640 5.640 7 C 0.511 3.489 8 O -0.500 6.500 9 C 0.500 3.500 10 O -0.521 6.521 11 N -0.684 5.684 12 C 0.118 3.882 13 C 0.011 3.989 14 C -0.524 4.524 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.157 4.157 23 C 0.527 3.473 24 O -0.506 6.506 25 O -0.511 6.511 26 C -0.043 4.043 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.135 0.865 31 H 0.153 0.847 32 H 0.433 0.567 33 H 0.411 0.589 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.416 0.584 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.435 -12.266 -9.205 29.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C -0.078 4.078 4 C -0.152 4.152 5 C 0.113 3.887 6 N -0.290 5.290 7 C 0.294 3.706 8 O -0.373 6.373 9 C 0.279 3.721 10 O -0.398 6.398 11 N -0.335 5.335 12 C -0.003 4.003 13 C -0.026 4.026 14 C -0.563 4.563 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.161 4.161 23 C 0.372 3.628 24 O -0.396 6.396 25 O -0.323 6.323 26 C -0.061 4.061 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.170 0.830 32 H 0.277 0.723 33 H 0.246 0.754 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.275 0.725 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -25.161 -11.746 -9.042 29.202 hybrid contribution 1.411 -0.520 0.180 1.515 sum -23.749 -12.266 -8.862 28.161 Atomic orbital electron populations 1.20767 0.90309 1.03071 1.02646 1.19906 0.96761 0.92639 1.02667 1.21260 0.93468 0.98132 0.94977 1.21363 0.94242 0.97725 1.01841 1.17691 0.82753 0.92561 0.95716 1.43411 1.04405 1.31599 1.49576 1.20761 0.89784 0.81634 0.78391 1.90744 1.69333 1.33447 1.43809 1.19634 0.86862 0.83959 0.81682 1.90778 1.68683 1.34578 1.45736 1.46214 1.09987 1.26713 1.50601 1.21973 0.74674 1.02090 1.01563 1.19354 0.96681 0.91581 0.94980 1.20971 0.90966 1.10676 1.33650 0.92188 1.25002 0.98841 0.95235 0.95199 1.69947 1.35855 1.13259 1.34034 0.86546 0.85028 0.77576 0.78220 1.20088 1.21232 1.20097 1.18815 0.93934 0.88734 1.14645 1.20720 0.85449 0.84190 0.72415 1.90891 1.15043 1.87587 1.46029 1.84530 1.45318 1.17053 1.85416 1.21139 0.91452 0.98775 0.94752 0.90961 0.91244 0.91324 0.84675 0.82962 0.72342 0.75362 0.91740 0.91716 0.95627 0.95644 0.92706 0.72460 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.00 36.00 0.36 -0.15 16 2 C -0.12 -0.87 5.87 -104.66 -0.61 -1.49 16 3 C -0.06 -0.49 9.68 -39.54 -0.38 -0.87 16 4 C -0.13 -1.44 8.68 -39.42 -0.34 -1.78 16 5 C 0.21 2.57 6.30 -83.52 -0.53 2.04 16 6 N -0.64 -8.96 4.53 -10.11 -0.05 -9.00 16 7 C 0.51 8.06 7.72 -11.63 -0.09 7.97 16 8 O -0.50 -8.12 13.91 5.48 0.08 -8.04 16 9 C 0.50 8.96 7.89 -11.63 -0.09 8.87 16 10 O -0.52 -10.46 16.48 5.49 0.09 -10.37 16 11 N -0.68 -12.56 5.55 -60.76 -0.34 -12.90 16 12 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 13 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 14 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 18 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.16 -1.66 5.89 -104.82 -0.62 -2.28 16 23 C 0.53 5.63 8.24 34.45 0.28 5.92 16 24 O -0.51 -6.98 14.78 -19.27 -0.28 -7.27 16 25 O -0.51 -3.60 12.69 -40.64 -0.52 -4.12 16 26 C -0.04 -0.34 9.25 -39.19 -0.36 -0.71 16 27 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 29 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 30 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.15 1.79 6.23 -52.49 -0.33 1.46 16 32 H 0.43 6.20 6.07 -40.82 -0.25 5.95 16 33 H 0.41 7.05 7.94 -40.82 -0.32 6.72 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.42 1.22 9.11 45.56 0.42 1.64 16 40 H 0.14 0.86 7.62 -52.48 -0.40 0.46 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -33.48 354.83 -6.71 -40.20 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -3.80 Total: 8.26 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -2.96 Total: 6.95 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.35 Total: -47.29 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.63 Total: -29.79 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.48 -6.71 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600442317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.686 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds